Array 1 7739-5929 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLE010000032.1 Fusobacterium nucleatum isolate Fusobacterium_nucleatum_BgEED12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7738 30 100.0 36 .............................. GATATACCGGATAGAGAGGAGCTGATAAAAAGAGGA 7672 30 100.0 36 .............................. TTTTCAAACAAGTATTGTCTAAGTGTAGCAAATATT 7606 30 100.0 35 .............................. GGAAGTAAAGAGCTTGGATACTGGAATTAGTCAAT 7541 30 100.0 36 .............................. TTATATTTTCATCTGTTAGCTTTTGTATTCTTTCAG 7475 30 100.0 36 .............................. TCATCTAGAACATCAAATTCGTTAAAATTTAAAGCA 7409 30 100.0 36 .............................. ATGTATATCAATTTCTATTATGATTTTGAAAATGAT 7343 30 100.0 35 .............................. TAAATTAAAAAAAAATAGGAGGTAGAAACTATTAG 7278 30 100.0 38 .............................. AATATAGATTAGAAAAGTCAATTTCTAGTATGTCTTTT 7210 30 100.0 36 .............................. TAACTATAAAAACAGTGATATACATTATTTTCACTA 7144 30 100.0 36 .............................. AAAAGAATATATAATAAATAATTGTGATAACTGGGA 7078 30 100.0 36 .............................. AATTATGTCAATACTAAATTTTATAAATTTTTCTAA 7012 30 100.0 36 .............................. AAAACTAGCAATTTATGGAGAGTTGCTAGTTTTAAA 6946 30 100.0 35 .............................. ATTTTAGAGGTGTTAAATGACAATTTAATTTTTAA 6881 30 100.0 34 .............................. CCTAGAAGAATTATTGCATTAGCAAAGGCTTGTG 6817 30 100.0 36 .............................. TCTTTTGCCTCCTTTGTTGCAACTCTTTTATTGCAC 6751 30 100.0 36 .............................. TCAGCAAGATTAGAAACAAACGAAAATGATGTACAA 6685 30 100.0 37 .............................. AAGAAAGTTCCTCCAACTGCATAAGTTAGAATTCTAG 6618 30 100.0 36 .............................. TTTAAAAGCTTTAATTCTTCATTTTGACTCAAATCT 6552 30 100.0 37 .............................. TTATCAAGAGCCTCAATAGTAAGCTCTTGATTTCTAA 6485 30 100.0 35 .............................. AGATAAAAACACTGCTAAAAGCTGGTATGAATTTA 6420 30 100.0 37 .............................. AAAGTGTTTTTATTTATTGGAGTTTTACCTCTTTCTA 6353 30 100.0 36 .............................. AGTAGAAGGGGAACAACATAGACAGAGATGTCGTGA 6287 30 96.7 36 .......G...................... GTTTTATTTTTAACTATCATTTTTCCTCAACTCATA 6221 30 96.7 36 .......G...................... TCGGGAAGCATTTCATTAACTTCTTGAAATTCTTTT 6155 30 96.7 36 .......G...................... ATAGAATTAAAATCATCAATGGAAGAAAAATTTTCA 6089 30 96.7 35 .......G...................... CGTGGAGGTCAGGATAAAAGGACCCCCTTTTTTTT 6024 30 96.7 36 .......G...................... GCAGTTAAGTTAACCGTAAATGCAAGTTTTGATTTT 5958 30 86.7 0 ........A......A.......A.A.... | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 98.9 36 ATGAACTATAAACTTGAAAAGTTTTGAAAT # Left flank : ATTTTCTTTAAAGAATTCATATTAGTTTAGGAGATGAGGAAAATTGAAAAATATAAACTATAATTATGCTTGGGTATTTTATGATGTTTCAGAAAAGAGAGTAAATAAAGTTTTTAAAATATGTAAAAAATATTTATCTCATTTTCAAAAATCTGTTTTTCGTGGAGATATAACTCCCTCTAAATTAATTAGTTTAAGAAGTGAATTGAAAAGCATAATAGTTGAAAATGAAGATTTTGTCTGTATTTTAAAATCAATAAGTCCTGATGTTTTTGGAGAAGAAACTTTGGGAAATCCAACTCCAAATGGAGAAAATATATTTTTATAAATAAGAAAATTTCCCAAGCAATATTCTAAAAAACTATTTAAACTTTCCAAAATATGGTTGTTTTAGAAAAATTAAGTAAAAAATAGAATTGCTTGGGAAAAACATATAAAAAATACTTGTAATATTGAAAAAAATAAGGTATTATAAATTTATAAAGCTTGAAAAAATAGCT # Right flank : TCTGTTATATACAAATCATTTCTATTAAAATACTGATATTATTGATATAAGCTATCTAAGTAAAATTTAAGGTGAATAATTTAAAAATAAATAGAAAATAATAAATTAAATGTATAAACTTTTCAATGTGAAGTAGTAAAAAGAGAAAAATAACCAAACTCATATAATAAGAGTCAAATATTATATAGCATAATAATTTTAGAAGCAAAATATGTTAGATAGAAAAGAATTAATAGATTTAATAGAGGAATTAAAAAATTTTAGTGGAACAGAAAGGAAAGAAGAAAAACTTTTAGGAAAGTTGGAAAGCTTGGTCTTAGATCCTGAGATCTCTGATTATATATACTGGACTGATATGAGTTCAGAAGAAATAGCAGATAAAGTATTAAATTATAAGCCAATTATATTGGGAAATAAATAGAAATCTATTAATAAAGTTTTTGAAACAAGGAGGAAATATGAAAAGATTTTCTATACATGGAACAGAAGAAGGAAACACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAACTATAAACTTGAAAAGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 125950-126647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLE010000011.1 Fusobacterium nucleatum isolate Fusobacterium_nucleatum_BgEED12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 125950 36 100.0 30 .................................... ATGATACTTTGCAAGTATTGAAGAGCAAAC 126016 36 100.0 30 .................................... TCATTAAATTTCTTGTTATCTCTTAATAAC 126082 36 100.0 30 .................................... CGAAAAAGATTATAGAACAGATGGTGATAA 126148 36 100.0 31 .................................... TCCTCTTCTAACTCATCTATATGATGTGAGA 126215 36 100.0 30 .................................... TTTTTCTTAAACTTCTTTTAATATATAACC 126281 36 100.0 30 .................................... TTTTGAGTTCTCTTGAAATTTATGCTATAT 126347 36 100.0 30 .................................... AATCTTGGGAAGATTTAGCAACTGATAGTA 126413 36 100.0 30 .................................... AATTTGTTCATATAAAGTGAAATTAAAAAG 126479 36 97.2 30 .............A...................... GAGCAACTGAGAGAAGAAAAGGAAGAGTGA 126545 36 100.0 29 .................................... CAACACAACTCTTATCTTAGCAACTGTAG 126610 36 83.3 0 ..................C.......C.G..T..CT | AA [126631] ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.2 30 GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Left flank : TATTATAAGGAATTAAAAAATTTAAGTGAAAATGAGTTTTTAAATGAAACTTTAGAAATTAAAGAAATTTTAAAAGATTATATTAATAAATTAATAGAAAATAATTATTCATTAAAGTTTGAAGATGATTTAGATGTTAGCCAAATTTTAAAAGCATTTAGTATAAAATTTGAAAGAAGTGAGGACTTATTATTAAATTTATTTGAATGGTTAAAAATATTAAATGAAATCTTAGGATATGAGATATTTTTCTTTATAAATATAGAAAATTTTTTATCAGAAGATGAATTACTAGAATTTTCTAAATTTATAGTGTATAATAAATATAAAGTTGTTTTTTTAGAAAATTTTTATAGAAATAAGTTATCTGATAATGATAATTTAATTGTTATAGATAATGATTTATGTGAAATTTTCTAATCTATTTAGAAGCATTGAATGATTCGTAACCATTTTGATTAATTTCAGCTTTCAGTATAGACCTAAATATATGAATTGAG # Right flank : TTTTTTCTATTTTAAAATAACAAAAAAGGGGCATTTGAAAAATAGCTATTTAAAGTAGATTAAAATAATAGTGAAAGAAAAATTCACAAGCTTCTTGTTCAGTTTGAAAATAATGTTTATCTGTAAAAGCATGACTATCAGCATAACAAACTATCCAATTATCCTCTCCTTGAATCAAACACACATCATTAAAATGTAACTCTGTTGTTATATAATAAGTCTTAAAATAATATTCTTTTGATTTTTGAGCTTCAGCTTCTAAAACTTTTAAAAGTTCAGGAACAGTTTTTATTGGAAAATATGATAATAATTTTTGCCTTCTAAGTTCATTCTTTTTTTCTGTATGTAGAGTTACAAAATATACCCATATTTTTAAAACAATAGCAACAGGTAAAACACAACAAAAAAGAACCATAAGTAAAATTTTAAATAATATCATATATTTTTTACTCCTTTAAAATATATTGGTAATCTTCTAAATGTTCTAATTCAAATTCAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTGAGAGTAATGTTATTTTAAATAGATTCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //