Array 1 361325-362084 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKTS01000001.1 Klebsiella pneumoniae strain CVUAS 4804.2 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 361325 28 96.4 33 ..........T................. TGATCCTGAATGCCACCAACAGCAAGATGCTGA 361386 28 96.4 33 ..........T................. GATGACGACTACATGAGTATGGTGTCCGATCGG 361447 28 96.4 33 ..........T................. TTGATAGGATTGATGAAGGAAAAAACCAAAAGA 361508 28 96.4 33 ..........T................. CCTCTGCAGGCTATCGACGTCTCTAAAAACGTT 361569 28 100.0 33 ............................ CTGGTCAAGTTGGTTTCCTGGCGTGGCAGCGTT 361630 28 100.0 33 ............................ TATTTATTATCAGGATATGCCTGTGTGGGGGGC 361691 28 100.0 33 ............................ TCCAGCGAACAATGGCGGTGGATATGGCGGCGG 361752 28 100.0 33 ............................ CCGATATCCGCGAAAACGGGCTTGACGCGGTAC 361813 28 100.0 33 ............................ TGATCAGCGAGCTGCTGATTGATATCGAAATCG 361874 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 361935 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 361996 28 92.9 33 ..............T........A.... TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 362057 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.5 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCAGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGATATAGTTATCTTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCATATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19070-18310 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKTS01000045.1 Klebsiella pneumoniae strain CVUAS 4804.2 NODE_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 19069 28 100.0 34 ............................ CGTCGGGTATAAATGGCTGGGGGCATACATGGGG 19007 28 100.0 33 ............................ CTATCCGCGTGGATCTGGGACGGCTGTGCAGCC 18946 28 100.0 33 ............................ TGGGCACCTGTAGTAAATGCGGGAAGACGTGCG 18885 28 100.0 33 ............................ TCAGCGCCTTGGTCATTTCGGCAATGAAATTAC 18824 28 100.0 33 ............................ CAGGCCGCCGCCGCACGCGCCAGCCGTTTACGC 18763 28 100.0 33 ............................ TAGATCCGGATTCCTTTACCAGCGCCACGCAGA 18702 28 100.0 33 ............................ CGCGGCGGGTTCCATTTTCCCGCAATAGCCGCA 18641 28 100.0 33 ............................ CCATACTGATGCCATGATGACCACCTTAAAAGA 18580 28 100.0 33 ............................ CGGATGGACAGGTCTTTATTCCCTTGCTGCAGG 18519 28 100.0 33 ............................ TACTCGGATAGTACAAACAGGAACCGGCTATGC 18458 28 100.0 33 ............................ GCGTGGACTACCAGGGTATCTAATCCTGTTTGC 18397 28 92.9 33 ......G.T................... CCCCGCTTTTGAGCACGCGCTGGCATTCGTTCT 18336 27 85.7 0 ......A...T.T........-...... | ========== ====== ====== ====== ============================ ================================== ================== 13 28 98.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTTATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAACCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //