Array 1 293-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCY010000103.1 Flavobacterium psychrophilum strain 2500 s contig00103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 292 41 100.0 28 ......................................... CCGGCAAAAGCACCTCGATTAATAGTAA 223 41 100.0 28 ......................................... CTGAAAAAAGCACTATTTTTAATATCAG 154 41 100.0 28 ......................................... TTGAAAAAAGTACCTTCCTTAATAGTAG 85 41 92.7 0 .A....................A.................G | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 98.2 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : GCCTCCAAAAACATAATCTCCAATAGAAGTCACAGAATTAGGAAT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 117-1601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCY010000030.1 Flavobacterium psychrophilum strain 2500 s contig00030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 117 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 192 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 268 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 344 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 420 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 496 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 571 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 647 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 723 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 799 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 875 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 950 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1026 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1102 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1177 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1253 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1328 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1404 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1480 46 100.0 30 .............................................. AAGCGTTTTTTACTTCGTCGCTTTTCTCTT 1556 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 20 46 98.4 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : ACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 190-427 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCY010000084.1 Flavobacterium psychrophilum strain 2500 s contig00084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 190 31 96.8 38 ....C.......................... AATTCTGTGATTACTATTAATCGAGGTGCTTTTGGCGG 259 31 96.8 38 .......A....................... AATTCTGTGACTACTATTCGAGAGAATGCTTTTGCAGA 328 31 100.0 38 ............................... AATTCTGTGACTGATATTGAAAATGGTGCTTTTTTCAG 397 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 4 31 98.4 38 TTGTTCTGGTTTAACATCAGTTACAATTCCT # Left flank : CTTTACTGCTAAGGTAGCTAGAAACCCTGATTTTAGTGGAGTTGCGGTAATACCAGAAACAGTAGCTTATAATTCAAAAAACTATATTGTGACTGCTATTGGAGAATCTGCTTTTATACAATGCAATAATTTAACATCGGTCACCATTCCTAATTCTGTGACTACTATTGGAGATTATGTTTTTGCAGAT # Right flank : | # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTTCTGGTTTAACATCAGTTACAATTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 2-318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCCY010000087.1 Flavobacterium psychrophilum strain 2500 s contig00087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 2 41 100.0 28 ......................................... CCGGCAAAAGCACCTCGATTAATAGTAA 71 41 100.0 28 ......................................... TTGAAAAAAGCCTCATCTCCAATAGAGG 140 41 95.1 28 ......................A.................G CCTCCAAAAACATAATTTCCAATAGAGG 209 41 87.8 28 .............G..G.....G.........T...G.... TCGGAAAAAGTATAATTTCCAATAGTAG 278 41 78.0 0 .......G.....G..G.....C.........TT.TTG... | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 92.2 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : GT # Right flank : TGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //