Array 1 314814-312895 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBXF01000002.1 Herbidospora daliensis strain NBRC 106372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 314813 27 96.4 33 ....-....................... TGCGAGAGAGACTCAGCTAACGGGCAGTGTTAA 314753 28 100.0 33 ............................ CAGCGTGTGACGTCGGGTGTACCGGCTCAGGTC 314692 28 100.0 33 ............................ GCCGTTGAGTTGACTGGGATGCATCCTGAGAGG 314631 28 100.0 33 ............................ GGGGCATGGGTGACCCTCGCCGGTATGTGGATT 314570 28 100.0 33 ............................ TACGTGTGGCTCAAGCACACGCCCCGGACTCTG 314509 28 100.0 33 ............................ TACGTGTGGCTCAAGCACACGCCCCGGACTCTG 314448 28 96.4 33 ..............T............. GGCGCCGGCCATCTGGAACAGCTCGTAGGCGAC 314387 28 96.4 33 ..........T................. CTCGGCGTCTTCGACCTGCCGGCCGAATGGCCC 314326 28 100.0 33 ............................ GAGTCGGTGGACCAGGCCACCGGTCGTGAAAAG 314265 28 96.4 33 ..............T............. GCGCAGGGTTGATGGCGAGCGACATGAGGGACC 314204 28 96.4 33 ........T................... CGCGGTGCGGGCCTGCTCGTCGTCGAGGTCCTC 314143 28 92.9 33 C.........T................. TGCTGGTAGTGCTGGGCACGGCCATTGTGTCGG 314082 28 96.4 33 .................T.......... TAGACGAGAGACCGAACGGGGGAGATGATCCCC 314021 28 96.4 33 ..............T............. CCCGAGCCCGAGGCGGCGGAGGACGACGGCGCC 313960 28 100.0 33 ............................ GTAGTACGCGAGGTTGCCCGCGATGGTCGTTTT 313899 28 100.0 33 ............................ CATCGCCATCATCGGCGCCGCGAGCTAAGGGGG 313838 28 100.0 33 ............................ GGGGTGGCGAGATCTGGGATATGCCCTGACCGC 313777 28 96.4 33 ........T................... CAAGATCGGCATCGGGACGCTCGTCGTCTACCC 313716 28 100.0 33 ............................ GGGTCGATCTCCAACGCGACGTCGAGCACGTAC 313655 28 100.0 33 ............................ GGTGCGGCTGGATTCGCCGCGCCGAGAGGTCAC 313594 28 100.0 33 ............................ GCTCCACGGCGTGGCCATGACGCAGGTCGAGGC 313533 28 96.4 33 .................A.......... CATGCCGGGCAGGCCGCGCCGGATCACCCAGTT 313472 28 96.4 33 .......................T.... CTCCAGCAACGTGAAGACGGTGTCGATGTCGGC 313411 28 100.0 33 ............................ GCCAGGCACCGGCAAGACCACCTCCGCCGTCTG 313350 28 96.4 33 ..........T................. GCGCCGGCCGATCCGGACCCGGCTGGTGTCCTG 313289 28 100.0 33 ............................ GGGATTCACCGCACCGTGCTGACCGGTCGTGAC 313228 28 85.7 33 .....T........T.........A..T GCTGTACGCGTGGGAGTGGCTCACCTCGAAAGC 313167 28 89.3 33 ........T........A......A... GGCGGGGTCGGTGCAGGTGATGGTGGCGAGCAG 313106 28 78.6 33 ....A.T....G.....A..A...A... TCGCTTCTGGCGGACGGGAGGGCTCACACGCGT 313045 28 96.4 33 ..............T............. CTGCGCGTCCATGGCGGTGAACTCTTGCCTGAT 312984 28 89.3 33 .............TT..A.......... GATGGGCTGCATATACGCCGAATGACGCGAGCC 312923 28 82.1 0 ..T..T....T..TT............. | G [312897] ========== ====== ====== ====== ============================ ================================= ================== 32 28 96.1 33 GTCGGCCCCGCACCCGCGGGGATCGTCC # Left flank : GCCAGCTCGTCGGAGCGCCTGTGCGCCTTCGTCGTCGACTCGCTGGAACGCCGGTGTCGCCTTCCCGCAGTCGTGCACTCCGCACAGCCAGGCGAAGAACAGACGGCCACGGCCTGCCGAGATCTCTTCGAGCAACTGCTTGGTGGACGGAGCCAGATACTGATCCCAGATCTGTTCGGCAACGGCTGCGGTGTCCAGGAGGTGGGACAGAACGAGATTCGTCCTACCGCCTGCTTTTTTGCGAGACTTTCCCCACAAAGCTCCGATATGTCTAATTATCGATGGCTCGTAGTTCAGTGATCGAATCGTGTCGCCCGGCATCTTCATCTCCTTTGGGGAGGAGAGTAGAGAAGACCACCGACAAAACTCGTATGGTCATGTTGTGTGATTTAAGCCGAACGGGATTCGGCTTTGTCGTGGTGGTTGCATGGCCGAGAGCGAGTGGAGAGCAAGTGAAGTTTTTCTGCGGGTCGGTTCGGTAACGTTGCAGGTGAGCAAGT # Right flank : CGAGCTAGAAATAAGAGAGGATGAGCGTTAGTCGGATGACCCAGCTGCAAGTGCCGCAACACGTCGCCGCAGTGGACAGCGGATATCTCGGCACCCGTTGAGCCGGGGCTGAGGAACGAAGCCCTGGATCGTCGATCGCCCCCGACCATCAACCAATCGCCAACCACCATCAGGCGATCGTGAGGGCGAACCTGGTACGGCGGTGCGCCGCAGGACGTCGGCGAGATCGTTCGGCAACGACGGCCCGCCGGGTCGGTAAACGGCCCGGGCCGCAGTCGGCCGGGACCGGCCCCCAGGCCGCAGCCCGGACGGCGGGCGGCAGAGGGCCAGTTACGGCGGCGCGGCGCGCCGCCGTCTTGATCCCTCACAAGAACAATTCGGCAATGTAAGCGTCCAGCCGTTAGGCCAGTGGCCTACTTCTTTCCGTGTACGTCGGCGATCTATGGCTGTAGCGTCGCGCTGTGGCTACCAACGAGGAGCAGACGCGCTGGATCGTCCAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATCGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 324407-327415 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBXF01000002.1 Herbidospora daliensis strain NBRC 106372, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================= ================== 324407 28 78.6 73 ..G....GT...A.........G....G TTGGTACCCGGTCGACTTTGACGGACTGATTCTTTCTGCACGTCTTCGTCGATAAACGACCTGGTCAGCAAGT G,A [324418,324433] 324510 28 100.0 33 ............................ GGAGCAGATCACCGGGTTCGAGGGTGCGGTCAA 324571 28 100.0 33 ............................ TAGGCCAACAGATATGGTGGCCTCATCGTGAGT 324632 28 100.0 33 ............................ CGACGGTGCAGCTCCAGCAGCTCGTCCGGGCCG 324693 28 100.0 33 ............................ CCGACGTCACCGAGGAACTCTCTGCCCGTATGC 324754 28 100.0 33 ............................ CGATAGTGAGCCTTACGCCTAAGGTTGGGATGC 324815 28 100.0 33 ............................ GCACGACGGCCCCGTCTGAGCGATCGAAGCGCC 324876 28 100.0 33 ............................ CCAGTACGCCGCCAGGGAAGCCCTCAAGGTCGC 324937 28 100.0 33 ............................ CGCCGAACTCAAGGACGCGGTCGAGGAGTGGAA 324998 28 100.0 33 ............................ CTGGAGGTCTGCGAGGTCTACGGCATCCCCCAC 325059 28 100.0 33 ............................ CTGCTGCCGGGGGACGCTCTCGTTCTCCAGCCC 325120 28 100.0 33 ............................ CCCTATCCAGCCTTTCCAGGACCTCCGTCCTGG 325181 28 100.0 33 ............................ TGTCGTTCACTCCTCGGGGATAGCCTCCGCTGC 325242 28 100.0 33 ............................ GGTGCAGCCGATGGAGTCGAGGGCGTTGGCTAC 325303 28 100.0 33 ............................ GGCAGCCCAGATGGCGGGAGATCCGGTCCAGGT 325364 28 100.0 33 ............................ CTAGTTGGTGAGCCGCGCGACCCCGTCGGAATT 325425 28 96.4 33 .................A.......... CTGCGCGCCCGGGATGCTCAAGCGGGTGGTGAG 325486 28 100.0 33 ............................ CAGGATGACCACGGCCAGGCAGTAGAGGCGTGG 325547 28 100.0 33 ............................ CAGGTAGGGCGTGACGTCCTCCCAGATGGCAGG 325608 28 100.0 33 ............................ CACGATCGCGCCCGGCCGGCAGTGCTTGCGGAT 325669 28 100.0 33 ............................ GGCCGGTGGCACCGTCGAGCAGTGGCGAGACGC 325730 28 100.0 33 ............................ CCGGTCTGGTCCGATGCCGCCCCACTGGTACGG 325791 28 96.4 33 ...........C................ CCTACGACATGCGCAGCATCAGGCAGACGGGAT 325852 28 100.0 33 ............................ TCTCGCCAAAGCGGGCCGTTTCGACCCGTCCAC 325913 28 100.0 33 ............................ GAGTTCCGGCTCGGTCGCGGTCGCGGTCATCGC 325974 28 96.4 41 ......................G..... GGCACGGTGCCGGTGACGTCGATGCCGAGGGCGGTCAGCGC 326043 28 100.0 33 ............................ GAGCCGCGAGCTCGTGCCGCACGAAGAGGGCAC 326104 28 100.0 33 ............................ TCTGGAGCACGACGTCGATCACCTCGACGTCCA 326165 28 96.4 33 ............T............... CAGGTGGCGGCCAAGCGGGCGTCGCTCCGTGGC 326226 28 100.0 33 ............................ CGTGATGAGTCGGACGCTGGCATTCGCGGTGCC 326287 28 100.0 33 ............................ GGCGGCGATTGACGGCTTGGTCGACGCTGGGCT 326348 28 100.0 33 ............................ TGCATCGGATGCCCATTATCGGGGTTGGGCGTC 326409 28 100.0 33 ............................ GGAGGTTTTGCCGCCGTAGTCCTTCCCCGAGTA 326470 28 96.4 33 ....A....................... GTTGTGCAGGGCGGCGGTCGCCCTGGGCGCCCC 326531 28 100.0 33 ............................ GCTGGGCAAGGCCAAGGGCTCCGTCAACGCCAC 326592 28 100.0 33 ............................ TCCCTGCGGCGAATGCCGGAACGGTGAGGGCCG 326653 28 100.0 33 ............................ GCGCTCGACGAGCTGGTCGCGCGAGAGCTTGTC 326714 28 96.4 33 ................T........... GATCATTCGTTACAGGCAGAAGCATGGTCTCAA 326775 28 100.0 33 ............................ CTTGAGTGGCAGGTCGTGCGGGATGACGACCTC 326836 28 96.4 33 ....A....................... CGTCGTCATGCCGCCGGCCCAGCCCGCTTCCGC CG [326844] 326899 28 100.0 33 ............................ TGTGGACTCGTTGCTGATCGCGTCTTCGTGGCA 326960 28 96.4 33 ...........................T CGGTCCGTACATTCTGCGTTAGTGACTACCCGC 327021 28 100.0 33 ............................ CGCCGGGATGATGAACGCGCTGGTCCCCGCCAT 327082 28 96.4 33 .C.......................... CCTGCTCACCTCGCTCCACAACGCGGGCCTCAT 327143 28 96.4 33 ......................G..... GTCTGGATGACGCTCGCCGAGCTGGCCAGGCAC 327204 28 92.9 34 ....A......A................ GTTTCGCCCCCGAGGTCGCCGAGACCATCGTGTC 327266 28 89.3 33 ....A...........A......C.... CGCGGCCGGGACCACACTGGTCGACCTGACAAC 327327 28 75.0 33 .C.......C..AG..T......C...T CGACGGCGTCAGGGTCCAGACCTGCCCGGCGCA 327388 28 82.1 0 A..............AT..A.......A | ========== ====== ====== ====== ============================ ========================================================================= ================== 49 28 97.6 34 GTCGGCCCCGCGCCTGCGGGGATGGTCC # Left flank : ACGCGACCGGATCGCCGAAGACAAGCTGCTCGGCCGGATCGTCCGGGACATCAAGGCGCTGCTCTCTCCTGACGGGTCGGAGATCCCAGAGATCGACGTCAACGAACTATGGGACGAGAAACTGGGAGCCGTCCCCGGAGGGGTCAACTGGGCTAACGGATCAGGAAGCGTGCGTGGAAGCGGCCTTGTCGAGGCGGAGATGGGCGATGAGCACATCGCGATCATCGGCCCTGAACTGGAAGGACAAGCAGCGGAGCAGATCCATGATCCATTCGACGATGCCACCCTTGGCGAGGGGAGTGGTCTATGACCGTCGTGGTCCTCATCGCAGCACCCGAAGGCCTGCGCGGACACCTCACCCGGTGGATGGTGGAAGTCAATGCGGGCGTGTTCGTCGGCAATCCCAGTAAGCGTGTCCGGGACCGTATCTGGAACCTGCTGGCTGAGCGGATCGGGGATGGGCAAGCCGTCCTCGTGGAGCCCGCAGCTAACGAGCAGGG # Right flank : ATCAGTCAGGGGCACGATATGTCCAGCCACGGAGCGTCGACTCTGCTCAGAACGTAGGCGAACGGTTCAAGTCCCCCCTCGGACACAACTGTTACCCCATGAAGTCCTGGTCAGCCGAAAGGCGACCAGGACTTTTGTTTTTCCCGCTGTCTCCGCGCTACTGGCGACGCCTGAGCCGGACTCTAAGTATCCATGTCTCGCGCAGGGCGCCCACTAACCGTGGTGAACGTGCCCTCAGACGGCTGGACGTCGTTCACCCGTTGATCGGTTTCTGGCAGCGGGTCGGCGCTCTCGATTGCAGCGCGGTTGAGGTCGTCGGGCTTCGGCACGAAGAACGCCCTCCGCCACCCCGGGACAGCAGTCCCCAACAGAGCGACGGCCCCTACGAACCCCAGAAGAAGTTCGACGGCGAACTCCTCTCCCCCACAGGAGATCAGCAGCCCACCCACCAGGGGCCCCACAGCGATCCCGCCATAGCCCAGGAGACGAGAAACGCTCAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //