Array 1 96968-96511 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDR01000045.1 Escherichia coli strain NS-P011 sequence045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 96967 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 96906 29 100.0 32 ............................. ATATTCAGTCTAATGAAGCGCCATAATATTGC 96845 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 96784 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 96722 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 96661 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 96600 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 96539 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGTGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAAAAATGAGCTACGAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGACAAAACGCGATCAATACAGTTTTGTTTTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGATGAAATTGAACTTCCAGGCGACCGACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGATAACTCGCGCTCATCCATTTTGAATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113780-112469 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGDR01000045.1 Escherichia coli strain NS-P011 sequence045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113779 29 100.0 33 ............................. GATTACGATTGCGTTAATTTGAAAAAACGCGAC 113717 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 113656 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 113595 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 113534 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 113473 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 113412 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 113351 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 113290 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 113229 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 113168 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 113107 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 113046 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 112985 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 112924 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 112863 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 112802 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 112741 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 112680 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 112619 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 112558 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 112497 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //