Array 1 200544-201561 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGUD01000006.1 Eubacterium limosum strain 8486cho Ga0206405_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 200544 30 96.7 35 G............................. GAAATGAAAAAGAGACAATAAAATGTTTAAAGCAA C,GGCG [200548,200552] 200614 30 100.0 37 .............................. CTACAAAACTTGATGCAGATTTAGAGTATAAAAAAGC 200681 30 100.0 36 .............................. CACTTGTGCGTAAAACCGTCAATATTGTCACCAACA 200747 30 100.0 37 .............................. GCTCGTCCAATGCCTGTTTAACGGCTTCTGGTGACTT 200814 30 100.0 34 .............................. TGCGTCAGCTCGACCGCCAGATCAGGGATAACGT 200878 30 100.0 34 .............................. CTATGGATGAATTTTTAAACTATCTATTTGCTAT 200942 30 100.0 36 .............................. TTGTCTAAGTCCGATACTTGTTACGTTTGCTGTTGC 201008 30 100.0 36 .............................. AAGTTGTCCATTTTCAAAGGCATTCAAAACATCCAG 201074 30 100.0 36 .............................. TCAACTTACCAAGCCCCTTGACTTTCCCATGGCTTT 201140 30 100.0 36 .............................. TCGTCTTTTTATTTATCTTTTATATTATAATGATAG 201206 30 100.0 34 .............................. AAGCCCGACAGGGTATAGCCTTCATCTTCTTTGC 201270 30 100.0 34 .............................. CACGTTCGCCTTGCGGCCCGGTTTCCCCTTTCAG 201334 30 100.0 36 .............................. AGCGTTCGATTGTAATGCTATGGGAGCCGTGGGTTA 201400 30 100.0 36 .............................. CCAATTAATTTTGTCCATCAATCCTTACCTCCATTC 201466 30 100.0 36 .............................. GATGACTAAAAAACAGCAGTTTATTAACAGGATTAA 201532 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.8 36 ATTTAAATACATCTCATGTTAATCTTCAAC # Left flank : TCTGCCTGATTTCATCGAGATAAGCAGCCATATCCCTTGTGGGATCTGTGGCGTTCAGGCCAAATACCACTGGAAAATCACCCACCAACGGAATAAGCTCCCGAATACCAAACTCATAAACCATATCATTGCTGTTGGCATAGGGCAAAAGTCCGCCAAGAGAACCGCGTCCCATCCCGCGGAAAATGCCTGAGTTCAGCGCCAGAAGAAAATCAGCGCCGCCCTGAATCGCGTATTTTGCCGTCAGCCCCGTTCCAGACGCGACGGCAATCAAATGATTCTCTGCCTCAATTTCCCTTCTCAATTTCTCCAGAAAAACTTCCCTCGAAAGCATGCACTTCCCTCCTCATCTTTTTATCCATTATCCGATAATATACTTAAAACCAGCCCAAGCTACACCTCTGCTTCGTAAATTCCCTTTAGAACACTAACACTACAATAGCCAGTAAAACAATACTTAACATTCACAAAATACAGTTTGAAAAGCTCTGTATATTGTT # Right flank : CCATAGCAATCGAGCCAATCTTAAATTAACGAATACCTTCCAATCCCTTTGGCTTAGCCATTTTTTGTCATTTTTACCAAGCCGTTAAGGTTTATGATATTTTCATCCCATTTTCTTTCCAAAGCCTTTACTTACGGTTCCTTTTACCCATCTGCACCAAAAGATGCCTGGGAAATTCTTAAATCTTTCTCATAATAAAATTATACGCGCAAAGCCCCCTGAGGGCAACTCCCTATGGACTTTTCTTGAAATGGTTTTTTTATAGTACACAAAAAATTGCAGATAACGCTTGCAAAAAGAAAAAAATGCCGTTATAATAAAAATCAAGTTAATATTTATGAATGATATGGTGCCCCGTAAGGGGAGAATAGGGAATCAGGTGAAAGTCCTGAGCGAACCCATCACTGTAAGCGGTAGTGACCGGCAAGTGCCACTGAAAGGGAAGGCGTCGGTTCATGTTAATCCGTAAGTCAGGAGACCTGCCTATGATTCTTAACGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 353237-355282 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGUD01000005.1 Eubacterium limosum strain 8486cho Ga0206405_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 353237 30 100.0 36 .............................. TTTATCATTGGAGAGATTTACGCCCGCCTGTTCAAG 353303 30 100.0 35 .............................. ACCGGATAACTGTCCATGGCTCCGGCTTCATCGGC 353368 30 100.0 36 .............................. TCCTTAATCTTGCACGCGCGTACTTTTTCAATGTCC 353434 30 100.0 36 .............................. TCCCTTCTGGCCTTGGTGCACAGAACCGCAACAACA 353500 30 100.0 36 .............................. TCGGTGGATAAAATCAAAATGGTTACACGGGCTATC 353566 30 100.0 36 .............................. CGCTCTAAAATCCAGTTTTCTTGTTCTCTTATTTTT 353632 30 100.0 37 .............................. TTATTCCGAAAACCGCCCAGCTCATGGTGCATAAGCC 353699 30 100.0 36 .............................. CATTTTCGAGCGCAGTATTTGTCAAATCCAATTCCC 353765 30 100.0 36 .............................. TTTTCGATCCCGAAACGCGGGGCTTTTCCATTATTT 353831 30 100.0 34 .............................. GAATATGGCGAAACCGATTCAAAAACCCTTGCGT 353895 30 100.0 36 .............................. AAGATATGGCAGATATCCCAAGGGCGATTAGAGCAA 353961 30 100.0 35 .............................. CCGAAAAGATCGCCCCCTACAGCTATCAGATCCGT 354026 30 100.0 34 .............................. CGCTTAAAATGCTGGATGTTATAAATCCGTCTGC 354090 30 100.0 36 .............................. TGAATATTAAATACATTCCTGTGATTATCTGTGGGA 354156 30 100.0 35 .............................. GGCTTCAAGGGTTTCCAGATTATTTATTTGAAAAG 354221 30 100.0 34 .............................. AGAATTCCGTTGACCACGTCAATAAGTGCGTTTG 354285 30 100.0 34 .............................. TAACGCCCTTCGATCCGGTCAATATGGCCTTCTT 354349 30 100.0 36 .............................. CGAATTGATAGGGCCAGTACTCGCCGCCGTTTACTA 354415 30 100.0 35 .............................. GAAAGAGCACGGTACTGTGTCTGTACGCTCTGCGG 354480 30 100.0 36 .............................. ATATAAAGCATTCGTTTTTCAAAGTCCACACGATCC 354546 30 100.0 36 .............................. TGGCGAGTAAAGATAAGTACACCAAAGATTTCTTCC 354612 30 100.0 36 .............................. ATGTAAGCGCGGTTGAAGCCGTTGCGTCTCCAGATT 354678 30 100.0 36 .............................. GGCCATCTTTCATTCTGGCCATAAAAGAAAAAGCAA 354744 30 100.0 35 .............................. ACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGC 354809 30 100.0 35 .............................. TCAATTTTGAATAAGCGTTCAATGACCCTGCTTAA 354874 30 100.0 35 .............................. GCGGCTTTCTGAGCTGCGACTGCTGCGGCCCTGGC 354939 30 100.0 35 .............................. AGTTTAAATCCCTCCCTTACGCAGATGGCCTGCAT 355004 30 100.0 36 .............................. AAACCGTCAATGCGCCTTTTCTGTATACCGACTATA 355070 30 100.0 35 .............................. ACAGTTCTTGTCAGCCATTGGCGAGGATTTAGGGC 355135 30 100.0 36 .............................. CCAGCGGATACAATATCTCCGTCGTAACCTTCGTTT 355201 30 86.7 22 .........................G.CTG CGGTGTAAGGCACTATAGGAAA Deletion [355253] 355253 30 70.0 0 ........A...T.AA..C.A......TCA | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 98.6 35 GTTGAAGATTAACATGAGATGTATTTAAAT # Left flank : TTTATCCCCTTTAATATGGGAGAAAAGCTATGAGTGCAAATAAAAAATTTAATTATAATTATGCCTTCGTGTTTTATGATGTCAATGAAAAGCGTGTGGCTAAAATTTTTAAAATTTGTAAAAAATATCTTGTGCATTATCAGAAATCTGTATTCAGAGGAGACATAACCCCTTCAAAATTGATTGCCCTGAAAAACGAACTGAAAAAAATTATTGTTGAAGATGAAGACTTCGTCTGTATTGTAAAACTGCTGAATGGAAATGTCTTTGGAGAAGAAGTCATGGGCATCTCCGAATCCTCAGAAGACCTTTTTCTGTAGCCCTGTTTTACCAGGCGCCGAAAAGTTTAGAAGGCTAGAATCCTTTTAAACAAAAGGTTTGAGCGCCATTTGAAAGAAGAATTGACGAAAATCTCTGCGGCTGGTAAATTTGTAGAGAAATGGCTTGAAATCAAGGGTCTTAGAGAATATAAATAGAGGAAGAATAGCTTGATTGTTATG # Right flank : AACATAAAAATAAAAACCGCCAGCATATGCTGGCGGTATAAAAAGCTTTTATTCTTCCTCGCCATTCTCGAACAAAGTCTCCTCATGTTCGCCGTAGAGGCTGTCCAGCTCCTCATTAAGCAGCTGGTTTGCGAGGATAACTTCTTTAATTTTCTGGACCAGGCCAGAGGCTGTCAGCAGGCAGGCTGGGATGATGATAAACCAGAACATGTGAAACATACTGACTTCGCCGCCGGTAAAGAAGGTGTATATCAGTCCACCAAAGCATCCGAGCATGATGACAACAGTCACGATAAGGGTAGCGTTGAAGGACATATCCATGGTCAGGGCCACAAAAATGCACAGAACAAAAAGAATCAGGTAGTCCATAGCAATAAAACGTCCCGAGGACAGGGCAGTAAATACCCCCATGCCTAGCATGGCAATAACAAATAAAATCAGGCGCAAGGAAACGGCGGAATATTTAAAGGCGCCGAGGGAAACGGCATCAACGTTTTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //