Array 1 60328-60715 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60328 28 100.0 32 ............................ AAAAGTATTTTTGCTTTAGACACAGACGATAT 60388 28 100.0 32 ............................ ATGAATTTCATCAAACAATTACCAGTTGATAG 60448 28 100.0 33 ............................ CACATCGGGGGTAAAAGTAATGGTGACATCAGT 60509 28 100.0 32 ............................ TCGTGCCGGGCAAGACGAGGGAGAAATCGAGT 60569 28 96.4 32 ...T........................ TCTTTCTTAACAATTGTATTGTACAATACAAT 60629 28 82.1 31 ...TTC............C.....A... AAGCCGTATGTGTCTGCCGTAAGATAGAGCC 60688 28 71.4 0 T..T.TG..........GG......G.T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 92.8 32 CTTGAAAGCTGCATAAGCTGTTTAGAAA # Left flank : TTTTTTATTTTCTTTGAAAGTTGCAGGTTTTTAGTCCGCTAGTTTCGGACGCTGTTAATTGGTTGATCTTTTCATTTTGGTGTCAGCGTCCGAATTAGGGGGATTTGGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCGCCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTAACCTACTCAGTTGTCGGCGCTTTGTGAAGGTGCGGGTGGGTGCACTTGTTTGCTTTTGGGAAAGGTAACGGTAATTCGTTTGGAATTAGTAGTGAAGTTTAAAATACTAACTTTTTAAACCCTTTTTTTAGCTAAAAATAAAACCATTAAAAATCAATATATTGCAAAAGCGTTAGAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTGTGTTTTTATAAACGATGTTTATAGTATGTGAGATTCTA # Right flank : TTTTTTTGAAATATCTTAAACTTTTGTTTTTATACTTAAACATGGGTATTTTCTGAAAGTTCTTGTCAAGGTTTCGTGCGACTTTTTAGTTATTATGGAAGGTAGTAATATTGAATTTTAGATATTTTTGAAAATATCTTAACCTTTTGTTTTTATACTAAAACATAGGTATTTTCTGAAAGTTTTTGTCAAAAATCATCTGTTTTTAAATTTGCTAACGGGATCTTATCTTAGGTTTTGTTAAGGATTGCGTTATAATGTCGCCAATTTTTTTGCAGTCTATAAAGATAATCGAGCAATGGCGTTAAAAATAACCAGTAAGTGTATTAATTGTGATATGTGCGAACCTGAGTGCCCGAATGAGGCGATCTCTATGGGGTTTGATACTTATGAGATCGACCCGAATAAATGCACGGAATGTGTTGGTTATTATGATCACTCTACATGCCAGCGTGTTTGTCCGATTCAAAATGCGATAATTGCTGATCCGGAGCATGAGG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAAGCTGCATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 370412-370918 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 370412 28 100.0 32 ............................ AGATTTCATCGTCGCAACGAATGCATGCTGAA 370472 28 100.0 32 ............................ AACAGACCATGTAGGCTATAACGTTCATGTGA 370532 28 100.0 32 ............................ AAACCGGTGGAAACAGACCATGAGTGAGAAAC 370592 28 100.0 32 ............................ ACACAAAATCAAACTAAACAAATAGAACAACA 370652 28 89.3 32 .....TG...........T......... TTCGATTACCTATCTGTATAAAAAATAATCAA 370712 28 92.9 32 ...........T......T......... ATAATTGACATGCCGTCATCCTCGGCTTCAGG 370772 28 89.3 32 ........T..T......T......... GAGCACACAATCACGGTTGTGGGTCGGGATAA 370832 28 92.9 31 ...........T......T......... GAAAACAATCAGATTTAAAAACATTCTAATG 370891 28 78.6 0 ...GG............GG......G.T | ========== ====== ====== ====== ============================ ================================ ================== 9 28 93.7 32 CTTCAAAGCTGCATAAGCCGTTTAGAAA # Left flank : TTTTACTTTTTTGTAAGTTGCACGTTTTTTGTCCGCAAGTTTCGGACGCTGTTAATTGGTTGATATTTTCATTTTGGTGTTAGCGTCCGAATTAGGGGGATTTTGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCTGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCAATCTGGTGCACTTGTTTGTTTTTTAAGAAAGGTAATGGTAAGTTGTTTAGAAATAGTAGTGGAATTGAAAATACAAACTTTATGAACCCTTTTTTTTAGCTAAAAATAAAACTATTAAAAATCAATATATTGCAAAATCGCTAAAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTATGTTTTTATAAACGATGTTTATAGTATGTAAGTTTCTA # Right flank : TATTTTTGAAATATCTAAAACTTTTTGCCTTTATACTGAAACATAGGTATTTTCTGGAAGTTTTTGACAAGGTTTTTTACTTTCTTTGAAAGTTACAGTTTTTTAGTCCGTAGGTTTCGGACGCTGTTAATTGGTCGATATTTTCATTTCGGTGTCAGCGTCCGAATTAGGGGGATTTTGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCTGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCAATGTGGTGCACTTGTTTGTTTTTGGGAAAGGTAATGGTAAGTCGTTTAGAAATAGTCGTGGAATTGAAAATACAAACTTTATGAACCCTTTTTTTTAGCTAAAAATAAAACTATTAAAAATCAATATATTGCAAAAGCGCT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAAGCTGCATAAGCCGTTTAGAAA # Alternate repeat : CTTCAAAGCTGTATAAGCTGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 371492-372420 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 371492 28 100.0 32 ............................ TGCCCTTGAGGCGAATCTAATAAATAATTATC 371552 28 100.0 32 ............................ TCATCAATTCCGTTATAATATAGATTCATTGC 371612 28 100.0 32 ............................ AGCTGCTGAGTGTCTGATCATGCTAAGAACTA 371672 28 100.0 32 ............................ ATCCGTTAATAAAACACTCACTCGAACAATAC 371732 28 100.0 32 ............................ TAAAAACTGGGAATGTGAGCGCAACAAACTGA 371792 28 100.0 32 ............................ GTGCAATCGATACCGCAAATGGGGATGTTTAT 371852 28 100.0 32 ............................ TCTACAAAATACAATATAAAAAACAATAATAC 371912 28 100.0 32 ............................ TTGGGCGATGTCGGTATTTCGTATGTTATATT 371972 28 100.0 32 ............................ CAAAAAACTTAACTGGTTTGTTATTTTTTTTT 372032 28 100.0 32 ............................ TTACCGCCTTCGGGCTTGAAGATGGCGCAGAA 372092 28 100.0 33 ............................ AGTACCGAACCCACCAACAAACGCTGGGTATTT 372153 28 100.0 32 ............................ ATTTTAATTTCCTTATATACATATGATGTGGA 372213 28 100.0 32 ............................ TTTGCTCAATTCATTACCAATAGAACGACGTA 372273 28 96.4 32 .....T...................... ATACTGAGTGAATGCATTAGTAAATTGCGAAT 372333 28 96.4 32 ..................T......... GAAAACAATCAGATTTAAAAAACATTCTAATG 372393 28 75.0 0 ...G.AA..........GG......G.T | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 CTTCACGGCTGCATAAGCCGTTTAGAAA # Left flank : TTTTACTTTCTTTGAAAGTTACAGTTTTTTAGTCCGTAGGTTTCGGACGCTGTTAATTGGTCGATATTTTCATTTCGGTGTCAGCGTCCGAATTAGGGGGATTTTGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCTGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCAATGTGGTGCACTTGTTTGTTTTTGGGAAAGGTAATGGTAAGTCGTTTAGAAATAGTCGTGGAATTGAAAATACAAACTTTATGAACCCTTTTTTTTAGCTAAAAATAAAACTATTAAAAATCAATATATTGCAAAAGCGCTAAAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTATGTTTTTATAAACGATGTTTATAGTATGTAAGATTCTA # Right flank : TATTTTTGAAAAATCTAAGACTTTTTGCTTTTATACTGAAATATAGGTATTTTCTGAAGGTTTTTGACAAGGTTTTTTACTTTCTTTGAAAGTTACAGTTTTTTAGTCCGTAGGTTTCGGACGCTGTTAATTGATTGATATTTTCATTTTGGTGTCAGCGTCCGAATTAAGGGGATTTTTTGCGAAATCTCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCTGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCACTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCACTTGTTTGCTTTTGGGAAAGGTAATGGTAAGTCGTTTAGAAATAGTAGTGGAGTTTAAAATACAAACTTTATGAACCCTTTTTTTTGGCTAAAAATAAAACTATTAAAAATCAATATATTGCAAACGCGTT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 372994-373561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 372994 28 100.0 32 ............................ GCAATATATCTTCCCTGTAGGCGTTTGGTAAA 373054 28 100.0 31 ............................ TTATCGATTTGATAATGGCATTGATTACACA 373113 28 100.0 32 ............................ TAGCTTATTCTGATTTATTCGGCTGAATTGAG 373173 28 100.0 32 ............................ TAGTTCACAGCTTTCGGAATTCTATCAAGCAA 373233 28 100.0 32 ............................ TGCCGGGGGAGTGACTTGAGGCCAAGGCAGAG 373293 28 100.0 32 ............................ TTCAGGCGAATTCTAGCTGTTTTTAGTGCGTC 373353 28 100.0 32 ............................ GTCTGCGCCAAGTGCGATGTTTTCATGACCAA 373413 28 100.0 33 ............................ TCTTACGCAAGATAAGGACATAATCACCGGATG 373474 28 92.9 32 .................CT......... GAAAACAATCAGATTTAAAAAACATTCTAATG 373534 28 71.4 0 ...G.AA....A.....GA......G.T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.4 32 CTTCACGGCTGCATAAGTCGTTTAGAAA # Left flank : TTTTACTTTCTTTGAAAGTTACAGTTTTTTAGTCCGTAGGTTTCGGACGCTGTTAATTGATTGATATTTTCATTTTGGTGTCAGCGTCCGAATTAAGGGGATTTTTTGCGAAATCTCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCTGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCACTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCACTTGTTTGCTTTTGGGAAAGGTAATGGTAAGTCGTTTAGAAATAGTAGTGGAGTTTAAAATACAAACTTTATGAACCCTTTTTTTTGGCTAAAAATAAAACTATTAAAAATCAATATATTGCAAACGCGTTAAAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTATGTTTTTATAAACGATGTTTATAGTATGTAAGATTCTA # Right flank : TATTTTTGAAATATCTAAGACTTTTTGCTTTTATACTAAAACATGGGTATTTTCTGAAAGTTCTTGTCAAGGATTTGTGTTTTTTGCTTAAACACCTATATTTTCTGAAACTTCTTGACAAGCATTTTTTGGCTTTGGTGATAGGTTAGCGGTTGGCATTTTTACGCAAGTGACGCTGAGTTCACTTGCGTGGGTTGTGATTAGAATAGGAGTCTGGCTCTGATTGTGCCGGTGACGTTTTTAAGTTTTACTAATAACTCTTCGGCTTTGTTTTGCTCAACGCGATCAATATCAATCACCACATAACCAATTTTTGGATCGGTTTGCAGATACTGGGCTGAGATATTTAAGCCTTGTTCGGCAAATAGGGTGTTGATTGCGGTTAGTACGCCGGGCTGATTATGGTGAATGTTGATAAAACGGCTGGATCCTTTCGCCGGAATCGGTAATGATGCTTCCGGGAAGTTAACCGCCGATAGGGTGGCGCCGGTATCTGAGTA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGGCTGCATAAGTCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 1642741-1642413 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1642740 28 100.0 32 ............................ AACGACGACGGAAAAGGTACGCATACCGAACT 1642680 28 100.0 32 ............................ ATAGTATACTCCCCTGTAATCGACTATTACTT 1642620 28 100.0 32 ............................ TGGCCTATTAACTTTTGACCCTGTGATTTTAT 1642560 28 92.9 32 ............G......T........ TTGCTTAGATAAATCAACTCTTTTGAGTGATT 1642500 28 100.0 32 ............................ AATGTACGATCGTCTGCCCAATAAATTCCGTT 1642440 28 78.6 0 ..................C....TACTC | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.2 32 CTTTAAAGCTGCATAAGCTGTTTAGAAA # Left flank : TTTTACTTTCTTTGTAAGTTGCGGGTTTTTAATCCGCAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCATTACGGTGTCAGCGTCCGAATTAGGGGGATTTTATGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCTGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGGTTGGTGCACTTGTTTGTTTTTGTGGAAGGTCATGGTAAGCCGTTTGAAAAAAGTAATGGAGTTCAAAATACAAACTTTTTAAACCCTTTTTTTTAGCTAAAAATAAAAACATTAAAAATCAATATATTGCAAAAGTGTTAGAAAAAAGGGTTTTTAAACTTAAAATTGCTCTTTGTGTTTTTATAAACGGTGTTTATAGTATGTGGGATTCTA # Right flank : TGGCATTGAAACACCTTCAATATTCACTCAGTTAGGCTTAATTTAAAGGCAATTTTCCGAAAAAAATTTGCCTGCCTATAAGCTTAAGTATAAACTCAATAAAAAATGTAAAATTAGCAAAAAAGGAACATTAAGCAATGCGTATATTACATACAATGATTCGAGTAGGGGATTTACAACGTTCAATTGATTTTTATACCCGTGTAATGGGAATGCGGGTGTTAAGAACGAGCGAAAATACCCAGTATCAATACTCGTTAGCTTTTTTAGGTTATGGTGATGAATCAACTAGTTCGGTGATTGAATTAACCTATAACTGGGGAACAGATAAATATGACCACGGTACCGCTTTTGGGCATATCGCAATTGGCGTTGATGATGTGGCAAAAATGTGTGAAGAGGTTAAGCAAGCCGGCGGTAAGGTAACGCGTGAAGCGGGACCAGTCAAAGGTGGCAGTACCATTATCGCTTTTGTTGAAGACCCGGACGGTTACAAATTA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAAGCTGCATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 1644576-1644248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1644575 29 96.6 30 ............................G TTATATATTTAGGGGTTTAACCCTCTTTAA 1644516 29 100.0 31 ............................. AACCAACATGCAAGTTTATTCATTGCTGAAC 1644456 29 100.0 31 ............................. GCCAGCAGCAGGGGTTTTTCGTCCGTGTTCA 1644396 29 100.0 31 ............................. AGTAAATCAGTTACCGCTTGTAAATTTTTAG 1644336 29 93.1 31 ....................C...A.... AAATCGTATGTATCTGTCGTAAGATAGAGCC 1644276 29 72.4 0 T..T.T.......A...GG......G.T. | ========== ====== ====== ====== ============================= =============================== ================== 6 29 93.7 31 CTTCACGGCTGCATAAGCCGTTTAGAAAA # Left flank : TTTTTATTTTTCTAAAAGTTGCGGGTTTTTAGTCCGTAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCATTTCGGAGTCTGCGTCCGAATTAGGGGGATTTAGTGCGAAATCCCCCTAATGACCCCCTCGCAGCACCGCCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACATCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCGATCTAGTGCACTTGTTTGTTTTTGCGAAAGGTAATAGTAAGCCGTTTGAAAAAAGTAGTGGAGTTTAAAATACTAACTTTTTAAACCCTTTTTTTTAGCTAAAAATAAAACCATTAAAAATCAATACATTGTAAAAGTGTTAGAAAAAAGGGTTTTTAAACCTAAAATTGTCCTTTATGTTTTTATAAACGGTGTTTATAGTATGTGAGATTCTA # Right flank : TTTTTGAAATATCTAAAACTTTTGTTTTTATACTTAAACATGGGTGTTTTCTGAAAGTTCTTGTCAACGCTTTGTGTTTTTGCTTAAACACCTATATTTTCTGAAAGTTTTTTACAAAGTTTTTATTTTTCTAAAAGTTGCGAGTTTTTAGTCCGTAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCATTTTGCTGTCAGCGTCCGAATTAGGGGGATTTAGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGCCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCATTTGTTTGCTTTTGGGAAAGGCAACGATAAGCCGTTTAGAAATAGTAGTGGAGTTCAAAATAGAAACTTTATAACCCCTTTTTTTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGGCTGCATAAGCCGTTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 1652382-1651754 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1652381 28 100.0 32 ............................ TGTTGGCTTTATTATTTAATATTTTTTTCAGC 1652321 28 100.0 32 ............................ AGCCCGTAGTAGTAGATGCGGTTCTATGCAGA 1652261 28 100.0 32 ............................ ACCTGAAATCATTTCAAATTCAGCATTTGCAA 1652201 28 100.0 32 ............................ TAGCGCTAAATCAAAATGTAACCAGTCATCAG 1652141 28 100.0 32 ............................ GGACGCAACATAGGAAGAACGGGTATTTCTAT 1652081 28 100.0 32 ............................ CTGTAAGTTCTTATGAACTGTCTACCAGAATA 1652021 28 100.0 32 ............................ CTCCGTTAATAAAACACTCACTCGAACAATAC 1651961 28 100.0 32 ............................ CAATCCTGATTTAGTTATGTATGTCTATCCTC 1651901 28 100.0 32 ............................ TCTAGAAAAAGTAATTTTTCTGTATAGTTCGC 1651841 28 100.0 33 ............................ TGCCCACGCTTTCCCCCCACGCTGGAGCAACTC 1651780 27 71.4 0 T..T...-........AAG......G.T | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.4 32 CTTCACGGCTGCATAAGCCGTTTAGAAA # Left flank : TTTTTACTTTTATAAAAGTTGCATGTTTTTGATCTGCAAGTTTCGGACGCTGTTAATAGGTTGATATTTTCATTACGGTGTCAGCGTCCGAATTAGGGGGATTTAGTGCGAAATCCCCCTAATGACCCCCTCGCAGCACCGCCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTAACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCACTTGTTTGCTTTTGGGAAAGGTAATGGTTAATAGTTTAGAATTAGTAATGAAGTTCAAAATACAAACTTTTTAAACCCTTTTTTTTAGCTAAAAATAAAACTATTAAAAATCAATGTATTGTAAAAGCGTTAAAAAAAAGGGTTTTTAAACCTAAAATTGTCCTTTATGTTTTTATCAACGATGTTTATAGTATGTGGGATTCTA # Right flank : ATATATTTGAAAATATCTAAAACTTTTGTTTTTATACTTAAACGTAGGTGTTTTCTGAAACTTTTTGTCAATGTTTTGAGTTTTTTTCTTAATCAATTATATTTTCTGAAATTTCTTGACGAGATTTTTTAATTTTATGCCTAAACATCTTGTTTACTTAATGCCTTATTGGTTTTTTTATCGATGTGGTGATGCGTCTTTTTAATAGTGATTATTTGTTCTGTTTTTCGATAAATAGCTGCTTTATTCAGTTGAATGGTGATGAGTCAATCATTATTACTAAATTTTGCTAGTCTTTTAATGGAAAGATAGGTAGAATGCTTCGGCAATATTTTATCAACAATTCAACTCAATGGTGAATATTGTCATGTCTCGTATAGTAAAAGAAGCCCTCACGTTCGATGATGTTTTATTAGTTCCTGCTCATTCAACTGTTTTACCCAATACTGCTGATATCAGCACTGAGCTTACCCAAACCATTAGATTAAATATTCCGATGC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 1653388-1653001 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1653387 28 100.0 32 ............................ CGCGAGGTATATAATGATATTGATTATTCAGT 1653327 28 100.0 32 ............................ ATTTATCAAAAATGGCTAAAGTCGTAGCAATT 1653267 28 100.0 32 ............................ AACCGCATTCACAGCGTTAACGCCGTACCAAT 1653207 28 100.0 32 ............................ GATCACCACTTCGGGCAAAGTCCTGCCCGTAC 1653147 28 100.0 31 ............................ ATTCTCGTGAAGTTTTTTCTGTTGTTAGATC 1653088 28 92.9 32 .....A.....G................ ACAGTCGTATGTTTCTGCCGTAAGATAGAGCG 1653028 28 67.9 0 .....AG...TA.....GG.G....G.T | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 CTTTACAGCTGCATAAGCTGTTTAGAAA # Left flank : ATAATTTAGATCTTCAATAGTGTAGGTTTTTAGTCCGCAGGTTTCGGACGCTGTAATTGGTTGATATATTCAATTCGGTGTCTGCGTCCGAATTAGGGGGATTTGGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTAACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCACTTGTTTGCTTTTGGGAAAGGTAATGGTTAATAGTTTAGAATTAGTAATGAAGTTCAAAATACAAACTTTTTAAACCCTTTTTTTTAGCTAAAAATAAAACTATTAAAAATCAATGTATTGTAAAAGCGTTAAAAAAAAGGGTTTTTAAAACTAAAATTGCTCTTTATGTTTTTATAAACGATGTTTATAGTATGTGAGATTCTA # Right flank : ATTTTTGAAATATCTAAAACTTTTGCTTTATACTAAAACGTAGGTGTTTTCTGAAAGTTTTTGGCAATGTTTTGTGTTTTTGCTTAAACACCTATATTTTCTGAAACTTTTTGACAAGGTTTTTACTTTTATAAAAGTTGCATGTTTTTGATCTGCAAGTTTCGGACGCTGTTAATAGGTTGATATTTTCATTACGGTGTCAGCGTCCGAATTAGGGGGATTTAGTGCGAAATCCCCCTAATGACCCCCTCGCAGCACCGCCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTAACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCACTTGTTTGCTTTTGGGAAAGGTAATGGTTAATAGTTTAGAATTAGTAATGAAGTTCAAAATACAAACTTTTTAAACCCTTTTTTTT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAGCTGCATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 9 1668863-1668535 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1668862 28 100.0 32 ............................ ATTTAGTAATAATTTTACTTTATGAAGTATAT 1668802 28 100.0 32 ............................ TCTAAGGTAACATATTAACACAATATAAATCA 1668742 28 100.0 32 ............................ GTCATTCATTTCAACATGAACATCTACAACCA 1668682 28 96.4 32 ........T................... AGCATCAAGATTCACAGCATTAAAAAATGCCT 1668622 28 96.4 32 ..................T......... GGAAGCGTCTTTATTGTCGAGCGGTAGCGAAA 1668562 28 82.1 0 ...........T.....GG......G.T | ========== ====== ====== ====== ============================ ================================ ================== 6 28 95.8 32 CTTCACGGCTGCATAAGCCGTTTAGAAA # Left flank : TTTTACTTTTTTTGTAAGTTGCACGTTTTTTGTACGCAAGTTTCGGACGCTGTTGATTGGTCGATATTTTCATTTCAGTGTCTGCGTCCGAATTAGGGGGATTTTATGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAAGTGCGGGTTGGTGCATTTGTTTGCTTTTGGGAAAGGTCATGGTAAGCCGTTTGAAAAAAGTAATGGAGTTCAAAATACAAACTTTTTAACCCCTTTTTTTTAGCTAAAAATAAAAACATTAAAAATCAATATATTGCAAAAGCGTTAGAAAAAAGGGTTTTTAAACTTAAAATTGATCTTTGTGTTTTTATAAACGATGTTTATAGTATATAAGATTCTA # Right flank : ATTTTTGAAATATCTAAAACTTTTGTTTTTATACTTAAACATGGGTTTTTTCTGAAAGTTTTTGTCAAGGCGGGTTTTTGGTATCGTGGTTGTTTTGGTGATTTTGGGTTGGTTAACTTTATCGCTGGTTGTGACTTTGCGATAAAGTTTTGGTTTTGGTGTTGTGCCGGTTAGTTTGTGTGGTTTTATTTTTCTGGGGTGTTTGGTTGTCGGGGTAGGGTTAGGTTGCTGGTGTCTACGCCTTCAATTTGCAGTAATTTTATTTTTTTATCGATGCCGCCTGCATAGCCGGTTAGGTTGCCGTTTGTTCCTATCACTCGGTGGCAGGGGATGATGATTGAGATTGGGTTGTGTCCGACTGCGCCACCAACCGCTTGGCTGGACATCTGTTGTTTATTTAGCGCTGATGCGATTTGTTTGGCTATGTCGCCATAGGTGATAAGTTGTCCATAAGGGATTTTACATAAGATATCCCAAACTAAATAGCGAAACGGGGTGCC # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.70,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 10 1707752-1707363 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1707751 28 100.0 32 ............................ AGTCGATGCCAGCTCAGGAGCGCCGTTTGATG 1707691 28 100.0 32 ............................ ATTAGCAACACTACAAACACTGAACGCAAATC 1707631 28 100.0 32 ............................ ATTGACGGCAGATTCAAATATGAATATATAGG 1707571 28 100.0 32 ............................ AACGCGCTTTAACGCTTCTGATGTCAATATGT 1707511 28 100.0 32 ............................ TCATCCAAATCCGCTGAATTATCACCAGAGCC 1707451 28 100.0 33 ............................ TACTGTAGGGGGCTTTCAATCTTTCACTAATCT 1707390 28 89.3 0 .....C.....C......C......... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 32 GTTTAAAGCTGGATAAGCTGTTTAGAAA # Left flank : TTATACTTTTATTGAAAGTTGTGGGTTTTTGGTTTGCAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCATTACGGTGTCAGCGTCCGAATTAGGGGGATTTGGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTGACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCACTTGTCTGTTTTTGTGGAAGGTAATGGTAAGTCGTTTAGAAATAGTCGTGGAGTTAAAAATACAAACTTTATAACCCCTTTTTTTTAGCTAAAAATAAAAATATTAAAAATCAATATATTGCAAAAGCGTTAGAAAAAAGGGTTTTTAAACCTAAAATTGCACTTTGTGTTTTTATAAACGATGTTTATAGTATGTGAGATTCTA # Right flank : CAACAATTTCCTGTTTTTTTACCAGACAAAAACTTTACAACTGCATAGGATTATGGATATTTTTGTAATATCTAAAACTTTTGTTTTTATACTAAAACATAGGTATTTTCTTAAACTTCTTGTCAATGTTTTTTAGGCTTTGCTTTTATATCACATTGCTTTGTATTAGTAATTTTCGTTGCTGGGTAGGGTTGATAATTTTTTTTTATTATTAAATTGTTAAATATCACGTTATATTATTTAGCCAAAATTTAGTCACGAGAATTTATTATGAAAACATTAGTAAAAGCATTGTTTATAATGGGTGGTTTTATTTTTCCTTTGGTTAGTCATGCGGCTTTGCCTGAGACGATTAAAATTGGGGCTGATACGTCTTATGCGCCTTTTGATTTTATCAATGCCGAGGGGGAGATCACCGGTTTTAATATTGAGATTACGCAAGCTTTATGTGAGAAGGCTCAAGTTAAGTGTATTTTTCAGTCGACTGATTTTGATGCGTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAGCTGGATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 11 1708701-1708373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 1708700 27 100.0 33 ........................... GATTTCGGTTACTTTTGATTCTGCGCCGGTTTG 1708640 27 100.0 33 ........................... TTGCAGCTTTCGAATAACTCTGAACAAATCATG 1708580 27 100.0 33 ........................... AGCAGCGGGTGTTTTTTGCCCATGTTCGTGCTC 1708520 27 96.3 32 ...G....................... AAGCATCATGCTAATACCGATCCCCGTTAATA 1708461 27 85.2 33 C................C...A.T... TCAGAACACTTACCAAAAGCTTTATCTAGCATA G [1708457] 1708400 27 85.2 0 .....G..........GA.......T. | T [1708377] ========== ====== ====== ====== =========================== ================================= ================== 6 27 94.5 33 TTTACAGCTGCATAAGCTGTTTAGAAA # Left flank : TATACTTTTATTGAAAGTTGTGGGTTTTTGGTTTGCAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCATTACGGTGTCAGCGTCCGAATTAGGGGGATTTGGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTGACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCATTTGTTTGTTTTTGCGAAAGGTAATGGTAAGTCGTTTAGAAATAGTCGTGGAGTTAAAAATACAAACTTTATAACCCCTTTTTTTTAGCTAAAAATAAAAATATTAAAAATCAATATATTGCAAAAGCGTTAGAAAAAAGGGTTTTTAAACCTAAAATTGCACTTTGTGTTTTTATAAACGATGTTTATAGTATGTGAGATTCTAG # Right flank : TTTTTGAAATATCTAAAACTTTTGTTTTTATACTGAAACGTGGGTATTTTCTGAAACTTTTTTACAATGATTTGTGTTTTTACTTAAACACCTATATTTTCTGAAAGTTCTTGACAAGGTTTTATACTTTTATTGAAAGTTGTGGGTTTTTGGTTTGCAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCATTACGGTGTCAGCGTCCGAATTAGGGGGATTTGGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTGACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCACTTGTCTGTTTTTGTGGAAGGTAATGGTAAGTCGTTTAGAAATAGTCGTGGAGTTAAAAATACAAACTTTATAACCCCTTTTTT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTACAGCTGCATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 12 1709651-1709323 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 1709650 27 100.0 33 ........................... GTCAGCCGCAGCTGACGCATCAAGAATTGCATG 1709590 27 100.0 33 ........................... TTGCAGCTTTCGAGTAACTCTGAACAAATCATG 1709530 27 100.0 33 ........................... AGCAGCGGGTGTTTTTTGCCCATGTTCGTGCTC 1709470 27 96.3 32 ...G....................... AAGCATCATGCTAATACCGATCCCCGTTAATA 1709411 27 85.2 33 C................C...A.T... TCAGAACACTTACCAAAAGCTTTATCTAGCATA G [1709407] 1709350 27 85.2 0 .....G..........GA.......T. | T [1709327] ========== ====== ====== ====== =========================== ================================= ================== 6 27 94.5 33 TTTACAGCTGCATAAGCTGTTTAGAAA # Left flank : TTATACTTTTATTGAAAGTTGCGGGTTTTTGGTTTACAGGTTTCGGACGCTGTTGATTAGTCGATAATTTCAATACGATGTCAGCGTCCGAATTAGGGGGATTTTGTGCATAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGGTGGGTGCACTTGTTTGTTTTTGGGAAAGGTAATGGTAAGCGGTTTAAAAATAGTAGTGGAGTTTAAAATACAAACTTTATAAACCCTTTTTTTTAGCTAAAAATAAAATATTAAAAATCAATATATTGCAAAAGCGTTAGAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTGAGTTTTTATAAACGATGTTTATAGTATGTGAGATTCTAG # Right flank : TTTTTGAAATATCTAAAACTTTTGTTTTTATACTGAAACGTGGGTATTTTCTGAAACTTTTTTACAATGGTTTGTGTTTTTACTTAAACACCTATATTTTCTGAAAGTTCTTGACAAGGTTTTATACTTTTATTGAAAGTTGTGGGTTTTTGGTTTGCAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCATTACGGTGTCAGCGTCCGAATTAGGGGGATTTGGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTGACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTAACCTCGCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCATTTGTTTGTTTTTGCGAAAGGTAATGGTAAGTCGTTTAGAAATAGTCGTGGAGTTAAAAATACAAACTTTATAACCCCTTTTTT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTACAGCTGCATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 13 2047331-2047002 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2047330 28 100.0 32 ............................ ATGATAGTGCAACTCGTCACCTTTTTTTACAG 2047270 28 100.0 32 ............................ AGTGCAAAGCCATTGTAAGTTTGCGCCTGTTT 2047210 28 100.0 32 ............................ GTCAACCGCGGCTGATGCATCAGCAATGGCAT 2047150 28 89.3 32 ...........T.....T......A... TATACCATTTGCCACTGCGGCCGCTAGAGCTT 2047090 28 89.3 33 .........T.....A........A... ACGGTGATGCCACATCAACAATGCCGAACGGCA 2047029 28 71.4 0 ...CA....T.A.C.A..C.....A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 91.7 32 CTTTGCAGCCGCATAGGCTGTTTAGAAA # Left flank : GTTTTATACTTTAATTAAAAGCTACAGGTTTTTTGTCTGCGGGTTTCGGACGCTGTTGGTTGGTTGATATTTTCATTTCGGTGTCTGCGTCCGAATAGGGGGATTTTATGCGAAATCCCCCTATACCCTCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTAACCTCACTCAGTTGTCGGCGCTTTGTGAAGGTGCGGGTTGGTGCACTAGTTTGTTTTTGTGGAAGGTCATGGTAAGCCGTTTGAAAAAAGTAATGGAGTTCAAAATACAAACTTTTTAAACCCTTTTTTTTAGCTAATAATAAAAACATTAAAAATCAATATATTGCAAAAGCGTTAGAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTATGTTTTTATAAACGATGTTTATAGTATGTAAGATTCTA # Right flank : CATCGCTGTAGCACAGCAAGTTAGTAAAGTAACCTTAGGGCTGTAAAGCCCCAAAAGTTGAGTTATAAGTTTTTTAAAGCTCTAAAATCTCTGTGCTCGATAGCACAAAAATGCTATTTTGCTTTTTCTGTACAATTATTATTACAATGATTATAGTAGCTTATATTTTGAATTAAGATTAGTTTCGGTCGCTTGTAATATTATGAAACTTCAACAATTACGTTACATTTTAGAAATAGCCCGCTCAGGCTCGATTAATGAAGCGGCTAAAAATTTGTATATTACCCAACCCAGTTTATCTACTGCGGTCAAGGAGTTGGAGGCTGAATTTGGCATTGAGATTTTTGTGCGAACTTCAAAAGGCGTTTCGCTATCAACCGACGGTGTTGAGTTTTTAGGTTATGCCAAACAGGTTTTGGATCAGGCTGAATTATTAGAACAGCACTATGCAAAAAAAGAGCCGTCTAAACAGCTTTGCAGTATATCGACACAACATTATG # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGCAGCCGCATAGGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 14 2137487-2136559 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2137486 28 100.0 32 ............................ TGACGTTCTAGTGATTGATTTTCTAGTTCACG 2137426 28 100.0 32 ............................ TTTCGACCCCAGAGAAGAGCCGAGCTTTCCTC 2137366 28 100.0 32 ............................ GCCTTCAACGTCTAATGTGCGATCGTCCGCCC 2137306 28 100.0 32 ............................ AATTTTGTCGGCTCGAAAGTGATATCTGTACC 2137246 28 100.0 32 ............................ TGTGCGGTTTTTTATTGCCTTAACCCATTAAA 2137186 28 100.0 32 ............................ AGGCTTTAAATCGTCTATCTAATAATTATAAA 2137126 28 100.0 32 ............................ AACACGGAATCAGCTAAAACACAGTTTGGTGC 2137066 28 100.0 32 ............................ ATGACCAGTAAAACCGCCCGGTTTAGCGCTGT 2137006 28 100.0 32 ............................ CATACCGTTTGCTTTCGGTTTAAAAAACCATC 2136946 28 100.0 32 ............................ TATCCAAATCAACAATGCGAAAATATGGAATT 2136886 28 100.0 32 ............................ TTCCACCGCATCCCATGTTGCATTTAAAGATG 2136826 28 100.0 32 ............................ GCTTTGCTTCGGAAGAAGATAAGGGTCTGATC 2136766 28 100.0 32 ............................ TATAAATAAAAGGGCACTTGATTTATCTCATT 2136706 28 100.0 32 ............................ TTTTGGAGGCTTTCCAACCGCCTCAAAACTCT 2136646 28 92.9 32 ..................C...A..... TCAGAACCTTTACCAAAAGCTTTATCTAACAT 2136586 28 71.4 0 A...A....T.....A.GG......G.T | ========== ====== ====== ====== ============================ ================================ ================== 16 28 97.8 32 CTTTGCAGCCGCATAGGCTGTTTAGAAA # Left flank : GTTTTTACTTTCTTTGTAAGGTGCGGGTTTTTAATCCGCAGGTTTCGGACGCTGTTAATTGGTCGATATTTTCATTACGATGTCAGCGTCCGAATAGGGGGATTTTATGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTGACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGCGCAATCTGGTGCACTTGTTTGTTTTTGAGAAAGTTAATGGTAAGTCGTTTAGAAATAGCAATGGAGTTTAAAATACAAACTTTTTAACCCTTTTTTTAAGCTAAAAATAAAACCATTAAAAATCAATATATTGCAAAAGCGTTAAAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTGTGTTTTTATAAACGATGTTTATAGTATGTAAGATTCTA # Right flank : ATTTTGGAAATATCTAAAACTTTTGTTTTATACGAAAACATGGGTGTTTTCTGAAAGTTTTTGGCAAAACTTTATTTTTTTGCTTAAACACCTATATTTTCTGAAACTTCTTGACAAGGTTTTATACCTTAATTGAAAGTTGTAGGTTTTTAGTCCGCAGGTTTCGGACGCTGTGGGTTTGGTGGTTTTTTCATTACGATGTCAGAGTCCGAATAGGTGTATATTGAGCGAAATCTTCCTATACCCCCCCACGCAGTACCTTACAAAGCGTTTTGCTACAAAGTTAATTCATCGCTGAGATTATCATTATAGATAGAATTCAACTATTCAATATTTTTATAAGCTGACATAAACATCTATTTTATATTATATTATCGAGCATAGTGTTTACGAATGGATAAGTGAAGATTAGTATGAATAAGGAAATTTTTTTTAATAACAAATATGTTATTTTATTTCTCTTTCTGGTTGTGTGTTTTACATGGGGAACAACATGGATT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGCAGCCGCATAGGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 15 2138495-2138107 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2138494 28 100.0 32 ............................ ATAACCAACTGAGTGCTGACTTTTCCGCTTTT 2138434 28 100.0 32 ............................ ATTAGCGCCCCAGCTTCACGAATCGGATAACC 2138374 28 100.0 32 ............................ ATTGTGACTGGGATAGTTTTTTACTACGAAAA 2138314 28 100.0 32 ............................ TCGCCTTGTTTTTTGCCAAATCCATTTATACC 2138254 28 100.0 32 ............................ TTCTTGATATAGAGCGATTGCCATCTCCCTTA 2138194 28 85.7 32 ...C.CG....T................ TGAAGCTGTTCACTGTCTAGGTCATGATATAG 2138134 28 75.0 0 .....C..........AGG.G....G.T | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 CTTTAAAGCTGCATAAGCTGTTTAGAAA # Left flank : TTTTTACTTTCTTTGTAAGTTGCGGGTTTTTAATCCGCAGGTTTCGGACGCTGTTAATTAGTCGATATTTTCAATACGGTGTCAGCGTCCGAATAGGGGGATTTTGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTGACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGCGCAATCTGGTGCACTTGTTTGTTTTTGAGAAAATTAATGGTAAGTCGTTTAGAAATAGTCGTGGAGTTTAAAATACAAACTTTATGAACCCTTTTTTTTGGCTAAAAATAAAACTATTAAAAATCAATATATTGCAAAAGCGTTAAAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTATGTTTTTATAAACGATGTTTATAGTATGTAGGTTTCTA # Right flank : ATTTTTGAAATATCTAAAACTTTTGTTTTTATACTAAAACATGGGCGTTTTCTGAAACTTTTTGACAAAGGTTTGTGTTTTTTGCTTAAACACCTATATTTTCTGAAAGTTTTTGACAAGGTTTTTACTTTCTTTGTAAGGTGCGGGTTTTTAATCCGCAGGTTTCGGACGCTGTTAATTGGTCGATATTTTCATTACGATGTCAGCGTCCGAATAGGGGGATTTTATGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTGACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGCGCAATCTGGTGCACTTGTTTGTTTTTGAGAAAGTTAATGGTAAGTCGTTTAGAAATAGCAATGGAGTTTAAAATACAAACTTTTTAACCCTTTTTTT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAAGCTGCATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 16 2139332-2139064 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2139331 28 100.0 32 ............................ ATATTTTAGACACTCCGAGAACAGTGGGCGTT 2139271 28 100.0 32 ............................ TTTAATGAACGTAGATTGAGAATATGCCCACG 2139211 28 96.4 32 ....................C....... ATCGCTTTTTTAATAGCTAAATATCTATTTAT 2139151 28 85.7 32 ...G.......T......C.....A... TCAGAACCCTTACCAAAAGCTTTATCTATCAT 2139091 28 82.1 0 .....C...........GG......G.T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.8 32 CTTTAAAGCTGCATAAGCTGTTTAGAAA # Left flank : TTTACTTTCTTTGTAAGTTGCGGGTTTTTAATCCGCAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCAATACGGTGTTAGCGTCCGAATTAGGGGGATTTGGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTGACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTGACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTACACTTGTTTGTTTTTGTGGGGAGGTAATGGTTAATCGTTTAGAATTAATAATGAAGTTCAAAATACAAACTTTTTAAACCCTTTTTTTTAGCTAAAAATAAAACCATTAAAAATCAATATATTGCAAAATCGTTAGAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTGTGTTTTTATAAACGATGTTTATAGTATGTAGGTTTCTA # Right flank : ATTTTGGAAATATCTAAAACTTTTGTTTTATACGAAAACATGGGTGTTTTCTGAAAGTTCTTGACAAGGTTTTTACTTTCTTTGTAAGTTGCGGGTTTTTAATCCGCAGGTTTCGGACGCTGTTAATTAGTCGATATTTTCAATACGGTGTCAGCGTCCGAATAGGGGGATTTTGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTGACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGCGCAATCTGGTGCACTTGTTTGTTTTTGAGAAAATTAATGGTAAGTCGTTTAGAAATAGTCGTGGAGTTTAAAATACAAACTTTATGAACCCTTTTTTTTGGCTAAAAATAAAACTATTAAAAATCAATATATTGCAAAAGCGTTAAAAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAAGCTGCATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 17 2140342-2139954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048265.1 Gilliamella sp. ESL0405 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2140341 28 100.0 32 ............................ GGTAAAAAAAGTACTTCACTAAATGCATGTTC 2140281 28 100.0 32 ............................ GATTGAAAGAGTGTTTTCACACGGCGGACTGG 2140221 28 96.4 32 ........T................... ACGGCGTTTAGTTTTCGTTGGTACAACAAATC 2140161 28 100.0 32 ............................ AGCAAAATGAAATAGCACCGAATATTGTATAT 2140101 28 85.7 32 ...T.AA....C................ GCACCGTTTTCGGCATACATTAGCAACAAACT 2140041 28 85.7 32 ...G.AA....C................ TCAGAACCTTTACCAAAAGCTTTATCTGGCAT 2139981 27 75.0 0 ...TG......C....-.G....G..T. | A [2139962] ========== ====== ====== ====== ============================ ================================ ================== 7 28 91.8 32 CTTCACGGCTGTATAAGCTGTTTAGAAA # Left flank : TTTTACTTTCTTTGTAAGGTGCGGGTTTTTAATCCGCAGGTTTCGGACGCTGTTAATTGGTCGATATTTTCATTACGATGTCAGCGTCCGAATAGGGGGATTTTATGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTAACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCCTGTTTGGCGTGCTGACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTGCATTTGTTTGTTTTTGTGGGGAGGTAATGGTTAATCGTTTAGAATTAGTAATGAAGTTCAAAATACAAACTTTTTAAACCCTTTTTTTTAGCTAAAAATAAAACCATTAAAAATCAATATATTGTGGAAGCGTTAGAAAAAAGGGTTTTTAAACCTAAAATTGCCCTTTGTGTTTTTATAAACGATGTTTATAGTATGTAAGATTCTA # Right flank : TTTTAAAAATATCTTAAATTTTTGTTTTCATACTGAAACATGGGTGTTTTCTGAAACTTTTTGACAATAGTTTGTGTTTTTTGCTTAAACACCTATATTTTCTGAAAGTTTTTGACAAGGTTTTTACTTTCTTTGTAAGTTGCGGGTTTTTAATCCGCAGGTTTCGGACGCTGTTAATTGGTTGATATTTTCAATACGGTGTTAGCGTCCGAATTAGGGGGATTTGGTGCGAAATCCCCCTAATAACCCCCTCGCAGCACCACCCAAAGCGGTCTTCGACTGCCCTCCGCCTTCGTTCGGTCTTGACGCACCGGCGCTGATTTGTTCCGGACAAAGCAGCGCCTCGCCAAACATCCTTGTTTGGCGTGCTGACCTCTCTCAGTTGTCGGCGCTTTGTGAAGGTGCGGTCTGGTACACTTGTTTGTTTTTGTGGGGAGGTAATGGTTAATCGTTTAGAATTAATAATGAAGTTCAAAATACAAACTTTTTAAACCCTTTTT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGGCTGTATAAGCTGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //