Array 1 9452-10335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTH01000010.1 Haladaptatus cibarius D43 HAPD43_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9452 30 100.0 37 .............................. CATCGGCGTCCGTGAGCGTGATGTCCGTCTCGTGGAA 9519 30 100.0 35 .............................. CCCAACTACCGGAGTGGTAGTTTTCTAGCGAAACG 9584 30 100.0 36 .............................. TGGTTCATTGCGCTGATGGCGATGGTCGGTGGATGC 9650 30 100.0 36 .............................. AGCATACCCGAGTCACTGAAACATCGCTTGGACGTG 9716 30 100.0 35 .............................. CGGCGCTGGCGTCGGACAGCCCCCGCTCTGGGCGT 9781 30 100.0 34 .............................. CTCCCGACGAGCAGTTCGAAAGCGCGCCCGGACT 9845 30 100.0 36 .............................. GTAGATCGGGAGGAAAAGGCGGGCGTGTCGCCTGCG 9911 30 100.0 37 .............................. GATGCCAAGGCTGGCAACGAAGGTGATCAGGATCACG 9978 30 100.0 36 .............................. CACATCAACGGTGCCGAACTCGTCTTTGTCACGCCG 10044 30 100.0 36 .............................. TACCGATAACGTATGCTGTTGGAGTAAGTGTATTCC 10110 30 100.0 35 .............................. TCTGGATTGTCGCGGCGATGTGCCACCTGCTCGGG 10175 30 100.0 35 .............................. TCAGGCTCACTCGTGCTGATGACCCGTCCCCGCTG 10240 30 100.0 36 .............................. TCCGTGAGACCATCAGTCGATGGCCCGGCCGAGGGC 10306 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 99.8 36 GTTACAGACGAACCGTAGTCGGGTTGAAGC # Left flank : GGAAGAGACGGTCGAACATCCACAGCTCAATCGGAAGGTGAGCTACCAGTATCTCCTTCGCTTAGAAGCGTACAAACTCAAGAAGCACTTGCTCACAGGGGAAGAGTACGTGCCGTTCAAACGGTGGTGGTGACATGGTCTACGTCATCGTCGTCTACGATATGCAGGCAGATCGAACACGTCTCATGCTCAATTTCCTTCGGAAGTATCTCACGCATGTCCAGAATTCTGTTTTTGAAGGAGATATTACGGAAGGCGATCTCGAAACTATTCAGAATAAGACGCGTGAGACACTCAAGGCCGACGAATCGGCGATTATCTATCGAATGAGTTCGGAGAAGTACGTTGACCGAACAGTCGTCGGTGAGGATCCCACCGATGATGCACGATTTCTCTAAATTTCCGTCGACCCCCCGGGGGTTTGGGGGTTACTGAGGGTCGACGGAAACACCCAAGTGTGAATGGCTTCAAGAGCGACTGAGTGCCCAGAAACGGGTATG # Right flank : TTGAGTTTTTTGTCCCCATGTTGGATTTGCGACGACTGTCCTAGCTTTCGGCTTGGATGTACCGCTCAGTGGATAGAGGTCGGCGGTGATACCGATGTTGAGATAACAGCTCCTGCGAAGATCATCGTCGAAGCAAAAAGTCGAGGGAGTTCAATTGGTGTTCGGAGTCTTAAAGCAACTCGAATCGAAGGCCACAGAGATAGTCGTAGAGCAGATCACACAATTGTCGTGTGCCCTCACTTCCCACTCAGGGAATTACTCGTTAGTTCATATAGAAAATATAAATAATTAGGATAAGTATTTTTATTTATATTTATGAAAATTACTATTAATATATTATCCATCACAAATTTCCTCAACAACAAGTTCGTAGACCTTTGGGAAGTTTGCCTCAAGGAAATCAATATCATCACTGAGTCGTTTTTTGATGCGGTTTCTGACAGTTGATTCGACTTTGTACCGATAGTTATCAGAAACATCAGCGTTACCTCCGATAATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCGTAGTCGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 113016-111920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTH01000010.1 Haladaptatus cibarius D43 HAPD43_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 113015 30 100.0 36 .............................. GATTCTACCTCGATTTCAATCGAGTTATCACCCATG 112949 30 100.0 36 .............................. CACGAGTCGTTCGGCGAGGAGAACGTGTTTGTGGTT 112883 30 100.0 37 .............................. GCTCTGAAGCTCTGTCGTTAGCGTTTGGATAGTCTGC 112816 30 100.0 38 .............................. GACCATGTAGTAATCGAGTGCCACACCCGTCGACAGTC 112748 30 100.0 38 .............................. ATATGTCGTAGCCTCGCAGGACACTTGCCACGCCCAGC 112680 30 100.0 37 .............................. CTCCGTCGCTTTTTGCCACAGACCGTTCGACAGCGTC 112613 30 100.0 36 .............................. AAGAATCTCGTGAGGCCCGTGAGGAAGGATATAAAG 112547 30 100.0 37 .............................. GATCCTGGGGATTATGGCCGGGCTCGCGCTCTACCGG 112480 30 100.0 36 .............................. GAGATGTTTCGACATGGATGGGACATCCGGAAGCTC 112414 30 100.0 36 .............................. GTGAAGTCCGCGTTCGGTGTCCTCCGTGTCTTGCGC 112348 30 100.0 35 .............................. TTGGAATATACGTCCACATCATTGCCGAGATAAAG 112283 30 100.0 37 .............................. CACCTGCTCGGCCAGAACCGCGTCCATGTCGGCGTGC 112216 30 100.0 36 .............................. TAGAACACGTCTACCCGAACCACGAGGCAGGATACA 112150 30 100.0 37 .............................. GTCCTGTACGAACGCGGGCAAGACAGTACCGACCCAG 112083 30 100.0 38 .............................. TGCTGAATCCGATCTGCTTGCTCGTCCGGCAGGTACAT 112015 30 100.0 36 .............................. ACCCTTGCGAGGAAACTATGACAACCACAAATATCG 111949 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 37 GTTACAGCAGAACCGTACTAGGGTTGAAGC # Left flank : TTCGTTTCATAGATTTTTCTGTAGGTCACAGGCCAAACCTCTAAGACGATGGAAGCAGTAGCTATCCCTGCAGCTACTTAACCACCTTCCGAGGTGGTTATAACCGTACACGTTGTCTTTTGGTGAAGCGAACGTGTACGGGATTTTTGTGACCTATCAGTGTCAATAATCGGTGGGAACATAACTTTTTGATCTACTAGTGGTAGAATGTGGGTCGTTTGCTACAGGTAGAAAAATCCCATTCCGACACTGGCTCGTGGATACCCATACCGTTCAAAGGAGAGAATACGATCTAAAGCGATGAACCGTTCGATCTGACACATCCGGACATGGGCAAGGAAGAGTAACTATTGGATTTTGTAAATTGCTTCGACGTGAGTTGGCTAATTTCCTTGTGCGTTTCCGTCGACCCCCGGGGGGTTTCGGGGTTACTGGCGGTCGACGGAAACACCCAAGTGTGCACGGTACGAAGAGAGGCTGAGTGCCACGAATTGGGCATG # Right flank : AACAAGCAGAACGACGGTGAAGCACAGGGTAGAAGTGGTTACATAAGAGGTCACGTCACGACCAAACACCCCAGTTGGCGGTGACGACGAATACTCTAATTTCCGCGTTGACAACCACCTGGCGAACGTTATCGGGGAAAACAAGAGTGTCCAGAAAGACATGGTACAAATAATCCGCAGCGTTCTCCTACAGCACCTCAAGCTGTCGATGTGCAGACAGCCATTCTATCCCAAGTATATTAGCAACTCTGCAGGTAGTCGCCACTAGAGATTCTGATTTGCGTACTCCGCTAAAGTACCCGGTTACCGAATCCCGCAGACATAAAAACAATCTTAACTGCGTGAGATGGCAACCACTGGTGGTCAGATCAATCAACTATTATTGACACTCACTCCCATCGAAGAGTTCGGCATTGTGAGCGTGTTGATATCGTGTTGCGACGTCATCCCAATTGACTACCTGCCAGAACGCATCGATGTAGCTCCCCCGATCGTTCTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACCGTACTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 39452-37660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTH01000008.1 Haladaptatus cibarius D43 HAPD43_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 39451 37 100.0 35 ..................................... GTGTTCGGATGATTCGGAACCCGGTGGAACAACTG 39379 37 100.0 38 ..................................... ATGACGGTGGTGCGTCTGCATGACGCGAGAACACGCAG 39304 37 100.0 37 ..................................... AGGTCGTCGCCGGTCGGGTCGTAGCCGGTGTTGGTCT 39230 37 100.0 37 ..................................... AATGTCTCAACCGGCACGGTCGGCGACGATGCACCAA 39156 37 100.0 36 ..................................... ATTTCCCTCCGACCTCACCTCCCACCGGCAACCGCT 39083 37 100.0 33 ..................................... ACTCGTTCGACGTGCCACCATGCTGTCGCGCGC 39013 37 100.0 37 ..................................... GCGGAGATGGTGGGCTGGATATTGGAGAGTGGCTTAA 38939 37 100.0 37 ..................................... TCTTTAGTGACCGTGACCACTGGGAGCGTAAATGGCT 38865 37 100.0 38 ..................................... CGAACGGGAAGAGGACTGCGTTGAGTCCTTCCAGTCGC 38790 37 100.0 38 ..................................... AGCTTGGCCGTCAACTGCTGGAAGAGCAGTACCAGAAC 38715 37 100.0 37 ..................................... AGCATTCATGGAAATGCTCACAGCCGTCCTCGCGCTT 38641 37 100.0 37 ..................................... GGGTCACCCCGACACCATCGCACCCAATGCTGACCGC 38567 37 100.0 37 ..................................... CGATTCGTTCGATTTCTCGCTCGATTTCTGCTTCATA 38493 37 100.0 36 ..................................... ACTGCATTCGCTGTCCGGAGATATGGTCGGCCATCA 38420 37 100.0 33 ..................................... CTACCACTCTATTGGCAAACTACCGGAGTCGTT 38350 37 100.0 37 ..................................... TTCGCGGAAGCCGCTTCGGTCGCCCTCGAGAACGTTG 38276 37 100.0 35 ..................................... TACAAAATCAGGAAGTACGGCGGGTCGCTCATCAT 38204 37 100.0 35 ..................................... TGGGATATACGTGGTAGAATAGCGACTCCCGCCCG 38132 37 100.0 37 ..................................... TTCCTGAAGAACCGTGAAGCCTTGGGTAAAGCGATGG 38058 37 100.0 35 ..................................... ACGACAAGAAGCAAGTGAACGTTGAAATGCCCGCA 37986 37 100.0 36 ..................................... TTACTCATCGTTCCCCTCCGTGACGGGGTTCGCGGC 37913 37 100.0 34 ..................................... CACTCTACGACGTGGTCGTTGCGAACGAAGCGGT 37842 37 100.0 37 ..................................... CAGTCAGGTCTATTGGTCGCCCCACGTCCACGTCATC 37768 37 100.0 35 ..................................... GAATCCAGTAGCGACGATACCCAAACCATGAGCGA 37696 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 25 37 100.0 36 GTCGCAGAAGCTAGAAAAGCCACTACGGCATTGAAAC # Left flank : AGGCGATTCGCCAGCAGGTCATCCTCCTCCGGAAAGCCATCGTCGGTGAATTGGACGACTACCACGCGCTTACATTCACCCGATAACCATGCGCCTCGCAATCGTGTATGACGTCAGTGATGACTCGAACCGCCGCCGCGTCTATCAAACGCTCCAGCGATACGGGGCGTGGCAGCAGTACAGCGTATTCGAACTCGAAATAACGAAGACTCAGCGCGTCGAACTGCAGGACGAGTTGGAATCGCATATCGACCCAGAAGACGGCGACCGGATTCGGATATACCGCCTCTGTGAATCATGTTTGGGGAACATCACCGACCTCGGAGTGACCCCGCCAGACGAACAGTCGAACGTTCTCTGAGCGTGTGACGAGTCGCGGCTAAGGTGAGTTCTTCATCGACCTTTTTAAACTCTCTGTACGGCAGGGGTCGATGAAATTTGGGTCTGGTTTCGGTTGCAGAGAAAGCTTTATTGGGCCTCTCGGTAGAATTTCACCCCCT # Right flank : CCAATCGCAATCGGTACCAGTGTCGCTGATGGCCCGTGTCAACGAAAGCGATTCGGCTACGACTGTCCCCAGTGTGGGATAATGCACGACAGCGTGGAGGACGCGGAGTACTGTTGTCAGCGCCGACCAGAAGACGCACCGGACTGTATCGAGTGTGGTCGTCGTATAGAGCGCGGTGCGTGGGGTACAACCGCAGATGGGACTCGGACGGTCGAATTCGCCGAATGCGAAGCCTGTGACATCGGCTGGGGGTGGTTCGCCGGCTGGCACCAACTTGACCAGGAGCAAGACGATGACTGACGACGCTGGATACGCAGACCCTATTTTTCGATTCGGAACTTCATCGTAAGCTTTGGCTCTTTGCGCCAGTTAGAGTCGTTCATTGTAACAACTAGTCGATACTTGTCTGAGTGCCGGTATGGTTTTTCGTCCTTACCACCGAATTCAAAAGTATCACTCAGTTTTTTACTCCGTGAATCGTAGTATTCGCGCCAAAATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAAGCTAGAAAAGCCACTACGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.20,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 49622-55010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTH01000008.1 Haladaptatus cibarius D43 HAPD43_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 49622 37 100.0 36 ..................................... CGGTCTACACGTCACGTCCCGTCCAACGTGTCACCA 49695 37 100.0 37 ..................................... AAAACAACCCTTACAATCCCTCAAGAGACCGAACAGA 49769 37 100.0 38 ..................................... ACTATTTATAATTGTTGGGAAGTCTTCGACTGCATCTG 49844 37 100.0 34 ..................................... TCGTCGTAGACGACGCTGACGACGTACTCGCCGA 49915 37 100.0 37 ..................................... CCGTCGATGCCGACGCTCCGCTTGCGCAAGTTCGAGC 49989 37 100.0 34 ..................................... TCGTGGGTCAGAAGAGCATCGCACCCCCGACAAC 50060 37 100.0 35 ..................................... TATTGACGAAGACGACGACGGTGCCTGTGACCACC 50132 37 100.0 36 ..................................... TCCGGACCAAGGATGCACCCACATCATTTTGCTCCG 50205 37 100.0 35 ..................................... TCGTCTCTTTGAGTGAAGCGATGTTGCTGGCGACC 50277 37 100.0 37 ..................................... AACTCTGTTTGAACAGTTGTGTTTCCGTCTGAATCAA 50351 37 100.0 42 ..................................... GGATTCCTTCTTGTCACGGATGTTCTCTCGCTTCTCAACGAG 50430 37 100.0 38 ..................................... TCGCGTGTCCTGATTGCATCGAAGAGATTACGGGAACT 50505 37 100.0 35 ..................................... GGAGTGCCCTTGTTCGAGCCATTGATGTTTGCATA 50577 37 100.0 37 ..................................... CGGAACTCGTGCTTGTCGTCTCCGAGTCGTCATTCGT 50651 37 100.0 37 ..................................... GCGTAGGTCGTAATACTCGGTACTGTCGTGAATCAGT 50725 37 100.0 33 ..................................... TCGGCGTCGTCGGAGTCGTCGGAGTCGTCGGAG 50795 37 100.0 36 ..................................... GGGTCACCCCGACACCATCGCACCCAATGCTGACCG 50868 37 100.0 38 ..................................... TCCAACCGTGTCTGAAGGTGCGCAAGAGTCCCCGCGTA 50943 37 100.0 36 ..................................... AATGCACAAAACGGCTCGCTCCGCGTGCTGGAACCG 51016 37 100.0 35 ..................................... TATTTTGTCGCCTGCTCCACCCTCCTCGAATCGGT 51088 37 100.0 37 ..................................... AACGGTTATTCCGCTCATCTTTTCCCTCTGTGTTTTT 51162 37 100.0 37 ..................................... TTTACACCCATTCTCGGGATTGTTGTACTGCATATCC 51236 37 100.0 37 ..................................... TTTGAAGGTCTTGTCATCACCGAAGCGAAACTCGTTG 51310 37 100.0 37 ..................................... TCGTCATCCACGGCGACACGCTCAAAGTCGAACGGCG 51384 37 100.0 37 ..................................... GACAGACAGGGGCGGGGACAAATCCGTCTTGGTCTGG 51458 37 100.0 33 ..................................... GCTGTGGTTGTCGTGCCGCGTTTGTGCATTTGA 51528 37 100.0 36 ..................................... GGAGCGGAATCACCCTCGATTGTTCAAACAAGGAGG 51601 37 100.0 42 ..................................... AATCTGATGTCGTACTCAGTGACGCTCACTGCGGGTGTCCTC 51680 37 100.0 37 ..................................... TTGGGCCAACTGCCCGAGGAGTCGTTCACGTCGGTCT 51754 37 100.0 37 ..................................... GCGAAGGGGCAGAAGGCGCTCTCGCAAGACCGTCGAA 51828 37 100.0 36 ..................................... GTACACCCCGGTGCGGTCACATCGACCAGCGATGCG 51901 37 100.0 37 ..................................... TCTTCTGGTTCTGTCATGGATTCGTCTGTCTGCGAGG 51975 37 100.0 37 ..................................... AGTTCGGGCGTGACAGGCGTCCCGTCCTCCGTTTCGA 52049 37 100.0 37 ..................................... AGTTCGGGCGTGACAGGCGTCCCGTCCTCCGTTTCGA 52123 37 100.0 36 ..................................... GGATCTCCTGAACGGTGGAGTACGACCCGCTGGCGG 52196 37 100.0 35 ..................................... GGTCGACGGACACGACGCCGAGCGGCCCGCGCGGG 52268 37 100.0 37 ..................................... GCTGTGCGTCCTGTGGCGGCACGGTCGAAACTGGTTT 52342 37 100.0 37 ..................................... CGATTTCTGCCATTTGAGACCTCTTAGATGATGTTGA 52416 37 100.0 38 ..................................... TGCTGGCCGTCGGTGACGGTCGCGGTCGCGGTCGGCGC 52491 37 100.0 38 ..................................... CGGTCTGCATCGTTCGCGGGACGAAGCGCGTGGGGTCG 52566 37 100.0 35 ..................................... GAGAACGCGGCGGGGTATGGCACGTCGTTGACTGA 52638 37 100.0 35 ..................................... TGACATCCAGCGGGTTACACGCCCGTTGTACGAAA 52710 37 100.0 36 ..................................... AGGATGGCGAGGAGTCCGGTTTCAGCAGGGGAGACA 52783 37 100.0 36 ..................................... TCTGTCATTCGCCATCACCCGACAGTTTCGCCATCG 52856 37 100.0 38 ..................................... AGTGTGCTACATCGAAGGCATTCCCACGCTATCTCCTC 52931 37 100.0 38 ..................................... TCGTCATGACTCAGTTGTGGGGTTGTGTTGACTGTCGA 53006 37 100.0 35 ..................................... CTGGAACGACACCGCCGCGTCCAGCATCACCCGCA 53078 37 100.0 35 ..................................... AGGAGTGCGCCGGTCTTCTCGTCCATTCCTCGTTC 53150 37 100.0 37 ..................................... TGATTCACCCGTGAGTCCATTATTAAATATTCCTGAC 53224 37 100.0 36 ..................................... TGCATGGCGCGCGCACTCGTCTCAACGGCCTTGCGG 53297 37 100.0 37 ..................................... ATGTGACCGGAAAAGTCGCGCTTCCCTACGGGGTCTT 53371 37 100.0 34 ..................................... CGCTATCAACCGGATTCGAGACGCAAACGACCAG 53442 37 100.0 37 ..................................... TTGCGTCCGGCAAGGGGGTGTCCTCGCGGTACTCCAT 53516 37 100.0 37 ..................................... TGAGGCAGACGACTACAACCTTCGAGTCCCCGGATTG 53590 37 100.0 34 ..................................... AGCAGTTCGCTGTCGCGTCGGACGCCTCCCCACG 53661 37 100.0 37 ..................................... TCTTCTGGTTCTGTCATGGATTCGTCTGTCTGCGAGG 53735 37 100.0 37 ..................................... TCTTCTGGTTCTGTCATGGATTCGTCTGTCTGCGAGG 53809 37 100.0 34 ..................................... TGGCAGAGTTCGAACTTACGTTCGAGGTCACCTA 53880 37 100.0 32 ..................................... CGGACTGGCCTCCCTGCTCCCCCGACGTGCCT 53949 37 100.0 40 ..................................... CATTTGTAAACGGTCATTGTTCTATTTCCAAATGTTCAGG 54026 37 100.0 35 ..................................... TCATCGCCTGCGTCGGTCGCACTCGCCGTCGCCTG 54098 37 100.0 34 ..................................... ATGTGTCGGACTTGCAACATCGTCACGGAGTTCG 54169 37 100.0 38 ..................................... CGGATAAACACGATTCCGCTGTCTGTTCGCCCAGACGA 54244 37 100.0 35 ..................................... TGATTAAAGGAATGCGTGATATTGGTGAAATGCCA 54316 37 100.0 38 ..................................... AGGTCTTCGACTACCGAACGGAGGTTGTTGTCTCTCGC 54391 37 100.0 37 ..................................... GCGTTGGTCATCGTCGGATTGCTAGTTGTTATCGACG 54465 37 100.0 35 ..................................... CGGGAGGTATCGCCGGTTGGTGTCAGGGTGGCGGA 54537 37 100.0 35 ..................................... GACTCTGCGAAACTCAGAGCGTTTGGCGCGGTCGT 54609 37 100.0 36 ..................................... ACCGCGACATGAAGTTCGGGCGTCACGAGGGCAAGA 54682 37 100.0 38 ..................................... AGGTCTTCGACTACCGAACGGAGGTTGTTGTCTCTCGC 54757 37 94.6 37 ......................A.C............ GAAGAAGCGAAAGAAATCTCGAAATCGGCAAGCGCAA 54831 36 83.8 35 ...A....C........G....-..AA.......... AGTTCCAACTCGCCGTTCTCAACGCCGCGAATCGG 54902 37 89.2 35 ..TA.G.................C............. CGGATCAAGAAGGCGCTCGACGAGACGCTAATGAA 54974 37 83.8 0 ..TATG.................G....C........ | ========== ====== ====== ====== ===================================== ========================================== ================== 74 37 99.3 36 GTCGCAGAAGCTAGAAAACCCAGAACGGGATTGAAAC # Left flank : GGTGACCTCGTTGTAGCGCTTACAGGAGGGGCCCGCGAAATCCTCATCCCATTCGCACTCGCGTCGTTCATCCACGCTCCACGGATTCACCAGACGTTGACCTTCAGCGATGTTGATCAGCGTGTCCGCGAGTGGTCACTCCCGGTGTTGCAGGCACATGTGCCACGAAAGGCACACCAAACGCTGGCAGTGATTGCCGAGGCAGACGCCCCGCTTTCGATGTCCGACCTCACCGAGCAGATCGAGCAGTCGAAAAGTACGGCAACTCGCCACGTCGAGACCTTGGCGGAAAACGAGGTGGTCACCACATTTAGAGACGGGAAAACGAAGTATGCCGAAATAACATTCACAGGGGAGTTGTTGCTTCGCGCGGGCGCGTGAGAGCCGGGGTCTTCATCGACCTTTTTAAAGGCTCTGGACAGCGGGGGTCCATGAATTCCGCCCGTAAAATGCGACTGTGAGAAAGCTTTATTGGGGCTCTCGCCGAAATTTCACCCCCT # Right flank : CCATTGTGATGACCCGGTACCGTGGAGTTCCGGTTCAGTAGATGGTGCAACTCGAATACTGGGCCGCAGGCGAGTGGCGGGCCGTCGCGCGCTTCGACCACGACGGGGCGGGGCGGGCTACCGGACTGCAGTTCGGAGCGGCCTGCACATGGACATTCACCGACCCGATGGGACGCAGGTGGGGAAGCGCCGTGATTTTCCCGAGATTTCGCGTGCCGAAGGGCCGCGCTTTGCGGAAGAGTATTTACGACGCCACCACGAAAGATTAATCAGGAGGTTCGAAACGTGGCTGTAGAAGACCACCCCAACAGTGTACGCGAGTTCATGGAACGCGAATCGGACGAGTACGAGCCAGCCAGTGACGACCAACTGGACGACTGGCTTGCCGAGGCTCCTGACCCTGACGAGATTTTCGACGCCATCGAAGCCGACTACGGCTGTCCACCCGACAGTGCCCGTGACGAGTCACAGAGCGGCTACGACCCAACAGAGCACTAGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAAGCTAGAAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //