Array 1 486-338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIBY010000108.1 Escherichia fergusonii strain EF20JDJ4048 4-48_FDSW210028505-1r_1_(paired)_contig_108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 485 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 425 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 365 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGGGAGGTGGTCCAGACCTTTTTTTGATGATGATAGTAAGTTGTTGATAATTAATACTGCGGGAAGGTAAGGATAAAAAAGGGTTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAATATCCTCCGGCATA # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 395-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIBY010000146.1 Escherichia fergusonii strain EF20JDJ4048 4-48_FDSW210028505-1r_1_(paired)_contig_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 394 29 100.0 34 ............................. CGCGCTCGCGATCGGCTGCTCCCCTTCGGCTCGC 331 29 79.3 32 ...........T..T....T.T..TC... CTGTTGCGCTGACGTTTTCTTATTCGATTATT 270 29 96.6 34 ........................C.... CAATTTGAACAGTATCGGTCATTTATGTCCTTCC 207 29 89.7 35 .........T.........C...C..... TGTCTGTCTGCCTTGTGATTCTTCTCTTCCCTTGC 143 29 93.1 34 T...........................T CGCTTCTGTTTCCAAATAGTATCATATCTCTATG 80 29 96.6 32 ............................A GCAGCGATTACCTGTCCATCTCTTATCTGTAA 19 19 65.5 0 ...................---------- | ========== ====== ====== ====== ============================= =================================== ================== 7 29 88.7 34 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCACCGGACCG # Right flank : G # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12844-11168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIBY010000013.1 Escherichia fergusonii strain EF20JDJ4048 4-48_FDSW210028505-1r_1_(paired)_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12843 29 100.0 32 ............................. AACTGAAGGGCCGTCGCTACCCAGTTAACACC 12782 29 100.0 32 ............................. CTGGGTTTTAGTTTCGACGTTGTAGCGGATTG 12721 29 100.0 32 ............................. ACATTAGCTCGCCATCAAATATCCATGTGCAG 12660 29 100.0 32 ............................. GGGTTGATGGAGTCGCAATTGATGACGCTCAT 12599 29 96.6 32 ..A.......................... GGTAGCGACTATCAATCGATCCGTATTTTGCG 12538 29 100.0 32 ............................. CAGGGATATAACCTGCTGGATGTAGAACTATA 12477 29 100.0 32 ............................. TCGCGGGTCGTAAATTTCCTTCCCCCACACCT 12416 29 100.0 32 ............................. CGGGTGGAGGTGAAACGTCGCTCCACCCGTTC 12355 29 100.0 32 ............................. CGTGACGCGTACACGTTTTTGAGTCAGTGCCA 12294 29 100.0 32 ............................. CCCTTATCACGTCGCCACACCACCGCCCGGAC 12233 29 100.0 32 ............................. GGCAATGTAACTCTCTTTCAGTTCAGAGGGGT 12172 29 100.0 32 ............................. ACGAGGAAATTATCCAGTCCGTCATGGAGTTG 12111 29 100.0 32 ............................. TTATGCGCAGTTCCGTGGCTGCGGACGTGGTT 12050 29 100.0 32 ............................. GGCGAAATGTGAAGTTTTTCAGTGCCGCTTCC 11989 29 100.0 32 ............................. CATTTTGTCGTATTGCTCCTGGATTTCAGGAA 11928 29 100.0 32 ............................. AACAGGAACAGGCGGCGGCAGACAAAGCCGCT 11867 29 100.0 32 ............................. CAGCCAATCCAGAACTTCGACAGAGAAGACTC 11806 29 100.0 32 ............................. GCTGGTCAGTACATCAATATCGTTAACGTCCA 11745 29 100.0 32 ............................. CGAATTAAAGGTTTTGATCCCCATCGGTATGG 11684 29 100.0 32 ............................. ATCTGTTTTCATTCGATCTTCGCGGGTAATCA 11623 29 100.0 32 ............................. GTGAGGGCCAGCCATTCGCGCTGCACGTCGAT 11562 29 100.0 32 ............................. TGGAGGATGCGGCTATAACGGCAACATCACGA 11501 29 100.0 33 ............................. GGGTTATTGCCGACGGAGGAAAACGCATAGCCG 11439 29 100.0 32 ............................. CGATTAGTCATCGGTGTATTCCTTACGTAAAA 11378 29 100.0 32 ............................. CTTCGCAATAAAACCTGATGTAATAAATGATA 11317 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 11256 29 89.7 32 .T.........AT................ GGCGCACTGGATGCGATGATGGATATCACTTA 11195 28 79.3 0 ..A.........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : AGCTCCCATTTTCAACCCCATCAAGACGCCTTTGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40645-37811 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJIBY010000013.1 Escherichia fergusonii strain EF20JDJ4048 4-48_FDSW210028505-1r_1_(paired)_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40644 29 100.0 32 ............................. GAACCGGCGGAACTTCAATATTAAAACCTATT 40583 29 100.0 32 ............................. TTGAGTGATAACAGACGCTGCCTCAGCAGCAC 40522 29 100.0 32 ............................. CCCGCTCATATTCATTGTTAAATTAACTGAAC 40461 29 100.0 32 ............................. TTTGCGTCATAGACAGTCTGATAATCACGCAG 40400 29 100.0 32 ............................. TTGAGTCTGTGACGGGATGTTTTCTGGCATCT 40339 29 100.0 32 ............................. CGATTTATAAAAAATAGTATCAGATCTATTTG 40278 29 96.6 32 ............................A GCAGCCATTACCGTTCCATCTCTTATCTGTCA 40217 29 100.0 32 ............................. AAATTTACGATCCACGACTTGGCGTTACGCAA 40156 29 100.0 32 ............................. GGGCAGATTATGCTCACCGGATTGGGCGAGCA 40095 29 100.0 32 ............................. TGATGGCGAAATTACCCGCGCTGTAGAGCAAA 40034 29 100.0 32 ............................. GCTTGTGTGGGGGAGTGTTCGCTCGTTAAATC 39973 29 100.0 32 ............................. CGCAGCTCGTATTTACCGTGCCAGTTGCGAAC 39912 29 100.0 32 ............................. GCTGGCAGTGGGGCGGTCTTAAATGCCCCTAC 39851 29 100.0 32 ............................. GGAAACTTCAATCATAAAGGTAATTTTGTTAT 39790 29 100.0 32 ............................. ACGTAGAAACAAAGGTTTGATCAACTTCTGCG 39729 29 100.0 32 ............................. ACTCAGGTATTATGTCATCAGGCTCCGAACCC 39668 29 100.0 32 ............................. TTACTGCTGATAAACGCGTTATTGAGGCGACA 39607 29 100.0 32 ............................. GCAATACTCTCTATTTTACGGTGGTTTATAGA 39546 29 100.0 32 ............................. AGCCGAGTTTAAACAGCAGCAGTTACAGGCGG 39485 29 100.0 32 ............................. CCTATTGCAGCTATTGGGGATACGCCGCCGCT 39424 29 100.0 32 ............................. TGACCGAGTGCAGTTGCTAAAACCAGAGCGGC 39363 29 100.0 32 ............................. AGGTGCATTTAAAACAAAAAATACACCGTGAA 39302 29 100.0 32 ............................. ATCCAGGCCGAGAAAGACGGCGAGTAATGCAA 39241 29 100.0 32 ............................. CACGAAATCAATCAGTGCGGCAGTGGCAGGAA 39180 29 100.0 32 ............................. GGAGTTGATCGGGGAGAATACCGTTACCGGCG 39119 29 100.0 32 ............................. TTTGAATGTCTTTGCCCCCCTGGATGATATTT 39058 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCGCGCGC 38997 29 96.6 32 ..........................T.. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 38936 29 96.6 32 ............................A TAAATCATTCTCTTTTTTCATTACCTGCGACC 38875 29 100.0 32 ............................. GAATGCTCTCTGATGCGATTGATATAGCTGTC 38814 29 100.0 32 ............................. CATGGGGATATTCGGCCTCAATGCGGGATTGT 38753 29 100.0 32 ............................. TGCCGCTTTTATACGTCCGATTTTCCCGGCGT 38692 29 100.0 32 ............................. CGTTATTGCGCCTGGCTGCGCATGGGAAGCGT 38631 29 100.0 32 ............................. CGATGAACAGTTTTATTTGTTCAACGGATCGC 38570 29 100.0 32 ............................. CGTGCTGGTGATCGGCAGTTCCAGCGGCTCGC 38509 29 100.0 32 ............................. CAGTAGCGCTGACGGTATATTATGCGAGTATT 38448 29 100.0 32 ............................. CATTAACAACGAATCAGCAATGAAGTACATCC 38387 29 100.0 32 ............................. ACGAACTGATCCGCATAATAGGCTTTATCAGC 38326 29 100.0 32 ............................. TTCGCCACGTCAGGCGTGATTTCCTGCACTGA 38265 29 100.0 32 ............................. GTTCAGCATCAAGTGATGCCAGTGCAATTTCA 38204 29 100.0 32 ............................. ATGCGGCAGACATTTTTACCTGGGGCAATCCT 38143 29 100.0 32 ............................. TAATGGTACCCATAGACCTGGGAGGGCGAAAT 38082 29 100.0 32 ............................. GAAAAACTTGTGGAGTACGGCGGGCGCGATAG 38021 29 100.0 32 ............................. ATATGACAGCACTGAACACTTCGTCCCAAAAT 37960 29 100.0 32 ............................. GCTCTGTCACCATTTCACTGACTGTCTCCATG 37899 29 100.0 32 ............................. ATCTCTTCGATTAACTCTTTGGTTTGCTGCAA 37838 28 89.7 0 ............T............-..A | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGCATTCCACTCATTTATATTGTTTATCACCTCTGAAACTCATCCATTTTGCCCATCCTGGATTAACCATTATCATTTTCTACAAATTCTCTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : TTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCTTCATTCCCCAGCTCACCATGCATCACTTCATACGATTTTTTCAGGATCACATCAGTGTGTTTGGTTAGGTCTTTGAAAATGCCTTTATTCATCGCGTCGTAGCGTTTGGCATTGCTCTCAATCGGCATAAAGATATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCCGGGTATAGCCCCAGACCTACCGCTGTATTAATCGCGGCCCCCAGACTTGCGCAACCATTAATGGCGTTACGGCGTGCCGGAAGGTTGAACACGTCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCACCGCCAGTAATGATCACATGTTTCGCAAAGTGATTCATTTCATGACACATATTGTCGTAATTGTTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCATGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //