Array 1 59927-58675 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPS01000023.1 Flavonifractor plautii strain BIOML-A1 scaffold23_size118650, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 59926 33 100.0 35 ................................. CGCCCGCCTGGCCTGGAACACCCGCACGCCGATTC 59858 33 100.0 35 ................................. AGAGGTCTGAGCGTCCAGAGTGGCGGTCAGATAAC 59790 33 100.0 35 ................................. AGAGAAGGGGATTATGGCCGGCCGGGATGCCGATG 59722 33 100.0 34 ................................. CTTTGGGGTATCCCCAAATACACACCCGTTGTCC 59655 33 100.0 33 ................................. TTGCGTTGGCAATAAAAGCATCCATAATAAGCG 59589 33 100.0 37 ................................. GTTTGGCGTCATCTTGCGCCCTCCTCCCAATTTGCAC 59519 33 100.0 34 ................................. GGCCCCGTGCCGATTTTGAACCATGCGGCGGGGC 59452 33 100.0 34 ................................. TTCAGCGACGCCCATCCTGTGGGTGACGGCACCG 59385 33 100.0 36 ................................. GTAAGGAGGCCCTGCTCCTGCTCAATGATGACATTG 59316 33 100.0 37 ................................. CCGGAGGAGGGCGAGGACGGCAAGATCTATGTGGCCG 59246 33 100.0 34 ................................. TAGAGCTTTGCTTTATGAACCTCGTACCGGGCTA 59179 33 100.0 34 ................................. TCCAGGATGGCGCTCTGGCCCTCTGCGAGCAAAT 59112 33 100.0 37 ................................. AATGGCGTCCAGTCTCAGATGTGCAACATGGCCGCTC 59042 33 100.0 33 ................................. CGCCACCCCTCATTGGTGCAGACATACCGCCGC 58976 33 100.0 33 ................................. CCAAAGAGCGGTTTTTTGTCAAGACACCGAAAA 58910 33 100.0 33 ................................. TGGTCAACAGTGGGAGTCAGGAAGCCGCTGCGG 58844 33 100.0 38 ................................. AGTGAGAAATACGACATCACCAAGCATCCCCGGTATAA 58773 33 93.9 34 ............A............G....... CAGCGGCTGGACCGCGGCCACATGGAGTATGTCT 58706 32 93.9 0 .................-.............C. | ========== ====== ====== ====== ================================= ====================================== ================== 19 33 99.4 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : TCCCTCCAGTAAAGGTGACCGCCTGGCTTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTTGTCCACAAGGCCGCGCAGCTTGGCGCGCATCTGGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATGATTCCACCCCTTGAGCTTCCACAGGACAAGCAGGCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAACGGCGTCCAGTCTCAGATGTGCAACATGGCCGGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAGCCCTGGCAATACGGTCACGGGGAAACAAAGGCAACGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATAGACGGCCCGGTCAGAGGCCAAGCGGAAGTCGGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCGCCCGCCTGGCCTGGAACACCCGCACGCCGATTCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTCTTACAGGGGCGCCTGGTCAGTTTGCAGGAGACGCCGCATAGGGGCGCGGGTCGATTCAAATTTTCACCCCGCGCCCCTGCTGTTTGCGTTTCTTTTCGTTGACTGGTATAGTAGGGAATGATATAATAGGATGATTATGACAAAAACTATGGTGGGAAGATCATATTATGTGGATTTCAAGTGACTGGAAGGACTATGAGCTGCTGGACTGCGGCGGCGGCGAGCGTCTGGAGCGCTGGGGCAAGTATCTGTTGGTGCGGCCCGATCCTCAGGCCATCTGGCGTCCGGAGGGGCGGCATCCCGGATGGCGGAGGCACGACGCCCGGTACCAGCGCGCCTCCACCGGAGGGGGCCAGTGGGTCAAGAAGGAACTGCCCCAGCGCTGGACATTGGGTTACAAGGGGCTGACCCTCAACATCAAGCCTATGAACTTCAAGCACACCGGCGTCTTTCCGGAGCAGGCGGCCAACTGGGATTTCGCCATGGAGCGCATCCGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 60875-60023 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPS01000023.1 Flavonifractor plautii strain BIOML-A1 scaffold23_size118650, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 60874 33 100.0 34 ................................. CGCTTCGTCCTGCTCATAAGGCAAGGGATTTAGG 60807 33 100.0 37 ................................. TCGCCGTCCAATGCAAGGGACAGATAGGATTTCAGCC 60737 33 100.0 34 ................................. CGCTTGCCCACCAGCTCGGAGAGCGCGTCCTCAC 60670 33 100.0 36 ................................. TTCGATATCTGCCTTCATAAAGCGAGCCATCTCAAG 60601 33 100.0 34 ................................. TCATATGAGCGGCCTACAGAGCCGGATTGCACGG 60534 33 100.0 37 ................................. CCTGGCGATCTCCGTTGAAGGGGAGGCCCTGGGCAGC 60464 33 100.0 35 ................................. AAGATTCCCTCCAGTAAAGGTGACCGCCTGGCTTA 60396 33 100.0 35 ................................. TTGTCCACAAGGCCGCGCAGCTTGGCGCGCATCTG 60328 33 100.0 36 ................................. GATTCCACCCCTTGAGCTTCCACAGGACAAGCAGGC 60259 33 100.0 34 ................................. AACGGCGTCCAGTCTCAGATGTGCAACATGGCCG 60192 33 100.0 37 ................................. AGCCCTGGCAATACGGTCACGGGGAAACAAAGGCAAC 60122 33 100.0 34 ................................. ATAGACGGCCCGGTCAGAGGCCAAGCGGAAGTCG 60055 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 13 33 100.0 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : GGACGCCTATCCGCCCTTTTTGTGGAAGTGAGGCCATTATGCTGGTTTTGATTACCTACGATGTCAATACAGCGGATGCCGCCGGGCGCAAACGCCTGCGGCAGATCGCCAGGCAGTGCGTCAACTACGGCCAGCGGGTTCAGAACTCCGTCTTTGAGTGTAAGCTGGAGCCAGCCCAGTATAAACTCCTTCAGGCCAAGCTGTGCGCAATCATGGATCCCGAACGGGACAGCCTCCGCTTTTATTCCCTGGGAAATCGCTATGAGCAGAAGATCGAACACTTTGGCTGTAAGCAGACCTACCTTCCAGACGAACCTTTGATTTTGTAGCGTGCGAAGTCCAAGAGGACACGCCTTCTCCGGCCGGTTCGCACCCAAAAAGCATAAAGGAAAGCTTCATGGAGCATAGGCGCGTTTGTTTTCGTATGCTCAGCCTTCTTCCCCTTGTGCAAATAAGCAAATTGAGCCAAGCAAACTCTCTGCTCTTTGGTAAAGTTTGCT # Right flank : CGCCCGCCTGGCCTGGAACACCCGCACGCCGATTCGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCGCCCGCCTGGCCTGGAACACCCGCACGCCGATTCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAGAGGTCTGAGCGTCCAGAGTGGCGGTCAGATAACGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAGAGAAGGGGATTATGGCCGGCCGGGATGCCGATGGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCTTTGGGGTATCCCCAAATACACACCCGTTGTCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTTGCGTTGGCAATAAAAGCATCCATAATAAGCGGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATGTTTGGCGTCATCTTGCGCCCTCCTCCCAATTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34147-34450 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPS01000005.1 Flavonifractor plautii strain BIOML-A1 scaffold5_size129061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 34147 33 97.0 35 ........C........................ AACTTCCATAAGGTCTGGTTATCGCATTTGGTACA 34215 33 100.0 34 ................................. ATACGGGGTACACTTCGTGATATGCACGCCAGGC 34282 33 100.0 34 ................................. TGCCGGACGACCTGGGCTCTGAGTTTCTGGTGAC 34349 33 87.9 36 ........C..C....A.....T.......... GCGTCTCAGGAGCACCTCAAAAGACGCACCAGAGGC 34418 32 75.8 0 ........C.............T.A..CCT.G- | T [34443] Deletion [34450] ========== ====== ====== ====== ================================= ==================================== ================== 5 33 92.1 35 ATCGCTCCTCGTGAGGGGAGCGCGGATTGAAAT # Left flank : CAATGTCCAGCTGGCGGAGAAGACCGGCTTCTCCGAGGAGGATGCCCAGGTGATCAAGGAGTGCCTGCGCACGCTCTTTGTCAACGACGCATCTTCCTCCCGACCGGAAGGCTCCATGGAAGTTATCAAGCTGTTCTGGTTCGAGCATGATTGCAAGAATGGGCAGTATTCTTCCGCCAAGGTCCACCGGTCTGTGACGGCTACTCTGCGGCCCAGTGTCGAGGTCCCCACGAAGGTTGAGGATTATGAGATCTCTGTGGAACCGCTTGTTGGGCTGGCCCTGGAGGAACTGGAGGGGATGTAAGATATAGCAGGCCTTATGAGGTGCGAACATGCACAAAGACATGCTGCTTAGTTCGCACCTTGCATCTAATAATTTCCCGGACCAATCCCATACATTTTGTTCTACTCCTAGTATTTTGGCTGGATATACACAGCAGGGTTTGGCATTTTACTACATTCTTTTGCCGAAAATATTGCAAATTTTGTTTTAGTTTGCT # Right flank : GAGGAGGGGCTCAGCATGTTCTGGTAGTTGGCATCAGGGCACTGTCCAAAATGGCTCTCATTACTTTTGCATAGAATAGTTTTAGACAACGATTAGGGGAATTAACATCGTTGGATAGTCCAATATTTGTCTAGGCATTTGCACACAGGCACCACATGACCTTCGGAGAAGGTCACCACATGACTTTCTTTTCAGAAAGTCACAGATGCCGCTTTATATCCATGCAGCTAAAGCAGAGGGTCTTACAGCGGCACAGATAAAAAGGAGAGATAAGACATGAATGCCAGATTATTAACTGCCATGGAAACGGAGCAGGCGCTTGCCAATCTGCTGTCTGACCTGAAGGCCCTCATTTCCGGGGAGATCAACGAGACACCTCCGCTGGACGGAGTGACGCCGCTCAACGGCAGCCCGCGTTGTGCAGTGGTGAGTTCCAGGTCTATCATGGAGTCACTGCGTTTCAACATGTCGCCTCGCTACTATCTGCAGGGCGCCCAGGC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTCCTCGTGAGGGGAGCGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //