Array 1 2199046-2198741 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJQUA010000001.1 Brachymonas denitrificans isolate Isolate6, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ================================ ===================================== ==================
2199045 32 100.0 35 ................................ ATGCTGCGCCAGTCCGTTACTTGTAGGGGCATAGA
2198978 32 100.0 37 ................................ TCGGCCACTACCCGCCGATGGCAATGGTGCGTGACCG
2198909 32 100.0 35 ................................ AGCAGCACATCCTGGCCGCCGGTGGCGTGGCGTCC
2198842 32 100.0 37 ................................ TCGAAGTTGCGCATGTGGCTCACGGTAGGCCAGGCCG
2198773 32 75.0 0 .........TA.......T.A..C.....TCA | T [2198743]
========== ====== ====== ====== ================================ ===================================== ==================
5 32 95.0 36 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC
# Left flank : ACGGCAAATCGTTCGACAGCAGCAGACAAGGCCCATCCTGGATGCCCTGCACGAGTGGATGACACTGCAACGGCGACAGGTGCCCGACGGATCGGCAACCGCCAAGGCGCTGGACTACAGCCTGCGAAGATGGGATGCGCTGACCCGATTCGTGGGTGACGGACAACTGCCCGTGGACAACAACTGGATCGAGAACCAGATCCGGCCCATTGCCGTCGGTCGCAACAACTGGCTGTTTGCCGGTAGTTTGCGCGCGGGCCAGCGGGCCGCCGCCGTCATGAGCCTGATCCAGTCGGCGCGCATGAACGGGCACGACCCGTATGCCTACCTCAAGGAAGTGCTCACGCGGCTGCACACGCACAAAGCCAGTCGCATCGACGAACTCTTGCCGCACCGCTGGCAACCAGGCGCCATCTAAGTCTCAGCCACGTCCGCCGGTGGCGGTCAACATGGGATCACCGCGCGCTTACGATACGCCGGCTACTCGGATGTCAATCGGT
# Right flank : AAGCGATTTGCCGAATGCCCCTCAGCCTGTTCGCGCACTTTGTATTACCGAACAGGTAGAAAAAAGCAGATGCTGAGCGTAGATTCCATTAGGGTAGGTTTGTCAATCAACTGTTTTGAAGGAGACACCGTGTCCAAAACCCCAACTTCCGCCACCAAGCACCCCCCAACACCGCCCAGGTCGCCAATAACACCAACAAACAAGGCGACAAGCCCCCCACCCAGCTCAATCAGCCCCAGCGCACACCGGAAAGCCGGAATGACCGAGAATCCCTCCTAGGCGGCAACAACCAGTCGCAGTCGCGACGCGGTGCCTACTCCAGCAACCCCTGATCGATTCTCCACCCCATGCCCCAACTCTTCGACACCTACCCCCTAGCAGGCCGCACCCTCCCCAACCGCATCGTCATGGCCCCCATGACCCGCGCCCGCTCCCCCAGCCACGTCCCCGACGAGCTGCTCGCCACCTACTACAGCCAGCGCGCCAGCGCCGGCCTGATC
# Questionable array : NO Score: 8.81
# Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.74,9.41 Confidence: HIGH]
# Array family : I-C [Matched known repeat from this family],
//
Array 2 2205545-2201572 **** Predicted by CRISPRDetect 2.4 ***
>NZ_CAJQUA010000001.1 Brachymonas denitrificans isolate Isolate6, whole genome shotgun sequence Array_Orientation: Reverse
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ================================ ========================================== ==================
2205544 32 100.0 33 ................................ TCCAGCGCTGCTCCAGCTTCGATCGCCATGCTT
2205479 32 100.0 34 ................................ TGCCAGACACTGCAGTGCCTGCAGAGTTGCGCAC
2205413 32 100.0 35 ................................ TGGGCGAACGCCCTGCCCGGCAAGGCCCTGCGCAG
2205346 32 100.0 35 ................................ AGCCAGGACGGCGGCGAGCAGGCCGGCGAAGACCT
2205279 32 100.0 34 ................................ GCATCACATCCGGCATGGACTTTGTGAACCAGAT
2205213 32 100.0 33 ................................ AATCTGACAACCGGGTTTGTATCTGCGCTCGGC
2205148 32 100.0 34 ................................ ATTCGGGCGTGGGAGCGTGCCAAAGCATCGACCA
2205082 32 100.0 36 ................................ CACGTCTGGCCGTTGAAGATGAACAGATCGCCGCCG
2205014 32 100.0 34 ................................ ATGGCCCAGCAGCCACGATCCGTAAACAGAAGGG
2204948 32 100.0 33 ................................ GGATTGGCCAGGGGCGCCATAGATGTTGATGGT
2204883 32 100.0 34 ................................ CTCGTGGTAGCTCTTTTCCTCGTACTCCCCGGTG
2204817 32 100.0 34 ................................ TGAACTGCGGTATGTCGAACACACCGGAGAGGCC
2204751 32 100.0 36 ................................ GGTGCAACCACCGACGAGGCCAAGGCGGCAGCCGTC
2204683 32 100.0 37 ................................ CGCATTTACTGCGGCCCTGCCGTGGTCGAGCTACCAG
2204614 32 100.0 34 ................................ CGCGTATGCCTCCGACAAATTGTTGATGGGCCGG
2204548 32 100.0 35 ................................ CGGTGACATCAATGCCCAGCGCCTTGTTCGCATCG
2204481 32 100.0 35 ................................ CGCGCATGATGGCGATCGGCTTGGGGAGCGTACCC
2204414 32 100.0 37 ................................ ATTTCGTTTGAGCCGCTGCTCGGTGACGTGGGCGAAG
2204345 32 100.0 34 ................................ GTTGCGGACTGGTAGCCTTCTTCGATGGTGCGGT
2204279 32 100.0 33 ................................ CATGAGAATGTCGCCATATCGCCCCTTACGCCA
2204214 32 100.0 34 ................................ CCAGAAGCATACTCGCGCAGCGTCTTGAAGCCAT
2204148 32 100.0 36 ................................ TTGTTCCGGAAAGGACAGACCCACCATGAAGCTCAA
2204080 32 100.0 34 ................................ ATTTCTACGGAGAAATCATGAACCTGATTGACAT
2204014 32 100.0 35 ................................ CTCTGGTCATACCAACAGTCGCCGACGAAGGTTCT
2203947 32 100.0 38 ................................ CTGCTCCTCGTGCTCGTGCTTGAGATGGAGAGCTGCCT
2203877 32 100.0 38 ................................ ACTGCATCAAGATACTGCACCAGCGTGCGCAGACGGCG
2203807 32 100.0 35 ................................ ACATCACATCCGGCATGGACTTTGTGAACCAGATT
2203740 32 100.0 36 ................................ CACGCCACCGCAGGCCGCGATGCGGGCAAGGTGTAC
2203672 32 100.0 35 ................................ GATTACGCACATCCCGGAGAGACGGCGGGAAGGTT
2203605 32 100.0 35 ................................ TTTTGCCGCTGAAAGGTGGCGCAGCGGCACCGCCA
2203538 32 100.0 34 ................................ CGCAATGGTCTGGACATGAACAGTCCGACCATCA
2203472 32 100.0 33 ................................ CACCACTGACCGTTGCGGATGGCGTCGGCACCC
2203407 32 100.0 35 ................................ GCCAGTGGCTCAAAGGACTGGCGCTATGCTGCCGC
2203340 32 100.0 36 ................................ GATCCGTCAATGTCCGTTTTCGGCGTGTCGATAGAG
2203272 32 100.0 35 ................................ AGCGACTGAGGGCGCAGAAGCGCTCCCCGCTGACC
2203205 32 100.0 37 ................................ GGCACGTTCATGGCGAACTACGGCAAGGCATTTGGCG
2203136 32 100.0 35 ................................ CGGTCCGCGCCGATGTGAGTTACAGCCAAGCGGAC
2203069 32 100.0 35 ................................ CACTGCCGCAGGGCAAATGCATCGTCATGACTCCG
2203002 32 100.0 34 ................................ TACGCCAGCGCCAATGCGCCGGGCTCATTGCACT
2202936 32 100.0 35 ................................ AATGGCTACACCATTGCCACGAAGTCGCCTGGCCT
2202869 32 100.0 33 ................................ ACGATCACGTGGGCCAGCTCCAAGATCATCGCG
2202804 32 100.0 34 ................................ GTAGTCGGCGCTGTTTCGGTAGTGCGCCTTGTTC
2202738 32 100.0 34 ................................ TTCTTGGCCAGAACGGCAGTGATGGGCGGCTTCG
2202672 32 100.0 35 ................................ TCCCCCTCCCTCGCCGCGCTCTCTGTCCGCAGCAT
2202605 32 100.0 33 ................................ AAGCGCCTGCTAATCGATGGGGACAGCACGATG
2202540 32 100.0 34 ................................ AGCTTTTCGATGTCAGGCTTTGCCATGTGCGCAC
2202474 32 100.0 36 ................................ CCGATCCTGCCGATTGACTGCGAAGACCGCCTGTAC
2202406 32 100.0 34 ................................ ACGCGAAGGGGCATGGATGATCGCCACTGTCACC
2202340 32 100.0 34 ................................ TGGCGAGCTCTTGGACGGCACGATGCGGTACCGG
2202274 32 100.0 35 ................................ GATGGCATCGGTTGCCACCTCGCGTGTCGCATCGG
2202207 32 100.0 35 ................................ ACTGCATCAAGAACATCGATGGTGTCGCGCACCTC
2202140 32 100.0 35 ................................ AAGCCGATGCCGAAGCGGGAACGGTTCTCGCTGCG
2202073 32 100.0 34 ................................ AGGACAATCATCAGCAGCCAGCCGTCGGCCTCGG
2202007 32 100.0 33 ................................ ATCGAACTGATCTATCAAACCAAAAAAACCATC
2201942 32 100.0 34 ................................ AGCTAGAGAGGTACGCGACATGCAACGAGCACCC
2201876 32 100.0 34 ................................ TTGCGTCACCCACAAAACTTTGCTGTTGACGGTG
2201810 32 100.0 35 ................................ CACGCCACGACGGCACCCTGCACGGCACAGCAGGC
2201743 32 100.0 34 ................................ TCGCTCACCTCCGATCCGGCCACGTAGCCGGGAC
2201677 32 100.0 42 ................................ GTTGAGTGGTGTCGTAATCGCGCGTGTCGCGGCTAACTTCTT
2201603 32 100.0 0 ................................ |
========== ====== ====== ====== ================================ ========================================== ==================
60 32 100.0 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC
# Left flank : ACCCGCCTTTTCTTTGGAAGTGAGATTTGCGCATGATGGTCCTTGTCAGCTATGACGTGCACACAAGCGATCCTGGAGGAGCGCGGCGCCTTCGCCGCATTGCCCGTGTTTGCCAGAACTACGGGCAGCGAGTCCAATTTTCTGTGTTTGAACTTCACGTTGATCCCGCTCTGTGGACACATGTGCGAGAGCAGCTTTGTGGCTTGATTGATGAGTCCGCTGACAGTTTGCGTTTCTACCACCTCGGCGCGAAGTGGCACGGAAAAGTGGAGCATGTGGGAGCCAAGGCAACCTTGGACCTAGAGGGCCCCTTGGTTCTTTGATGCGCGAACCTAAAGCGATCGAGCTGTTCCTAGGCGGTTCGCGCGGCGCCAACATCTTGTGATCATTAAAAATTTCAGAAATTGAGTTGTCTTGGTTGCGTTGATGATCAGGTCATGCGGGGTAATCGCATTTGGGGTGGATATTGGCGTTGTTATACGTGTAGGTAAGATGACAGG
# Right flank : ATGCGATACGCCGTATGCGTTCGGTGAACCCATCTTGAGTCGAGGACGGTAATCGACGATCGTCCCCACGAAGGAGATCGTGGGGACGATGGAACGATTGATCGATGGACAGCGCCGACTGCGGCGCGAGTACAGCGCTGATTTCAAGGCGCTGGTGTTGGCTCAAACCCGTGGGCCGGGTGCATCTGTGGCCGGTGTAGCCTTGAGTCACGGCCTGCACCCGAATATGGTGCACCGCTGGTTACGCGAAGAGCGCTTGACGGGTACACACGTCCAGCAGCAACCGCCGGCCTTCGTTGCCCTACCTGTTCCGACGGGCGTCAGCGATGTTCGCGTTGCTCAGACGGCAGGGGCTGCCTCGGGCGCGGAGGGCGAGTTCATTCGTATCGAACTGCAGCGTACCGGCGCCACCATCACGATTACCTGGCCGGTGACGGTGGCTGCTCAATGCGCCCAGGCACTGCGTGAGTTGCTGCGATGATCCGTATTGATGCCCTTTG
# Questionable array : NO Score: 9.26
# Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: R [0.74,9 Confidence: HIGH]
# Array family : I-C [Matched known repeat from this family],
//