Array 1 30924-29362 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLN01000009.1 Haloarcula sp. Atlit-120R P_contig000009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 30923 37 100.0 35 ..................................... GAGTATGGTTGATCGAGGAGCATCTCCTCGACTCG 30851 37 100.0 38 ..................................... GTGCTTCACGCCGTGAACAACGATACCCAGTCTGGAGG 30776 37 100.0 35 ..................................... TATTCCCCGCATAAATATAAATATCGACTCATAAT 30704 37 100.0 35 ..................................... TATTCCCCGCATAAATATAAATATCGACTCATAAT 30632 37 100.0 35 ..................................... ACTGCCGCCATCAATGAGTGTGGCCTTTCCCTGCC 30560 37 100.0 36 ..................................... CTGCTGTCTGTCGAGTTTGCCACGAAACAAGCCACT 30487 37 100.0 36 ..................................... GATGTGTCGAAGCTGCAGGAAGAGTTAGAACAGATC 30414 37 100.0 36 ..................................... AACACTTGCAGGAGTCTCAAGAGGTTATGACGACGA 30341 37 100.0 37 ..................................... AAGCTCCGAGAGGTCCGCGTCAAGCTGGCGTTCGGCG 30267 37 100.0 35 ..................................... CTGTTGAGGACGACAAACCGCCAGCCGTTGATATC 30195 37 100.0 34 ..................................... ATGACCGCCCGTCAGAAATTGCCATCCCAAACAA 30124 37 100.0 32 ..................................... TACTGAGATGCGTTGCAGCCGACCCACGACTC 30055 37 100.0 36 ..................................... CAACTCGTCAACATCGTGGAGGTACTCGTACTCTCT 29982 37 100.0 35 ..................................... TGGGATATCGATGAATGGGAATATCTGAATGTCGT 29910 37 100.0 36 ..................................... TAACGGATGTTGAGACGGCCTGACTGGTGTCGTTGA 29837 37 100.0 36 ..................................... TCGTCTTCGGTCTCTCCCTCGTCGCTTTCCTGCTCG 29764 37 100.0 35 ..................................... TCGCTTCGACCGGGATGGTGCTCACGAACGTCTCG 29692 37 100.0 39 ..................................... AGGGAGTACACGAACCCTGCCCTGTCGATGAACCGGAGT 29616 37 100.0 36 ..................................... TCGCTTGATCCAGATGCAAACGACCAACGTTGGTAC 29543 37 100.0 34 ..................................... TGTATCGGCTCACAGAATCCGGTCGGCAGATGGC 29472 37 100.0 37 ..................................... TATAACCGTTCCACTGAGCAGTCATTCAAACAGCTGA 29398 37 97.3 0 ...................T................. | ========== ====== ====== ====== ===================================== ======================================= ================== 22 37 99.9 36 GTCGCGACGGCCAGAAAACCCAGCACGGGATTGAAAC # Left flank : TTGAATACTCAGTCACACGCCGAAAGGCTGTTCGCCAGCAAACAATCCTGTTGCGGAAGGCGATTACCGAGGAACTGGACGAGTACCACGCCCTGACCTTTTCGAAATAACCATGCGCCTGGCAATAGCTTACGACGTAAGTGACGATGCAAATCGTCGCCAAGTGTACCGAACGCTCCAGCGATACGGAGCTTGGCGACAGTACAGCGTGTTTGAGGTTGATGTGACCAAAGCCGAGCGTGTCGAGCTTCAGGACGAACTGGAATCACATATCGAGCCAGCCGACGGTGACCGAATTCGGATTTACCGTTTGTGTCAGTCCTGCCAGGATAACACAACCGATATCGGGTCCGATCCGCCCGATGAACAATCCAACGTTCTCTGAACAGAGCTACGTGGACCTTTATTAAATGAGTGTACAGCCCCGGTCGACGTAATCGGGCCTCGATTTGGCGGCCTGAGAAAGACTTTTCAGCCCTATAACCGTATTTTCACCCCCT # Right flank : AGCGTACAGACACCGCCGAGAATAGCGTCTTCTCTATAGATGCAGCGACAGCCCAGAAGCCCACCGCTGGAGTGAAATCATAACTCCCGCATTCAACAATGAATCAGATCTACAACGATTGTTTGGCCGGCTTCAAACACCATCGTCTCTGGAGAGAAACCGCCCTATGTCGAACTAACCGGCGCCACGTACTGACTCTTAACTTTCTCTCCTTCTCGCCACTGGATATAGTAATACCCCCGTTCGTCGATTGTTTTCGTCGTTAGCGTCCCCTTCGAGCGAGCGATCTCCGCAGCCTCGTAGGCCTCGTTGATTTTCTCGTCCCAGTCGTCCTCGTCCCACCCTTCGGGCGCCTCGATGCCGACTGCGTCGTCTGTTTCGTCGTCTTCTTCGAGCGCTGCGGCCAGCTCGTCGACGGCGGCAACCGCGTCCTCGTGCGCATCACGACATTCCTGCTCCAGCGCCTCGACGTCGATGCGTTCCAGCGCCGACAGCGCTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGGCCAGAAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 2 41651-42267 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPLN01000009.1 Haloarcula sp. Atlit-120R P_contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 41651 37 100.0 35 ..................................... TCGAGTGCCCGCGGTGTGGGACCGTCCGCGATGCG 41723 37 100.0 39 ..................................... TTCGAAAGAGGCCGCAAAGCCGCACCAGAGGAATATACC 41799 37 100.0 34 ..................................... AGTCTGGTATGAACTTGTCCACGATCACCGCCTT 41870 37 100.0 36 ..................................... TCGATGACTGCCGAGGCATCGTCTGACCCATCCAGG 41943 37 100.0 34 ..................................... ACGCTGTCGCGTCAGGACTTGGGCCAGCCGCCCC 42014 37 100.0 35 ..................................... CCTGCTCGATCAGTGCATCGAGAGCGTCCGTGTAG 42086 37 97.3 36 .........................T........... CGGGAGTACTCCACGCCCTCGCGGTAGAACTCGTCT 42159 37 100.0 35 ..................................... ACCGCTACAGCCACCGCTTCCAGAACACGAGCAGC 42231 37 94.6 0 ...................................TG | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 99.1 36 GTCGAAGCGGTCAGAAAACCCGAACCGGGATTGAAAC # Left flank : GGCAGCAGACGGTGAGCGAATTGTTTCGCTCGGTGGCGGAGCACGGGACGTGTTGCTGCCATTCACGATTGCTGCAATGACACACGTTCGATTGCTGTCTGCTGCACTGTTTTTCAGCGATCTTGATGGAACAGTGCGGGAGTGGGATCTCCCCCGGTTGACTGCCCAAATTCAACAGACGACGATGTCAACACTCCAGACGATTGCCAATGCAGAGGGGGCAATCTCGATACCCGACCTGACTGCGGAGACTGGTAACTCGAAAAGTACGGTGACACGCCACGTCACCGCACTTGCCGATGCAGGAGCAATCGAGACATGGACAGACGGGAAAACCAAGTTCGCACAGGTGACTCTGACCGGACAATTGCTCCTTCGAGATGATGTCTGACTACGTGGACCTTTATTAAATGAGTGTACAGCCCCGGTCGACGTAATCGGGCCTCGATTTGGCGGCCTGAGAAAGACTTTTCAGCCCTATAACCGTATTTTCACCCCCT # Right flank : GTCGACACTGTGAGTGAGCGATTAGCGACAGCACAAGCTTGTCGGTCGGGTGCCGCTCTGGCCACTCATTGAGGTGATTACTGCCTCCCCAACGTCAGCTCATCGACGTGGTCAACCCTCATACTCGTCAAACGACATAGCTAAAGCTAACAGACCGGGCAATGGCGTGCCCACGAGCGTGCTGACAAGCGGTTCAGTGTAGCCCTTCAGTCCGCGACAGTCCCTCCATCAGTCAGTGCCGACGGCTGCTGGCCGCCACCATAGGAGCCCAGCGTCGTCTCGCCGCTATCAGCGAGCTTCGAGTCGCCGTCGGCGTTCGCGAACTCTCTGATGGTCCGGGCCATATCGAGGTGGTCAATTTCGAGTTCGGTCAGATTCAGGCGCAGCACCTGCTGTCTGTCTGGTTTGCCAGTCCCGATCCCGAAGTGCTCAGCGGCGTCTTGCATCACTTCATGCATCATTGGTCTCGAGATTTCGTCGTCGAACACCTCCTGCCGAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAGCGGTCAGAAAACCCGAACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //