Array 1 6402-7833 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAIZFW010000170.1 Salmonella enterica subsp. enterica serovar Hillegersberg strain FC2223 SAL_OC0837AA_AS_NODE_93_length_12107_cov_2.074541, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
6402 29 100.0 32 ............................. CGCCTCGCTAACTCAATGGGGGGGCTGGTGGG
6463 29 100.0 32 ............................. GTGAAGCCCTGCAGTACCAATATTTTACCGAC
6524 29 100.0 32 ............................. CTGCTCACAACGTCATAATTGAAATAAACCCG
6585 29 100.0 32 ............................. GGGTCAAACATGGGATTACTGGGCGGGGGCGG
6646 29 100.0 32 ............................. CATTTTCCTCTCTCCTCGCTCCCATTGCGACC
6707 29 100.0 32 ............................. GTGAGGCAGTTGGTAGGAATGGCGTACCGCGC
6768 29 100.0 32 ............................. GGTATTTCTCGCGTCACGCTGTGGAGAATGTA
6829 29 100.0 32 ............................. CTGCCGATTGGTACGCGCTGTGCTGTCGTATA
6890 29 100.0 32 ............................. GTTGCCGGATCGTTGTCGGCAAAAAGGCCAAA
6951 29 100.0 32 ............................. AGGTTTTGAGGGCGTACAGCACATCTGAATTA
7012 29 100.0 32 ............................. CCGACGTGGGGATTTACCGCCACGCATAAAAA
7073 29 100.0 32 ............................. GGAGAGCGTATGACCACTAATAACAAACTAAC
7134 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT
7195 29 100.0 32 ............................. GAGCTAAATACTATTACGACAATGAAATGAGT
7256 29 100.0 32 ............................. GGCACAAACCGTACTTTGGCGCATCCATGACG
7317 29 100.0 32 ............................. AGATGCCCAGTCCTATTATCGGTATGAGCGAC
7378 29 100.0 32 ............................. GTTTCCGGGTTTAAAGGCACCCGGATGGATTG
7439 29 100.0 32 ............................. GGGTTGAAAATTATCCAGTCCTGAGCGTTAAC
7500 29 96.6 32 ............................C TCACTAACGTACATATCGATCATGCGCCGGAC
7561 29 100.0 32 ............................. GTATGGCCTCGACCCGTTTCGCGTTCATGAAA
7622 29 100.0 32 ............................. CTCCTCTTTCCACACATCGCGATAGTCGAATC
7683 29 100.0 32 ............................. AACCAGAACTTCACAACAGCGTATTTTTATAA
7744 29 100.0 32 ............................. CTGGCGGCATTAAAACAAAATATAGTCGATCG
7805 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================ ==================
24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GGCATGGAGGACGATATCGCTGAACAGATTGCCGTCGCTGTGGCTAATCGCATGATGCAGGCATGGGGCGGCCAAACCATCTACCTGCCCAAAGGTATGATCTTCATGACATCGGCGCGGGACTATAAAATCTGGCAGGAGTGTGATGGACGCAACTACCGCGAACTGGCGAAGAAGTACAACCTAACCTTGCAGTGGATCTACAAAGTGGTGAAAAAGATCCAGCGTTCTGAAAGCGCCCGCCGACAACTCCCATTATTCTCTATCACTGATGAATCTGAAGCAGTAAAATCAACCCTGAAGTGATTGATGAAACGAGGTCGTAATGACGTTGGCCTCGTTTCAGTATCTGAAAAGTAATTACAGAAACCATCCCGTTAAAACTCACCTTACCCCACTTAATCCCAGAATTATCGTGCAGATGGTGATGGGTTTATCTCACTTCTGATTACCAGCGGGGATAAACCGCCGCCCCGGCAGTCATGGGTTGTTATTTCTGG
# Right flank : GGAATGACCGCTGGTTTTTCTCTAATTATGGCTATATCACTAAAGCGGCAGCGACTGCTGAGAGATTGAGATTAATTAACCCGAAGTTCTATAATCTATTGTACATGAACCATCTGGAAATATTTTTCTTTCTTTTTGATGGCTATCATTCCAAATGATATATATTTGGGTGACTATGCATTTACTACCGAAGATGAGGCAATGAGGTTTTTAAAGAGGTTAATTCAATGAGTGATTTTCTTAAATGGATAGTCAGGACCTTATTAAAGGACATCATCGGTTTTATGCTACCGACCGTGATTGTCATCGGTGTTATGATTATCGTGGTAGTGAATTTTTCTGAATATTCAGGAATGTTATTTTTCCCTATAGTTGTTATTGCCATCTATCTTACGGGGAAATTAATTAAATAGTTTTCAATGAAAAGTTGTGTTATTCAATTAACATTTGAAATACTTATTATTAACTCTATTCCTGATCCGACAACAATCACTGGTGTT
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0.27 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 1 37473-39942 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAIZFW010000044.1 Salmonella enterica subsp. enterica serovar Hillegersberg strain FC2223 SAL_OC0837AA_AS_NODE_13_length_79071_cov_2.281427, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
37473 29 100.0 32 ............................. CAGCCGTAGAGATAGAGAATATAAACGACTCA
37534 29 100.0 32 ............................. ACAATTTCCCGATAGGCGACGATTTCCAGTAA
37595 29 100.0 32 ............................. GCTATACGGTGGTTATCACTGAGCCGAAACCA
37656 29 100.0 32 ............................. AGAGCTGTGGCACTGTTTTACGGGTTGCCGAC
37717 29 100.0 32 ............................. CGGCCCCTTACCGATACCCAGTCGTACTCCCC
37778 29 100.0 32 ............................. GCTAAACGTGTTCCTGACGACCTGGCGAGAAT
37839 29 100.0 32 ............................. GACAAGGGCGAGGCCTGCGAGGGAAAACGGAG
37900 29 100.0 32 ............................. CCTCGTTCCCGGTGGTGGTGTTCGATCCGCCA
37961 29 100.0 32 ............................. GCACGTAAAAATATTGGTATTGATGGTGACAT
38022 29 100.0 32 ............................. TTCGTGTGCCTCAGGCTGGCTACTTAGCACCT
38083 29 100.0 32 ............................. ATGCGCGCCGAGGATTACGGCGATCGCCTGAT
38144 29 100.0 32 ............................. GGGATAAATCGGCGCGACCATTCCAGCGGTAA
38205 29 100.0 32 ............................. GAGATGGGAGAGAACGCCACCGAGGCAGATTA
38266 29 100.0 32 ............................. GTAAATGGACGCCTTCGATTCATATGCCACGC
38327 29 100.0 32 ............................. CTCTGAGGGTATATCCCACCTTGAGGGATACC
38388 29 100.0 32 ............................. GAACGAAACGGACTGGGCTGCCGATCGGCTGG
38449 29 100.0 32 ............................. TATACGCGTCAGATATTCCCTGTTTTGTATCC
38510 29 96.6 32 ............T................ CGTTCTATGCTGCCGATGACGTCCCGGAACGA
38571 29 96.6 32 ............T................ AGCGCCTTGGATACTTCGACTATACGTTTGAT
38632 29 96.6 32 ............T................ GCTGCTGCTCAATCCGTCTGGGAAAAATACGA
38693 29 96.6 32 ............T................ CGCGCGGCGGCGCTTATCCGTCAGCTCTTTGA
38754 29 96.6 32 ............T................ CTCCGTAACTTATCGCCGTGGATCACCAGATA
38815 29 96.6 32 ............T................ TTGAAACTGGCTGGACTTGCGCCAGTGTTACT
38876 29 96.6 32 ............T................ CCTCAGCACGTATCAGAACGAACTGGCGCTGC
38937 29 96.6 32 ............T................ TTTATTTCACCTATAATCGCCCGGCTTGCGCA
38998 29 96.6 32 ............T................ AGTCTGCTGCCCCCTCCTGATTTCGTTAAAAC
39059 29 96.6 32 ............T................ CTTCGAGTGATAATTCAGATACTGTTTTTTGG
39120 29 96.6 32 ............T................ GCGGCACGGTGTGTTATATCTGGAGCGAGATA
39181 29 96.6 32 ............T................ GTTGGTGCCGTTTGAAACTTCGACTCCCTGAG
39242 29 96.6 32 ............T................ CGCGTCCTCTTTTAGATTCTCCGTTGTTCCGT
39303 29 96.6 32 ............T................ AGCAGATCAACAAATGGATTGAGGACTACGGT
39364 29 96.6 32 ............T................ TGTTGAAAAACACATTCCCCTGCGCTAACGAG
39425 29 93.1 32 ............T...............A AAAATAAAATTTCCATAGTGATTAATTATTAT
39486 29 96.6 32 ............T................ TAGAAGATTATGACAAATTGTCGATTTTCCAA
39547 29 96.6 32 ............T................ GATAAACCGGCCGGGGCAATCTCCCAGAGTGC
39608 29 96.6 32 ............T................ GTCAACGAGGGTTTAAATTGGTGGTGTATTGG
39669 29 93.1 33 ............T.......A........ TGCCTGTCAGCCTGGCTCATTTGCGCTCCCTGC
39731 29 96.6 32 ............T................ AATCAGCAAGAAATTTCCCAATATCGATTTCA
39792 29 100.0 32 ............................. GTTTTTTGCGTGGCAAGTGTTTGCCGGGCGAT
39853 29 100.0 32 ............................. GATTCATCAAGCGCGACAACGCTCGTTTTATC
39914 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================= ==================
41 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGTGATGATAAACCACGCGTAATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTACGGACGGCCTGTCGTTGCCGTCAATGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGAGGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGGAAAAATCATTCTATGAAATTTTTTGTAGCAAAATCAGGAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATTTAGT
# Right flank : GCTATATCCACAAGGGCTGGATTTTCTTTATTTCCTTATCGAGCCGATTGCAGAACCGTTTGTTGAAGGATTAACCATACTTGAAAAATCAGGGCCAGCTGATTTCTCATATTTGCTGGAGATGATAGATCATGAAATGCAACAGGCAAACAGCTAAGAAAATAGCATGTAAGATTTATTATGAGCTTTTCGGCTATATAGAAGAATTGCTCTATACGCTGAGCGTATTGATATGCCTTTTCTCCTTGTTTATTTTCGACACATGGACAGGGCGAGTCTTATGTATTGTTTTATCAATCGGAGCAACATATTTACTGACAAAGATCTTGCCCAAGGATGAATAACAACATGGAAAAACGTTTTCAACCCCATCAACATTCTGGATACGTTTTGTAAACAGTACCGCTCAGTCATGGGCAGAATTGAACTGGCCCGCCCAATGAGGGGGACGCATTTTCCGAACTGGCCCTCCTGGTGTTTTCTGCCCTTAGTCATCTGGC
# Questionable array : NO Score: 5.88
# Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 50186-50822 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JAIZFW010000044.1 Salmonella enterica subsp. enterica serovar Hillegersberg strain FC2223 SAL_OC0837AA_AS_NODE_13_length_79071_cov_2.281427, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================ ==================
50186 29 100.0 32 ............................. GTGTCCGGTGAACTGGCGAACGTCGGCGACGA
50247 29 100.0 32 ............................. CCAACACGTATACAGATAACTCATCTAAACAA
50308 29 100.0 32 ............................. CGCACGATTAAATACCCGATAATCAATTTGAT
50369 29 100.0 32 ............................. CCATCGAAAACGACGTTTATAGCAGCATGGGT
50430 29 100.0 32 ............................. GCCACGCGGCGTGGTTTTAACTGGCTGCGGGG
50491 29 96.6 32 ............................T GGATCGCGTTCGCTACTACCGTGAGCAAAGTC
50552 29 100.0 30 ............................. GAAAAAACAATACAAAAAGGGCCACTTTGC
50611 29 100.0 32 ............................. CCTCTTGAGGTTCATCCCCGCTAACGCAGGGA
50672 29 100.0 32 ............................. GACGCGATGGGGAATATCGTTAAAGTGGTTTA
50733 29 100.0 32 ............................. CCCCGCCATTTTTCCGACGTTATCCCACGCGG
50794 29 100.0 0 ............................. |
========== ====== ====== ====== ============================= ================================ ==================
11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : AGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAATACCTGGCTGGCGCTGTATCAGCCGGACTCCCGTCCCAGCCTGATTCTGGCGCATAGCGCGCGTCGCTTAATGGATCGTTTCAATCAGTCAATATGGTCGGTCACTCTTTCCGGTACGGAAGAACCCGATGAAGCGCAGCCTGATAGTCAGGGATGCGCCGCCTGGTTTTCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGCGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTATTGGGTCTTAGCAACAAGATTTTACTGGCTGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATT
# Right flank : GAAACAGCCGCGCACCCAAAAACAGCCGCGCGAGTGTTCCCCGCGCCAGCGTAAAGCCGCGCGCGATAAATCGGCGCTAAAAACGCGATAAATAACAGGCGGCTTTCATTTCAGTATGAGTAACAGATTTTCACTTATTTGGGGTACGCCTGAACTCTGAACAGCTTGCTGTTCAGCTGTTGACGCGCACGTTTATCCAGGAATCGGATATAACGGAACTGTTTAAAACGATGTCTCGTTGCTTTATCCAGATTTGCTCGAAGGTACTCTCCGCGTTTGCCACCACGAACCAGCGCCGTTCTACATATCTCATGGTAAAACTCACCATCCAATTCATAAAACGTAGAGAAATGGCTACCGATGTAGTCAAAGTTTGCAGCCTGATACACTACGCCTGAACGGCCACAACGCTCATCTGCAAATGTTTGAACCCATTTAACTTGTGGATAAAGAATGGAGATAAGCTTTAGTGAGTAAGCTAAGACACGACTTTCAGTATT
# Questionable array : NO Score: 6.25
# Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//