Array 1 704762-706990 **** Predicted by CRISPRDetect 2.4 *** >NC_018664.1 Gottschalkia acidurici 9a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 704762 30 100.0 36 .............................. ATTCTTTAATTCTCTATATTTTTTTTGCTTATACTC 704828 30 100.0 36 .............................. ACTCCTAATAATTCTATAGCTTCTTTTAGTTGTTCG 704894 30 100.0 37 .............................. ATTTTTTCAAAATCATATTTTGCAGTAAGGCCATTTG 704961 30 100.0 36 .............................. GGATAAACACTAGCCAAATGACTAGGAGAAAAAACA 705027 30 100.0 36 .............................. TTCATTGCCATCTCTGATGAAGCTAATGTACTTATC 705093 30 100.0 37 .............................. ATCCATCATACAATTCATCAAATGTAAATTGATCCTT 705160 30 100.0 37 .............................. GTTAGAATTGATGAATTATCAAGACAGGATCTTGACG 705227 30 100.0 36 .............................. CCACATTAGAGGTTTAATTGATAAGGTGCATACTTT 705293 30 100.0 37 .............................. CTTGAAAGAGATTTTAATTGTCTCTTTGCTTCTTGAA 705360 30 100.0 36 .............................. AAAATTTAAACACCCACTAAGTCTTTCATACTTACT 705426 30 100.0 37 .............................. ATGATAGAGATGAAATGTTGAATATCAAATCTTACTT 705493 30 100.0 36 .............................. ACATTAACTAAAGAATCTAAAAAACTTCTTGCAAAG 705559 30 100.0 36 .............................. TCTATTGAATTTCTGAAAAGATTTATTCATTTTATC 705625 30 100.0 36 .............................. TAAAAATAATAAGTAATTTATTTTATTTTCATATTA 705691 30 100.0 36 .............................. CTTTCTAAGTTGGTGAATTTATCAGTACCAAACATC 705757 30 100.0 37 .............................. AGTTTTACGATATATACTGAAGAAGAGCCACGAGAAG 705824 30 96.7 37 ..........C................... AATCGAATAGGCATAATAAATAGCAATAGCAACAAGC 705891 30 100.0 37 .............................. ACGGAGATGGGGGAGACCCCCAAACCCCTGTTTTTTA 705958 30 100.0 36 .............................. TTCTTTTAAATAGATTTAGTCCAAGTGCTATTATTA 706024 30 100.0 36 .............................. ATGCAACGAATGCTATAATCTTTCATTTCTGATATC 706090 30 100.0 36 .............................. ATATAGTAAAACATCATTCTTCCTTGACAACTGATT 706156 30 100.0 37 .............................. AAAGTAGAGTGGTATACTCCTAAATCAGGATTTTCAT 706223 30 100.0 37 .............................. TTGGTAAAGCAATGATAGGTATACTCTCTGTTTTTGC 706290 30 96.7 37 .T............................ ATTGATTTTTGATAAGTGTTCTCTATATAAATTCTTC 706357 30 96.7 39 .T............................ AAATTTAGAAAAGTAGATAGAGCTAACTTAACCGTATTT 706426 30 96.7 36 .T............................ ATGGGTGACACCACAGGACTTTTCTAGAGGTTTCTA 706492 30 96.7 37 .T............................ TTCCACATAGTAGAAAATAGTGTACTTCTCAGACCAC 706559 30 96.7 38 .T............................ GCTAAATATCCTAGTAAATATGGGACTGCTCTATCTCC 706627 30 96.7 37 .T............................ ATATATGAGCAATGTGAAGTAATGCAATCCATATTCG 706694 30 96.7 37 .T............................ GAAGATTTGAAGAAACAAACTAAACAATTTATAGAGG 706761 30 96.7 36 .T............................ TTACTATAGCAAGGTCTAAAGCTTTGGCAATTGCTC 706827 30 96.7 38 .T............................ TCGATTTTTTCTAGTATTGGATCTTTAGGTTGAGATTG 706895 30 96.7 36 .T............................ TTTGGACAAGGTTATAAGTCTATGTCACCAGTAATC 706961 30 90.0 0 .T.............C.A............ | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 98.6 37 GCATTAATAGAACTAAAGTAGAATGTAAAT # Left flank : GAGTATGAAGGTTTTAAGATTTGGTGGTGATTTTGTATGTACGTTGTTCTAATGTATGATATACTAACAGATGAGGGTGGAGCGAGAGTACACAGAAATACATTTAAGATATGCAAAAGGTATTTAACTCATATACAGAAATCTGTATTTGAAGGCAACTTAACGGAACTCAATTTAATGAAATTGAGAAAAGAATTAAGTGAGCACATAAGAGATAATAAAGATTCACTAATAATATTTAAAAGCAGAGATGAAAAGTGGCTAACTAAAGAGTTTATAGGATTAAAAGATGATAAAACATCTAATTTTTTTTAAAAGGGGGATGTCGATCTGTAGTAGTGTAAAAAATACTAAGGATAGACAACCCTAGAGAAGATCTAATTTATAAATGGTTTTATATGAAAATTAATGTGAAAACATATGTTACTCTGATAGAAAAAGGACACATAGACAGAAAGTTTAATTGTGGCCTAGATAAATAGATGAATAGATCAAAACGG # Right flank : TGACATAAATATTTCGTTTAGTTGCTTGTATTAAAGGAACCAGATAAAAATATCATAATATTGATAAAGCATATACATAAGTTATCAACATAATATTATAATATAGTAGTTATATAAAAACATATTATAGGGATAAGGGGTAGATTATTAAATGATAAAAATAGATGATAAAAAGTGTATAGTATGTGGACAATGTGTTAAGGATTGTTTTTTAAGAGATATAGAAATAGTTGATAATAAGGTTCAGACTAATAATGTAACTTGTATAAAATGTGGACATTGTATAGCGGTATGTCCTACAAATGCAGTATCAATAGATGAGTATAATATGGAAGAGGTAAAAGATTATAATAAAGATGAATTTTCAATAGATTCTGATAACTTATTAAACTTCATAAAGTTCAGGAGAACTGTTAGACAGTTTAAGAATAAAGAAGTAGAAAAAGAAAAGATTTTAAAAATAATAGAAGCTGGAAGGTTTACTCAGACTGGTAGTAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATTAATAGAACTAAAGTAGAATGTAAAT # Alternate repeat : GTATTAATAGAACTAAAGTAGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 2343635-2342573 **** Predicted by CRISPRDetect 2.4 *** >NC_018664.1 Gottschalkia acidurici 9a, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================== ================== 2343634 30 100.0 36 .............................. TAAAGCCACAGACCTTCAGCTCTAAGCTGAACAACT 2343568 30 100.0 36 .............................. ATCCATTCTTTTCTTAGCATTAGAACCCCAGTCTCT 2343502 30 100.0 38 .............................. CCTTACAAGAATCAAGTGTTCGTAAAATTTCTTTTCTT 2343434 30 100.0 37 .............................. CCTTATTTATAATTATATAACATAGACGTCTAGACGT 2343367 30 100.0 38 .............................. TATAATTAAAAATATCAAAACTTGTACAAACTGTAATT 2343299 30 100.0 37 .............................. CAATGTAGACGTGAGAAATGGATTTAGATTCGATATT 2343232 30 100.0 35 .............................. TAGCATTTAAGGTAAAAGAAAAAGTAGTATCAATA 2343167 30 100.0 35 .............................. TTTTCTCCTTGATAAGTGGATTTCCAGTCGCAAGA 2343102 30 100.0 31 .............................. GTGTCAATAATGATCTAAGAAGTGTACTCTT 2343041 30 100.0 38 .............................. TTTGTAGCGTAATCGTTATTTTTTTAGTTACATACTGT 2342973 30 83.3 78 ...............T.T.....AT.T... AATCATTTGTTTTACTTGTAGAGTTATAGTAGATTATAAGCTTTCTATTTTCACTTGTGGTATAATTTTTATATCAAA 2342865 30 93.3 35 ........G........A............ GTTGATGATACTGGAATAAAGTTTTTAACACATAA 2342800 30 86.7 36 ...............A.A....G......G ACTGTAAGTAGTCCTGTATTTACTATAATACTTTGT 2342734 30 90.0 36 ...............C.T...........G TTTTTAAAAACTTATTAATTTATAGTCATTGTACCA 2342668 30 90.0 35 .C.............C.A............ TCGGCTGTGAAAGGTGTTCTTATCTCCATTTCTTT 2342603 30 90.0 0 ...............T.T......A..... | T [2342575] ========== ====== ====== ====== ============================== ============================================================================== ================== 16 30 95.8 39 GTATTAATAGAACTAGAGTAGAATGTAAAT # Left flank : CTTAATAACTGCTGCATGATAGGTCTAGAAGATATAGTTTCACCACTTACAACTTCCTTATATATTTTAGTTATATTTAATTTTAGTTTTCTAGCTAGATCTAATAATATCTTCTCATGCCTAGCAAGAGTTTCACCTTCTCCTCGCTGTTCAGCTTCCTCATCAGATCTAGATTTACGGAGATATATACAATATTGCATATCAAAGCTCCTTTCAAGATATAAATTGTTTATTTACCTTATTACATCATACTTTTATTATTATTTATCTATTGTAAATAATATGTTATACTGGGGATAAGATATTATTTAAGAAGAAATATATGTCAACCTGTAGTAGTGTAAAAAATACTGAGGTTAGACAAACTTAGATGTAATCACACTTGAAATTGATTTTATATAAAATATAATTAATTAATACATAATATTTCGACAAAAAGTGAATAGGTAGACAGAAAACATATTTATAGTAAAGAAAAATCGATATACACAGAATAACGG # Right flank : ACTTTCTTATCAATACCTAATTTTACGAAATTATTAAAAAACAAAAGAGTCAACATATTGTATATACAATATGTTGACTCTTTTTAAATAAGATCACGAGTTAGTAAAACTTATTTGTCTTATTTTTTACTGAAATTTTTAAACAACATAATGAACATCGTTACTCCAATCGCATTTTGCAAGAGAGAATCTCCTTCAAAACAGTTCCACAACTTCTGCGATAAAAAATTTAATCCTAAGAAAATAAGAAAAAACTTTAAGTGATCTAGAATCCACTTTAAGTACTTATTCATATGAATATTGATCTTTTATAATAACTATTAAAATTATAAACTTTCTTTAGATTTTAATAGTTCAACTACTTTTCTAAATATTATTATTTAAGTATATCTAGAGCCCAAAATACTGCATTTAGATAATTTAAATTCTTAAATGAAATAATAATAGTAATTAATGATAAAATATTTAAGGTAGCTCCTATTCCAGATATTATCTTTTGT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTAGAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //