Array 1 369465-369643 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JACJAY010000001.1 Staphylococcus aureus strain MKR53 NODE_1_length_634100_cov_129.446822, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== =================================== ==================
369465 36 100.0 35 .................................... GTCAATTTCTCTTAAAACTATTCTTATATCTCTCA
369536 36 100.0 35 .................................... CTTGATTTGTTTCATACTGTAAAATTTGATTGTCT
369607 36 91.7 0 .................................TGT | A [369637]
========== ====== ====== ====== ==================================== =================================== ==================
3 36 97.2 35 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC
# Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCATCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTACTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTGACATCTCATATAGTAGCGTGGTGTTAGTTGTCACAATTTTTGACAGCCCAAATAATACTTGAACCCTTGTGGTTATGCTATCTATTAAAGTATCT
# Right flank : TAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGGATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCATTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCTG
# Questionable array : NO Score: 5.22
# Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT]
# Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 90% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: R [-0.10,-3.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [4.91,0.37 Confidence: HIGH]
# Array family : III-A [Matched known repeat from this family],
//
Array 2 378363-378542 **** Predicted by CRISPRDetect 2.4 ***
>NZ_JACJAY010000001.1 Staphylococcus aureus strain MKR53 NODE_1_length_634100_cov_129.446822, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ==================================== ==================================== ==================
378363 36 100.0 36 .................................... CGTCAGTGACGATAACACCTTGTTCACCGAATTTTG
378435 36 100.0 36 .................................... TCTGTTTTTTGTTATTTTTATTATACAACTTTGATT
378507 36 100.0 0 .................................... |
========== ====== ====== ====== ==================================== ==================================== ==================
3 36 100.0 36 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC
# Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTACCTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT
# Right flank : CTTAAAGATTTAAACAATAGCGTCCCATATTGGAAATGATAATTTAATAATGTACACTTTTGATTGTTTAAACATGTACAATTTTTAAACACCTAGAGATAATTTTATTGAGGTGAACAACAATGAAATTATCTTTAGACATAAATACTGATTTTGAAGTTACTACTCTTACAGATTTACCAAAATTAAAAATTGTTATGGAGAACTTAAACATGAAAATAAACAAAAGTGAAATAGCAAGACACATGGGTGTTGATAGAAGAACAGTTGATAAATATTTAAATGGCTTTGAGCCAACCAAAAAGAGAAATCGTCAGTCTATTATTGACAAGTATTACCCTATCATCGAAAAATTACTTTCATACTCTAGTGAACAAAAGTTCTACTATAAGCGTATTCTTTGGCAATATTTGAAGGATAAACATGGGTTAACGTGTGCCTATTCTACATTTAGAGCTTATATCCTTAAACATGATGAGTTTAATCGTTATTTTATGAAA
# Questionable array : NO Score: 5.67
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.24,0 Confidence: HIGH]
# Array family : III-A [Matched known repeat from this family],
//