Array 1 117-1753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEA010000028.1 Flavobacterium psychrophilum strain 6739/13 contig00028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 117 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 192 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 268 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 344 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 420 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 496 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 572 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 647 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 723 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 799 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 875 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 951 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1026 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1102 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1178 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1253 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1329 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1404 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1480 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1556 46 100.0 30 .............................................. AATCAAAATAAGGTTTTAAAAGCGGCTTGG 1632 46 100.0 30 .............................................. AGGGCTTCGATTTTCTCGGGTTTCCATTTA 1708 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 22 46 98.5 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : ACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 640-115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEA010000062.1 Flavobacterium psychrophilum strain 6739/13 contig00062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 639 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 570 42 97.6 27 ............................A............. AGCTGAAAAAACACCCCTTCTAATAGT 501 42 97.6 27 ...T...................................... GAGTGCAAAAGCACCTCGATTAATAGT 432 42 97.6 27 .A........................................ CTCTGCAAAAGACCCATCTCCAATAGT 363 42 100.0 27 .......................................... ACTGAAAAAAGCACTATTTTCAATATC 294 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 225 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 156 42 78.6 0 ...TG.............A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 96.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAG # Right flank : AATATTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAAC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 386-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCEA010000077.1 Flavobacterium psychrophilum strain 6739/13 contig00077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================= ================== 385 40 100.0 29 ........................................ ATCTGCAAAAGCCTCATCTCCAATAGTAG 316 40 100.0 29 ........................................ GCGTGCAAAAGACTCATCTCCAATAGTAG 247 40 100.0 29 ........................................ ACTGAAAAAAGCACCATTTTCAATATCAG 178 40 100.0 29 ........................................ ACCGCCAAAAGCACCTCGATTAATAGTAA 109 40 100.0 29 ........................................ ATCTGCAAAAACATAATCTCCAATAGTAG 40 40 80.0 0 ................G..G..C.........TT.TTG.. | ========== ====== ====== ====== ======================================== ============================= ================== 6 40 96.7 29 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : A # Right flank : A # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //