Array 1 11457-12398 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AYTZ01000013.1 Frankia sp. CcI6 CcI6DRAFT_scaffold_12.13, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     11457	    29	  96.6	    32	............................T	GGTGGTCCGGCGCAGATCTGGCTGGCGGTAAC	
     11518	    29	  96.6	    32	............................G	TCACCCGGCAGGGTGGGCCACAACCCGGCGCG	
     11579	    29	  96.6	    32	............................A	ACGCGGATGCGCCCCGCCGGGCGGGAAGCCTG	
     11640	    29	 100.0	    32	.............................	CGCAGCAGTGTTCACCCGCGCATGTCTGTTAC	
     11701	    29	 100.0	    32	.............................	GAGATGAAACACAGCAGCTCGACAGGGGTGCC	
     11762	    29	 100.0	    32	.............................	TCGGCCCAGCCCATCCGCTCGATGGCGCAGCG	
     11823	    29	 100.0	    32	.............................	TCCCTCGCCGAGATGTGGGTGCTCACCCGCTG	
     11884	    29	 100.0	    32	.............................	GGCTCTACGCCCTGCACCACGTCGACATCGCC	
     11945	    29	 100.0	    32	.............................	CAGAACATGACCACGGTCGGCTGTCGCGCGCT	
     12006	    29	 100.0	    32	.............................	CGTCTCCGCGGACTCGACCAGTCACCCATGCC	
     12067	    29	  96.6	    32	............................G	GTTCCCGAGCATCGACCGGGCGGCCTGCGACC	
     12128	    29	  96.6	    32	............................G	GTCTCGTGCATTCCGATCGCGGCCGCGGCGGC	
     12189	    29	  96.6	    30	............................T	ATTTTCCGGAGCTTTGAAACCCATTGCTTA  	
     12248	    29	 100.0	    32	.............................	ATTGCGGTCCTGCACAGTCATCCAGACCAGGG	
     12309	    29	  96.6	    31	............................T	CCCAGAGGGCAGTCCTGGAGTGGTGGCGCCC 	
     12370	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
        16	    29	  98.5	    32	GTCGTCCCCGCACGCGCGGGGATCTTCCC	                                	       

# Left flank :   GCCCGCATCATCCACGACATCAAAGACCTCCTCATCGAGGAAGGAACCCGAGATAACGACGAGGACGCACTCCACTTGTGGGACGAGCTCGACGGCCACGTCCCCGGCGGCGTCAACTGGGCCGCCGACCTCGCCGACCAGACCGACGACACCACCATCCTCGGTGTCACCGGACCCGACACCGACCAGCCACCCCCACCCTGGTGACCGTCATCGTCCTCATCGCCACCGCCGACGGCCTCCGCGGCCACCTCACCCGCTGGATGATCGAAATCTCGGCGGGCGTCTTCGTCGGCAACCCCAGCGCCCGCGTCCGCGACCGGCTCTGGACCCTGCTCTCCCAACGCGTCGGTGACGGCCAAGCCATCATGATCGAACCAGCCACGAACGAACAAGGCTGGGCCGCCCGCACCGCCGGCCGCAACCGCACCCAGCCCGTCGACTACGACGGACTGATACTGTTTGCCCGATCTCGCCGATAAACCCGCAGGTCAGCAAGT
# Right flank :  CCTCGACGTACACCACAAGCGGCTACACGCCGAGTCGTCCCCGCACGCGCGGGGATCTTCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCCCCGCACGCGCGGGGATCTTCCC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.14,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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