Array 1 13236-14262 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTWS01000012.1 Enterococcus faecalis strain CVM N59508F N59508F_S3_L001_R1_001_contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 13236 37 100.0 29 ..................................... GAAGGGTATGGAATAGATACCTTCACGCT 13302 37 100.0 29 ..................................... CGTTCTTGTGAAATAAGCACTTGGACATT 13368 37 97.3 29 ....................................C AGCCTTTCGGACGTTGTTCGGACACCTTT 13434 37 97.3 29 ....................................A CTCGCAAACTGATACGTTCTCTTATTAGA 13500 37 97.3 29 ....................................G ATAACAGAAAACCGCCTAGCCCAACTGTC 13566 37 97.3 29 ....................................A GATCGCAACAGTAATGTATTCAGTAGCAA 13632 37 97.3 29 ....................................C TCCCATTTGCGATCAATTGCAACACAATC 13698 37 100.0 29 ..................................... AAGCAAACAGGTACACTGAAAACACTATC 13764 37 100.0 29 ..................................... CTATAATAACCTAGAGGGATTTCAATGAG 13830 37 97.3 29 ....................................A GCAGCTTCCTCTGCTATACGCTCTTCTAA 13896 37 97.3 29 ....................................G CAATAGATAATGTTGCCCAAATTGGATAA 13962 37 100.0 29 ..................................... AAACACGATGATGGTTATTGGACCTATTA 14028 37 97.3 29 ....................................A GATCGCAACAGTAATGTATTCAGTAGCAA 14094 37 100.0 29 ..................................... AAGCAAACAGGTACACTGAAAACACTATC 14160 37 100.0 29 ..................................... CTATAATAACCTAGAGGGATTTCAATGAG 14226 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 16 37 98.5 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAAACCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCTTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCAAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 83145-82251 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTWS01000011.1 Enterococcus faecalis strain CVM N59508F N59508F_S3_L001_R1_001_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 83144 37 97.3 29 ....................................C TCTACCTCTAATACTTTTCCTGTATATTC 83078 37 100.0 29 ..................................... TATCCGATAGAATAAGTAGGTCTAAGTGC 83012 37 97.3 29 ....................................C CTTAGGCCATTTGTTGCACATCACTTTGA 82946 37 100.0 29 ..................................... GTTAAATCTGCTAAAAATAATGTTTTAGA 82880 37 97.3 29 ....................................C GATGATTCAATTCTTTGATCACTCCTTTT 82814 37 100.0 29 ..................................... TCCCATAAGGTTGTGAAAAAGTCTTTTAT 82748 37 97.3 29 ....................................T TGATTTATTGATTATCGATCACCATGACA 82682 37 100.0 29 ..................................... GGTGCCTCATATAGTGGTGATGCTCTCGT 82616 37 97.3 28 ....................................C GCTTTGAACGGTGTGTTCACTGGTGAAA 82551 37 97.3 29 ....................................T TCGCCTTAGTATCTTCTGCCAAAGTACTA 82485 37 97.3 29 ....................................T CTTGTTTTGCTTCATTCGTCACAGCTTGT 82419 37 97.3 29 ....................................T GAATGTAAGTCCATTCTTCCTCTGATAAT 82353 37 97.3 29 ..................A.................. TACCACGTTTGCGCATAGGTTTGTCTTTC 82287 37 94.6 0 .........A..........................C | ========== ====== ====== ====== ===================================== ============================= ================== 14 37 97.9 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : AATGTAAATGCTCATTATGATTTACATATGTTTTAGAATCATGTTGTTTAGTTTTCGCAGATACGATATGATTGATGTAAAAATATCGTTAATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTTCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //