Array 1 1186811-1185119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048105.1 Helcococcus kunzii strain H13 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1186810 36 100.0 29 .................................... CAGATCCTTATACTCAAATATTTAATATT 1186745 36 100.0 29 .................................... AGAGTGGAAGAATTTCCATAAACAAGGAA 1186680 36 100.0 28 .................................... TCTAGATTGGAAATACGAGCTGTATTTT 1186616 36 100.0 29 .................................... GGTGCAGAACTTGGTTATAATCTGAAATT 1186551 36 100.0 28 .................................... TGTTTAGCAGTTAATTTGTTCATGTTTA 1186487 36 100.0 27 .................................... CAAGCTAGGTAATTATAGTAGTTGTAA 1186424 36 100.0 27 .................................... GTATACTGTACCTTTTAATGGTAATAG 1186361 36 100.0 27 .................................... ATATTACCCTATTAATAATGTTTAATA 1186298 36 100.0 28 .................................... GCTTGTTGTAATTCTTGGTATTTATTAA 1186234 36 100.0 27 .................................... TTAGGTTGGGAGGAAAATGTGGAGTAT 1186171 36 100.0 27 .................................... ATCTTGGGATTGGTAGAGAGCTTTACA 1186108 36 100.0 26 .................................... AAAACTGATACAGATAAGGTTTTATC 1186046 36 100.0 25 .................................... ATAAGGAGGTGTTTATGTCTATTGG 1185985 36 100.0 27 .................................... GTAGTTTAGCCACATCTTTATGCTTAA 1185922 36 100.0 27 .................................... TTAACAGGTTTATATTTCAAATCTATA 1185859 36 100.0 28 .................................... TTTGCTCCATTTTGTGACATCTGGAATG 1185795 36 100.0 27 .................................... TGTGTTACTTTTGTGTTACTTTCTTTC 1185732 36 100.0 28 .................................... AGTAAAATCCACTAGTATTGTGGTGTAA 1185668 36 100.0 29 .................................... GAAACTACCCTCGTCTGTTAATATATCCC 1185603 36 100.0 30 .................................... GATAAAAGCTGAAAGACTTTTTTTTTACTG 1185537 36 100.0 28 .................................... ACTAGGAGTGCAATACACGCAATAGCTA 1185473 36 100.0 28 .................................... TATCGTCTATCGCATATAATCCATTAAG 1185409 36 100.0 30 .................................... AGGAAAGTGTCAGGTACTCAAGCTTTTGGT 1185343 36 100.0 27 .................................... TCTAACGAATTTGCTTTTTACTGCATA 1185280 36 100.0 27 .................................... TAGCTTGTCAGGTACTTGTGCTGTTTC 1185217 36 100.0 27 .................................... TGCTCCACCTGTAGTTTCCTTATTTAA 1185154 36 91.7 0 .........................T....T..A.. | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.7 28 CTTTAAGAGATACTATTAATTTCTACTATTGTAGAT # Left flank : ATAGAGAAGATTTGTTTATGTATGTTCAAAATTATTATAGAGCATTTATGAAAAATAAAAATATCGTCGATTTTCCGGTATATAAATTTAGGTAGGTATGATATGTTATTTGTAAGTTATGATATTAAAGATGATAAGACAAGAACTAGATTTTCAAAATATTTGAGTAAATACGGGTATAGAGTGCAATATTCCATTTTTTGTGTGAAAAATTCAGATAGAATATTAAATTTGATTAAAGCGGAAATTGAAAATAAATTTAAAAAACAATTTAGGGAATCTGATAGTGTTATGATATACAAAGTTGATAAAAATAGTATTATTAATTATGGGTATCCAATTCACGAAAATGATGATATAATTATTATATAAACCCTATACTTAATATAGAATTTCTTAAAGGATATCTAAAAATGTATTCATTAAATGAGAGTTTATGCATTGCAATACTAACTATAGTGACATTCGGAGCGCTTGTATTGAATATATATGTATTAGCT # Right flank : CCACTCGAAAAAAATCTTCTTTTTTTATCAAAACAAAACAGTTATGTTACCTTTTAGTAACAATTTTGTTACTTTTGTTACCAAAACCATTGTGTTATTCTCCTATGTGGTATAAAATATGAATAAACGCTATTATTTTACTATTTTATGCAAGAGGGGAAAAAATGAATTATAAAAAGACTTTATTATTGTTTTCACTTACTATTTTAATGATTATTTTTGGAGCGGGATTTAGCAATGCTGCTAATTTAGATACAGCTGAAGAGTTGCCGGAAAAGGTTTCAGGTGAAACAATAAAGGAAAACAAGACTGAGACTTTAAACGAATCAGTTGATGAAAAATCTAACGAAACTTCTATTGAAGATACATATAAAGAAACTGAGACCGAAGAAGAGATAAATGCGGTAGACTCAAAAGAGGACATAACTAGAAAAAATACTATAGAAGAATCTACAACAAATAGGGAATCATTTCAAAATCAAAATAGTTTTGAAATATCT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGAGATACTATTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1689759-1689259 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048105.1 Helcococcus kunzii strain H13 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1689758 36 100.0 30 .................................... TTATATGATGATGAAAAAGGTTTATTGGTG 1689692 36 100.0 30 .................................... TGGACTTATTATATAGTTGATAATGTGAAA 1689626 36 100.0 30 .................................... CTGTCAAAGTTATCAGAGTTTACTAAGTTA 1689560 36 100.0 30 .................................... TAGACAGTAGTGAAGTGAGTATTATTATTA 1689494 36 100.0 30 .................................... AATTGAGTATTTAACTCTCCAATTGCTCCA 1689428 36 100.0 30 .................................... TAGATGTAGTTGCAAATTTCGCAGATTATA 1689362 36 100.0 30 .................................... TTTATCTCGAAACTTAAAATATTATATGAA 1689296 36 91.7 0 ..................C......T.........A | TG [1689260] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.0 30 GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Left flank : AACTACTTTCAAAAATTATTAAAGATCTTACAAGTATGTCTAAAGATGAATTTAATTATGCTAAGACAATGTCTATTAATCAAAATATTCAACAATATATGAATGATTTGATTTTTGAATCAGACTATCCTTTAAAAATTAGCGAAGAATTTGACTTTAATTATTTAGCTAAATGTTTGAAATTAGAAATTATTGAAGATTATGATAGTTTTATAGAACAATTGATTTCATATCTTGATCTTTATTTGATGATATTAAATTCAGATATCTTTATTACATTTAATATTACACAAATATTGGAAAATGAAGAAATTAAAGAGCTTATTGAATTTGTTTATAAAAAGAATATTTTACTTATAAACTTTGATATAATATATATGAATCAGAATCTTATTAAAAATCAGTTACTTTTTGATAAGGATTTATGTAGAGTATTATAAAAACTTATATGCAATTACACATTATGATGGTGTTTATCATTCTTACCCCATGGATTTGGG # Right flank : TTTAATTATCTTTTAAAAAATCTATAATTATAACTGAAATAGAATAAAATAATATCTCTAAATATTTCTATTTAAAATAAATATATAATCCAATTCAAACTCATATCTCAGATTGTTTTATTTCTATTCTTAGAATCTAATATTTTATCTTTTCCTATTATATCAATCCTTTTTCTGGGTATAAATTAGCTAAATAAACTTTAATCTTTTAGGAGAATTTCTATGTTTCAGAGTATTTTAATAAAATTAATCATCGGATATTTAGCGTTATTAGTAGTTGTAAGGATAGTAGGGAAGAAGTCTTTATCTAAGATGACACCACTTGATTTGGCTTATACTATTGTTTTGGGCGGAATACTAGAAGAAGCTATTTATGAAGACAAAGTAGGAATTAAAGAGATTTTGTTTGCTTTATTTGTATGGGCCTTTGTTATTTATATTTTTGAAGTTATCATGAGCAATTCTCAGTTGTTAAGCCGTATTTTGCAGGGAAAACCGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //