Array 1 163140-163288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBRJ010000005.1 Enterobacter cloacae complex sp. P43RS contig_0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163140 28 100.0 32 ............................ TCTAGAATATACTTCAAAGATAAATCTAAACC 163200 28 100.0 33 ............................ ACGACGGCCAGGAGAGAAAGTGCAATTCCTGCA 163261 28 85.7 0 .....................A.GC.C. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.2 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCACGGTTTGCATAAGCTGTTTGGTGGCGTGGGCTTTATCAGCGGCATGCTGGTAGAGAAAGGGCTGCCGGGATTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCACCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAGTGGGTGAAACGTTCGCGCTCGATAAGGTTGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTGTTGGCTCGCTGGCGGTAGCGTGTTTAGGGGCAGGGCGGTTTGCGTTAGGGAAAGCGCCTGCGTGGCAATAAAGCTGGGTGCTAAAAATATAAGGGTCTCTGGACCCTTTTTTATTGGTGGTTTTTAAGTCTTTGATTTTATTAAGCGGAATTATTTGTGATGAAAAAAGGGTTTAAAGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : AACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGATCGAACGTTTATCGCTTATGCGAGGACCAAATCCCCCTGCGGGTGGCACGAGCACGCCAGCACGTAACCTTCAGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATATTCCCCTGAAACCACTTTCGTTTTACAGCAGCCGCACACGCCCGCACGGCAGGCCGCGACTACCGGCACCTTGTTGCTTTCCAGCGCTTCCAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTCTGTGCGGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCAAGCGCTCTAACTTCTTTCTCCACGATATCCATGTACGGCGCCGGGCCGCAGGTCATCACGGTACGGTTCGCAATGTCCGGCACGCTTTGCAGCA # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 180027-180899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBRJ010000005.1 Enterobacter cloacae complex sp. P43RS contig_0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180027 28 96.4 33 ..........................G. AACGATGCGACTTTTGCGGTAACTGGCTTGATA 180088 28 100.0 32 ............................ TTTCTGAAAGCACTCTATATCCAACAACCAGA 180148 28 100.0 33 ............................ TTTAGCATTGACCACGCAGCCAATATCTAAACA 180209 28 96.4 33 ..........T................. CATGTCGTACCCAGCCAGCTCTAACGACCCTTC 180270 28 100.0 32 ............................ TGTCCGCTTTGCAGCGACGCTTCCATCGTCTG 180330 28 100.0 32 ............................ TTTTTCTGTGTTGGGTGTTGTGGGGTGGAATT 180390 28 100.0 33 ............................ TACGGAACCCAGCTGATTAATCACAGGCTTTGT 180451 28 100.0 32 ............................ TTGTCGATGCCGATGTTTCGCGCCACATTAGT 180511 28 100.0 33 ............................ TCCCGGTCATGTTATCGGTCGGCAGATGCAGTC 180572 28 100.0 32 ............................ TTGGTGGAAGTGGTGACTGGGGATGCTGAATA 180632 28 100.0 32 ............................ ACAAGGTGATTCAGCAAACACTGGATCGCGTC 180692 28 100.0 32 ............................ ACTCTTCCCACCTCGGGTTCAGCAGGCCACCA 180752 28 100.0 32 ............................ TGATGAAGATTTACTTTTGACAAACTGCGCCA 180812 28 100.0 32 ............................ GCTGACGTTACCGGAACAGAACCGCCTGCAGC 180872 28 96.4 0 .......................T.... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCACAAACGCAGCCCGTATGTCGTTGCCTCGGGGCTTATCTGGAAGAGGTAAAATCCGGCCTCACAGAATCCATGCGTGATTTTCAGGTGGTGGAATTTGAGGATGAAGCGGAACAATCGCGACAAAAAGAGTGGCTGCTGGAAGATACCGAAACGAAATGTGACTACTGCCGGGCGTTAAACCACGTACTGCTGGTATCGCATTTTGACCGCGATATGCTGCCGCATCTTACAGGACTGCTCCATGACATCACGCATTCTATGGCTGCAGATGTTGTTGCGCCTCAACGTTCAGAAACGGTAGTTCACATTATTTCCTGAATGTAGTTTGTGGCGTCCGGGGTAGGCCCCTGACGCCACTGGCTTGACCCTTTTTTTTGATGATTAAGTAACCTTTTGATTTATATAATGCGAATTTACGTTTCAGAAAAAAGGGTTTAATGCGGGAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCCTTTCA # Right flank : AGCCCCTCTGGGCTTTAATGCCGTGGAAATGGCGTTACTGTCCCACAGACAGTACAAGTAAATCCATCCCTCACAAATATTCACCTTGTCTATTTAAAAACGAAATACCATCATCCACACGCTATCCATTTTCAGATTAAATAAAAATCCCATTCAGGGGTTAATTATATTTCCATGTATATATTATTTGTAAAAATAATACTTTTAAAAAATAATGTGTTTTTGTTTAGTTATCACAGAAATTTCCATTCATTTGATATATATCACATTTGTATTTCTCTCATCTCCGATAACATACCCGCACTCAATACCTTGAAATTAAAGCCGTTGCTATGCCTGCAAACAGCGTTACCCCAACAGATTTAAAAACCATCCTGCATTCAAAGCGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTAAATGGTGGACGCGTTGAATATGTCACCCAGGAAGGAAAAGAGTCTTTTTACTGGAATATTCCCATCGCGAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 182185-183354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBRJ010000005.1 Enterobacter cloacae complex sp. P43RS contig_0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 182185 28 100.0 32 ............................ ACCAGCACGCCGGCGGCCATCGCTACACTATC 182245 28 100.0 32 ............................ TTCTGGAACACGACTGTGACCTGGTTGCCGGC 182305 28 100.0 32 ............................ GTTACCATTTAACGCAAATTCGTTAATATTAA 182365 28 100.0 33 ............................ AGCGCTTTCCTGGCTGAAGTGCGGGCGCAGGGT 182426 28 100.0 32 ............................ TTACCGAACGACGTCGGGGTAGTGCGCCTTAA 182486 28 100.0 32 ............................ TCCTGTTTAAGGATTAAGCCATGTCACCTGAT 182546 28 100.0 32 ............................ AGCAAAATGAGCTATGAAACGCTGACGCGCTA 182606 28 100.0 32 ............................ ATAAGCGCAAGCATGAAAGAGCCTATCCACAT 182666 28 100.0 32 ............................ AAAAAGCAAACAGTATTACATGCGCATGGCTG 182726 28 100.0 32 ............................ GTAATTACGACGCTTCACGAAGGGTTTAATGC 182786 28 96.4 32 .................A.......... TGTGTCCGGTTGATTTACTGCCGTGGCTGGCG 182846 28 100.0 32 ............................ TACATGGGCCGCCGGTGCGGCGACGTTCGCAA 182906 28 100.0 33 ............................ ACGTCTAACGGTTTCATGATTAACCATCTGACG 182967 28 100.0 32 ............................ ACGGCTATCTGGGCAATGGGCCACGGCGAACT 183027 28 100.0 32 ............................ TTTCGATTATATCTGCCTCCTGAAGTGGGAGG 183087 28 100.0 32 ............................ AAAAACAGTCGTCATACGTGCGGCCAAACCAC 183147 28 96.4 32 ...........................A CGTCGAAGTTTGAGAGGAGGATGGAAGGAAAG 183207 28 89.3 32 .........T......A..........A TTCAATCGAATTAACCGACAGTACCGGGAGTA 183267 28 85.7 31 ...........C...C......C....A ATAGAAAATAAGGCCTAACAGTCGTCGCACC C [183292] 183327 27 82.1 0 ........T..A....A....C.-.... | A [183347] ========== ====== ====== ====== ============================ ================================= ================== 20 28 97.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAG # Left flank : GGCTGCGGGTAAAGCGAGAAACGTCTTTTCAGCCCGATCGGGACGCGCTGGAGACTATTCTGGAGCGTGCGAAGCAGGGTATGGAAAACGCACAGGATCACACCTCGCTGATGCTCCAGGAAGCTTTGCTCACAAAATCGCTCTACAAACTGACCAGCCAGACGGTGGGCTATGGCAGCTTTACCCGCGCCAAACGGGGAGGCGGGGCGGATATGGCGAACCGTTTTCTCGATCAGGGCAACTATCTGGCCTACGGGCTGGCGGCTGTCGCGGCCTGGGTCACGGGCATTCCTCATGGTCTGGCCGTCATGCACGGAAAAACCCGACGCGGCGGGCTGGTTTTTGATATTGCCGATTTAATAAAAGACGCCCTCGTTATGCCGCAGGCCTTTATTGCGGCGATGGAGGGTGAGGATAATCAACAGTTTCGTCAGCGCTGCATCAACGCGTTTCAACAGGCAGAAGCGCTGGATGTGATGATCGCCACACCCACGGTTTAA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACAGGAAGCGCATTCGTAAAGGGGAGACGACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //