Array 1 4038-2276 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMM01000024.1 Paenibacillus macerans strain JCM 17693 sequence24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4037 32 100.0 37 ................................ CTGCTTCGGATCATCCAGGCCTGTAGCGTCGGCTGAA 3968 32 100.0 34 ................................ TGTAAAAATCAGTGTCAAAATCTACGAAGTCAAC 3902 32 100.0 37 ................................ ACAAAGCCTCCTAGAGCGTCACAACACGTTAACCAAG 3833 32 100.0 34 ................................ ACAATGGACTTCCAGTTGAATAGTTGTTGCCCTT 3767 32 100.0 36 ................................ CATGTACAAAGTGCAACCCACATGGACAAGTGCAAA 3699 32 100.0 33 ................................ GATTAAGCCGATCGCTCAGCGCGCGTTTAATGG 3634 32 100.0 36 ................................ CATTGGTTTTTCCTCCTCAAATCCGCTATGGGTGGC 3566 32 100.0 33 ................................ TTTCAGCCGTTGTACATTTTTTTCAATTGTTGT 3501 32 100.0 37 ................................ TCGGTTGCGATCCCTAACATCGCAGACAAGGAATAAC 3432 32 100.0 33 ................................ TCGGCCAAGACAGCCGCAGGATTTCGTTTGGCC 3367 32 100.0 33 ................................ TAAAGTCTCGTCTAACAGCGAGGCTTTTTTATT 3302 32 100.0 37 ................................ GCCCCTCGCGGACCTACGACACGTAAAACGTGACATC 3233 32 100.0 33 ................................ ACTTTAAATCGGCGATCCACAGAAACGAATTTG 3168 32 100.0 34 ................................ CGTAGCTTTTATGGCGTCTTCCACGTCTGGACAA 3102 32 100.0 33 ................................ CTTTACCTTACATATGGCGCATGGGTTTTCAAA 3037 32 100.0 34 ................................ AGAAAGATATTGGCGCAACTTTTACGGTGCTCTC 2971 32 100.0 34 ................................ CAGGCTCGGATATCCTCGTTCCCGTCCTTACCTT 2905 32 100.0 36 ................................ GTCTCGCCCGTCTCCGGGTCAGCGAAGCCCTTCAAA 2837 32 100.0 35 ................................ CCGATGTATTCCCGCGCCTTGGCATCACTGCAGCC 2770 32 100.0 35 ................................ GACCGTCTGCTGTCGCAAAATAGAAATCCTGCCCA 2703 32 100.0 33 ................................ ATGCCTTCAACCCAAGGGAAGTAGAAGACTTCT 2638 32 100.0 34 ................................ CCGTCTCGCTGTTGAGCACTGTTTCAGCGTAAGC 2572 32 100.0 35 ................................ CCGGAGGGAGTTAGAGGCTCCCTCCTCCCAATCTT 2505 32 100.0 33 ................................ CTATATTACTAGAAAGATGTACGTAGGGGACAG 2440 32 100.0 35 ................................ TTAAGCAACTTTATCTGGCAGCTGGCCAAGCGGTC 2373 32 100.0 34 ................................ AACACAAGTCGGCGAACATCATACCCATGCTTAC 2307 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 27 32 100.0 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAG # Left flank : ATGAGTACCCGCCATTTTTATGGCAGTAGGTGAGTCGGGATGCTTGTACTCATTACTTATGATGTTCAAACAACAGGCGTGGGAGGGGCCGCGCGGCTCCGGAAAGTGGCTAAGGCATGTCAGAACTACGTGCAGCGGGTGCAGAATTCCGTGTTTGAGTGCATTGTGAATGCAGCCCAGTTCACTGCTCTGAAATTGGAGTTAACCCAGTTAATTGATGAAGAAAAAGATAGCTTGCGATTTTATCGGTTGGGCAATAACTACAAAACCAAAGTAGAGCATATTGGGGCCAAGCCATCGATAGATTTAGAGGAGCCGCTTATCTTCTAGCGGTGCGAACCCCAAGCGCACATAAAATCCCTGGGAGGTTCGCACCCCGCGTCATTAAAGGATTTGTAGAGATTTTGGTTAAAATTAATGGAAAAATTTCGTGCTCGCAAAATGGGTTCGCACTTTTGGGCTTACGAGGCCTTGTGCCACAAGGATTCGCATGGCCCGCT # Right flank : TTATGCGACGCTCACGGCGGAATACCCGGACATAGTCGCACCAGCAAAATGAGCTTTTTCTCGAACAAGCGGTCAAACGATTGAGAAATATTCAGTCCTTAAATAGCCGGGGATAGAGAAGAAAAGTACGGGCGGGGGAATGACGGAGGAAACGGAGGTCCTATACATCGTTATCAGCAAACAAGAGGTGTCCACGCTTAATAAGATTGTCAAATCCATCGACAAATCCGCCTTTATCACCATTCACGACGTGCGGGATGTGTTTGGCGAGGGGTTTTTGGATATTTCGAAGTGAGTGACAAAAAAACGCAACCTTATTTGGTTGTGGTTTTTTGTTTCTCAATAAGTAAGTTGGCAAGACGCTGATAGCACTGTGTGCTCAAGTTCGACCTGGTATAATTTGTTTATGGAGCAACAAGGAGATGGTTACTATTAAGAGTTTTGTGAAAATCAATATAATGAGTTTTGGATACGCGGTAATGTTATCTTTCCCTATACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10428-9391 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMM01000028.1 Paenibacillus macerans strain JCM 17693 sequence28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 10427 33 100.0 34 ................................. GATCATCTACCTTGGTAATCAGACGGACCTGCTT 10360 33 97.0 35 ................................C GCCGGATCGTTACGCGGTTGCTTTCCTTGGTGCAT 10292 33 100.0 33 ................................. GATTTGCCGCCACCGGCCGCGCCTCCGTATAAC 10226 33 97.0 33 ................................C GCTATGCGCTGGTCGAGTCCGACACGATGGACA 10160 33 100.0 36 ................................. GGAGATGGCAGCCTATCAACTTGCATAAACATCCAA 10091 33 97.0 34 ................................T GTATGCTGATTTGGACATGGATTGTAATATCATT 10024 33 100.0 35 ................................. CAGCTGGATTAGAGGCGGGGGCCTTTAATCTTGAC 9956 33 97.0 33 ................................T CGGGTCAGGACGAGTGACCCTTCCGCCACCAAT 9890 33 97.0 33 ................................A GTTGCGATGAATACAATTGGTCCGAGATAGCCA 9824 33 97.0 34 ................................C GCCGATGGAACCGGATAGCGTTTTTGACGAGTGC 9757 33 97.0 35 ................................A TTTTCGGGAGTTGGAACGGCTGGCTCACGCTTGAG 9689 33 100.0 35 ................................. TTAATCTCAAAATCTTTGCGGTCCCGAAACTTCTT 9621 33 100.0 34 ................................. GGACGTTGAAGGCCGAGTAAAGGCTGCTGCCCCG 9554 33 100.0 32 ................................. CCGCTGGGAATTATCCTGCGGCTTTTTGCTTG 9489 32 84.8 34 ........-..C.C.......A..........C CTATGTCTTGAAACTATTTTTAAATGAGCTCTAT 9423 33 75.8 0 ....T....C.C..C..A.........A...AA | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 96.2 34 GTCGCACCCTAGGTGGGTGCGTGGATTGAAAGG # Left flank : CGACGAATACCCTCCATTTCTGTGGAAGTAGGTGATTATGAATGCTGGTATTGATTACTTACGATGTGAGTACGGTGAATGCCGCGGGACAAAGACGGCTTCGCCAGGTTGCCAAGGCCTGTCAGAATTACGGGCAGCGCGTGCAGAACTCCGTATTTGAATGTATCGTAGATGCGGCGGAATGGGCCGCGCTTAAAATTAAGCTGATCGAATTAATCGATCCGGAGCAGGACAGCCTGCGATTTTACCAGTTGGGCAACCAGTATAAAAACAAGGTGGAACATGTAGGTATCAAAGCCTCTCTTGATTTGGAGGGGCCTTTGATTTTGTAGTGCGAATGTGAAGCGAACATGATTTTCCCGGGGGATTCGCACCAAAATGATTGCATTACATTTGAATAATAGTAAAATAAATCCATTTTATTTGTTTAAAACTAGTCGGAAAATTAGATTTTAATACAGAATATGTAATTTATAATCCATATTCTGTTAGAAATCGGA # Right flank : CGTCCAGCAGAATCGGGAAAGGGCGAGACAGTATTCCAGGAGGGCCATCCCCCTCCTCGCACTTAAAGTAAGGGTTGAACAAGCCGCTAGAGCAATTTACTCCGGCGGTTTTGTTAACTTATAAATCACGGAAGTCAATCTCAATTCCCGCTCACTTGAACAACATAGCCGGCCCTCGATTCAGCAAGTCTGTTTTTTAAAACATAATAAGTAGGTTTATCGCATTCCGCAAAAAACAGGTATCCTTTTAAATAGATTCAAAGCAGGTATAATTACGGCAAAGGAGACAGATCGCATGTTGATCAGGAACGTATATCTGCGCCTGTCGGTCAAGTGGAAGGTCATCCTCATTTTTACCTCGCTGTTGGTGTTCATGAGCGGTTTATTTATCATTGGCTTTAATTACATCAACAAGCTCTATGATCGCCAACTGCTGCATAGCTCTTCGGAATTGTTGAACCTATACTCTACAAATATTGAGAATGAACTGCGCAAGATCG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTAGGTGGGTGCGTGGATTGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19346-18846 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMM01000028.1 Paenibacillus macerans strain JCM 17693 sequence28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19345 32 81.2 34 NNNNNN.......................... TCCGGGCACGCCGGACGTTGAAACGTAGCAAAGT 19279 32 100.0 34 ................................ AGAGTGCTGCCTACATTAAGCTCCCAATAGCTCC 19213 32 100.0 35 ................................ ATATCGAGCAACAGGTTAAGGCGCTTTCGCGCGGC 19146 32 100.0 36 ................................ CGATCAGCGCGCAACAAACGAAGCTGCGCAAGAACT 19078 32 100.0 35 ................................ GCCAAGAAGTCACGCTACGTCCGGGCTACGTTATT 19011 32 100.0 35 ................................ CTCGATGAACTTGATCCGTTTATTGGCATCTTCTG 18944 32 100.0 35 ................................ ACGGCGCCGTCCAACGGATTATAAGCGAAGGTCTC 18877 32 81.2 0 ......................AA.AGCG... | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 95.3 35 GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Left flank : CCTACGCGGGTGCGTGGATTGAAAGCGAAGCGGTTGCGCGGGAAGACCGCCTTATGCGGTCGCACCCTACGCGGGTGCGTGGATTGAAAGAGCGACTTGGTCATGAAATTTCGGAGCTCTGCGCGTCGCACCCTACGCGGGTGCGTGGATTGAAAGACGCCGTTATTCCCGGGACTTACGAATTTCGGGGCCAGTCGCACCCTACGCGGGTGCGTGGATTGAAAGTTGAGTTGGTCGAATTGGTCGCGCTGTTCCTGCGTCGCACCCTACGCGGGTGCGTGGATTGAAAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGCGCCTTCCTTACAGAGTTTATAAGTCATATCTCAATGGACAGTCCATACTGGGCTGTCCTTTTTTAGTTGAAGCTGTACTTTGTTGATATGGGGGCATAAGAGCATATGATAATTCTCTAAACTAAGATGAAAGTAATATTACCCAGAAAATTGTAGAATATTGGAAGGAGATTAGAGGGGGGGTGAAGAAATAAAAAAGTTGTAGTTCTTTAGGCGTGTTTCAAGCTTTAAACTAGAGAGTCGTTTGGATTATTTTTCAGCGACAGGAGGCAGGCAATGGAATACATAGCCCATATACGTGAGAGTGACCGGGAAAACCAATTGCTTGAAACGCATTTGCTTGGGGTCAAGAATTTAGCCGAATCTTTTGGTGCTAAGCTTGGAATCGGGCATATTACCGGCCTGGCTGGAATCCTTCATGATATGGGGAAGTTCACGAAGGCATTTCTGGATTATCTCATCGAAGCGGTGAATCATCCGGAGGCTCCGCCAAAGCG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 20517-19556 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMM01000028.1 Paenibacillus macerans strain JCM 17693 sequence28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 20516 32 100.0 36 ................................ CTTGTGACTTATACCCATCAAGCCGGGATTGACCGC 20448 32 100.0 35 ................................ GTTAACAAAATGACGAGCTGCCGGCGAAACCTTCA 20381 32 100.0 34 ................................ TCCGTTTGTCAGCGCCAATCGCGGCGGAGGTGGC 20315 32 100.0 34 ................................ AGTACGACAGAGGCGGATTGGGCGTACGCACAAG 20249 32 100.0 33 ................................ AGGCTCTCTAAAACCTGCTTGACGCCGTCCACC 20184 32 100.0 34 ................................ CGCCAAGTAATGCTCTACATAGAAAGAGCCGCTA 20118 32 100.0 34 ................................ AAGACTACCTCAAAAAAGAAAGCGCCAAGGTGGT 20052 32 100.0 34 ................................ AACTCATAGCAAACATTTTAGATGTTGATCTAGA 19986 32 100.0 37 ................................ TTCCTGCATCCGTAATCACCTCGCCTCCAAGGTAACG 19917 32 100.0 33 ................................ AGAACAACATCAACAACTGGATAGGCCGGCGGA 19852 32 100.0 33 ................................ CGAAGCGGTTGCGCGGGAAGACCGCCTTATGCG 19787 32 100.0 34 ................................ AGCGACTTGGTCATGAAATTTCGGAGCTCTGCGC 19721 32 100.0 37 ................................ ACGCCGTTATTCCCGGGACTTACGAATTTCGGGGCCA 19652 32 100.0 33 ................................ TTGAGTTGGTCGAATTGGTCGCGCTGTTCCTGC 19587 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 100.0 34 GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Left flank : AGCTTAGGCTTGCAGCTAGTCGTTTGGGTTTTTCATGAAATGATTCTCTTTTGCTATCCATTCCTCTAAACCTTATATTGAGATATAAAAGGCACCACGTAGGGTGTCTTTATCGCTTTATTTTGGTGCTTTCTGCTGTCTTTTTAGTCTCATATTGGTAAACGAGCTCCGTACAGGTAATAAAAATGATCTTTTCTGTGTATGGCTAGAAAAATGAGGTTAAGATTTCATATTCAATCAAAAATATTTGCGAAAAAGGTTTACCCTTAGAGTAACTGTGAAGTAACATTTCAATATACATTGTTTGTACTTTAGCTCAACTCCATATTCGGTGCGAATATAAAGTGAACATAAAAATCCCGGGGGATTCGCACCAGATTAATCGTGCTAAATACCCTTTTTTTCAATAAATACCCATATATAACTTTCAAAAATCCTTAAATTTGGGTTTATATAGATAATTAACTCTAAGATTTTACTAATATATGTTAAAAAACGCT # Right flank : GGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTACGCGGGTGCGTGGATTGAAAGTCCGGGCACGCCGGACGTTGAAACGTAGCAAAGTGTCGCACCCTACGCGGGTGCGTGGATTGAAAGAGAGTGCTGCCTACATTAAGCTCCCAATAGCTCCGTCGCACCCTACGCGGGTGCGTGGATTGAAAGATATCGAGCAACAGGTTAAGGCGCTTTCGCGCGGCGTCGCACCCTACGCGGGTGCGTGGATTGAAAGCGATCAGCGCGCAACAAACGAAGCTGCGCAAGAACTGTCGCACCCTACGCGGGTGCGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 727-226 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMM01000007.1 Paenibacillus macerans strain JCM 17693 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 726 32 100.0 34 ................................ TTTGGCGGCAGCGGGTCGACGCTGATGGCATGTG 660 32 100.0 37 ................................ CGGTTGTTTAAGGAACAAATCGACGGTGGCTTGAATG 591 32 100.0 35 ................................ ATGCGGATCTCGAAGGTTGTTGATTGCAAAACGTA 524 32 100.0 36 ................................ GTAGCTCTAGGGCTAATTACACTGGTAGCCAAAGTC 456 32 100.0 34 ................................ AGGTCAAGCCACACCAAACCTTTGCTTAAACATC 390 32 100.0 34 ................................ CAAGGATCCAAACGGCAACGGCCAGAAGGATGAG 324 32 96.9 35 ...A............................ TTGCCGGGATCATTGTTTTTTGACCTATTACACCA 257 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 35 GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Left flank : CGCTCCCTATGTGGGAGCGTGGGAGGAATTATCGGATTTGTATAGCGGCAAACCGGGCTTTTTGGACGAGTTGAGTCAATTTCATGACCGGTCTAATTAAAGAACTCCTCCCTCGTAGGGGAGTTTATTGCTCAACTAGCTTGGCTACAAAGTCAGTAGACCGATTCATTAGAGAGATATTTGGGAAACTGTGAGGAAAAAGTTTTGGCCGATTGGAATCGAAATAAGTGCGTAAGGCTTTGTGACTTTAACGAGAAATATACGACGATGTAGCCTTCAAGTACTAAGAGGAAGATAATCAATTGGCTGTAAAAAACGGGGAAATAGCAGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGACATTCGCACCTCTTGTCTGGCGTGGGATTCCGGGATTTTGCGGCTAAATTTTCCCTATTTTTAAACCATAAAAAAGGGGATTCGCACTAAAGCGTTTCCAAACCTATGCTGGGTGTGGGATTAAGATGAACGCA # Right flank : GGTTAATAATCTTGATGTTGCGTTGCTTGAGATCTGTACCTCTGTCAATAGAGTAGACACAAAGAATCGAGAAAATTATGCGGCAGATCGGTACATACGTTCGCACTCATTGGGCGTAGAATACCCAATCGCGGAATGGATTCGTTTTCCATTGTAGAAGCAGGTAATATATTCAAAAATGCGTTTCTTGGCTTGCTTGCGTGTTTTGAACTTCTCCAAGTAGACA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2175-1197 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMM01000007.1 Paenibacillus macerans strain JCM 17693 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2174 32 100.0 35 ................................ TTTGGTTGCGTCCAGGAATATTTTTAGTTGTTCTT 2107 32 100.0 37 ................................ GGTTACCCCAAAATGATAAAAAAGGACCAGATGACCC 2038 32 100.0 36 ................................ CGAATCGTCCAAACCAGCGCCACAACCGACAGCACC 1970 32 100.0 35 ................................ ATGTAATTGAACATCAACACTGCCGCAATTTCCGT 1903 32 100.0 35 ................................ ATGATTTTGCCGCCAGTTACGCGGATAAAGTAACG 1836 32 100.0 34 ................................ AATATGGTTGTTTACGGCGTTTATGGCAATCAAG 1770 32 100.0 36 ................................ CAAGCGGAGCGCGACCGGATGCTCGAATTACTTGCC 1702 32 100.0 38 ................................ GATTCGATGGACTATCTGTTGCGTTTCGACGGCTTATC 1632 32 100.0 33 ................................ CTCAAACTTAGCGTCAAGTTCTGCGGACATGTC 1567 32 100.0 35 ................................ CAAGACAATGCGGCTGATTGTAAACCTCGTAAATC 1500 32 100.0 34 ................................ CAGCCCGCTATATGGATTACGGTTTGGCAAAGGC 1434 32 100.0 35 ................................ TGTGAGGGTGACAATGAGGTCGTAAAGCGAACCAT 1367 32 100.0 36 ................................ TTCCGCAAATTCGCCCGTTTTGTTTCTGAAATCGTC 1299 32 100.0 39 ................................ TCTTCCAGCCGGTCGATCCGCTTATGCGCCTGCTTGGCC 1228 32 84.4 0 ........................GAG...TT | ========== ====== ====== ====== ================================ ======================================= ================== 15 32 99.0 36 GTCGCTCCCTATGTGGGAGCGTGGATTGAAAG # Left flank : CGCCAAATGATCGAGGAATTAATGGATTTATATAGCGGCAAACCGGCCTTTTTGGACGAGTTGAGCCAAATCCATGACGGGTTAAATTAATGAGATCCTCCCTTGGGGAGTTTTTTGTTCAATTTAGAAGTCGTCGCCGCTTGGCTATACGGCCAAATTGACCGATTATTCATGGATGGATATTAGGAAATTTGTGGGGGAAAAAGGTTTTTGGGCGATTGGGATCGAAATAGGTGCGTAAGGCTATGTACCTTTAACGAGAAAGATACGACGATGTAGCCTTGAAGTAATGAAGAGTAATCAATTGGTTGGTAAAAGCGGGAAAGAACAGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGACATTCGCACCTCTTGTCTGGCGTGGGATTGCGGGATATTGCGGCTTTGTTTAACTTGTTTTTAAACCATAAAAAGGGGATTCGCACTAAAGCGTTTCCAAACCTTTGCTGGATGCGGGGGTTAGGTGGACGGA # Right flank : ATCGGATTTGTATAGCGGCAAACCGGGCTTTTTGGACGAGTTGAGTCAATTTCATGACCGGTCTAATTAAAGAACTCCTCCCTCGTAGGGGAGTTTATTGCTCAACTAGCTTGGCTACAAAGTCAGTAGACCGATTCATTAGAGAGATATTTGGGAAACTGTGAGGAAAAAGTTTTGGCCGATTGGAATCGAAATAAGTGCGTAAGGCTTTGTGACTTTAACGAGAAATATACGACGATGTAGCCTTCAAGTACTAAGAGGAAGATAATCAATTGGCTGTAAAAAACGGGGAAATAGCAGCGGTGCGAACCCCAAGCTCACATAAAATCCCCGGGACATTCGCACCTCTTGTCTGGCGTGGGATTCCGGGATTTTGCGGCTAAATTTTCCCTATTTTTAAACCATAAAAAAGGGGATTCGCACTAAAGCGTTTCCAAACCTATGCTGGGTGTGGGATTAAGATGAACGCAGTCGCTCCCTATGCGGGAGCGTGGATTGAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 3404-699 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMM01000036.1 Paenibacillus macerans strain JCM 17693 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3403 32 100.0 33 ................................ TCTGGCCATTACATCACCACCACCCCCAACGAG 3338 32 100.0 34 ................................ CTGTTCGGCGGGAAAGACGAACGTTCCCAAGACC 3272 32 100.0 33 ................................ ACTCGATCTAAGGTGGCTCTGCTGGACTCTAAA 3207 32 100.0 35 ................................ TTCGCAATGCCGAGACGCCGGAGCGCGGCATCGTG 3140 32 100.0 34 ................................ ATAGGATCACCACCACTTAATTAATGACTTAAAC 3074 32 100.0 35 ................................ CGATGCTGCTGCGCTCGGGTTTTTCCTTGTGCGCC 3007 32 100.0 36 ................................ AGGGAATTGAATATCAAGTGGCGTATATGCGCGATG 2939 32 100.0 36 ................................ CGTACAAGCCGCAACCCAGGCAGCAGCTTTACCATC 2871 32 100.0 37 ................................ AGAAATGTATTTATCCCCGGTTGTTGTCACTGTTAGG 2802 32 100.0 33 ................................ CCCATTAGAGAAGGAGGAAGAAGCAAAGTGAAC 2737 32 100.0 35 ................................ TCTTGAGCCTCTGTCAACTTAGGGCCACTCACAAC 2670 32 100.0 35 ................................ CCCATGAACAACAATGACCGGATACAAGAGATAAA 2603 32 100.0 34 ................................ GCTTTGCCGAGTTGCTACCATCTCGTGGGCCACG 2537 32 100.0 34 ................................ GTGCATCCCTTTGGATATTCAAAAGTAGCCCTTA 2471 32 100.0 35 ................................ ATTACCCTTTGCGACATCGACTATTAAAGTTACTT 2404 32 100.0 35 ................................ ATGAGTTTGGAGAACAGTGTTGCAAGTAAGTTGTA 2337 32 100.0 35 ................................ AACTTAGCAAAACATACCGTTTTTGCATGGATCGC 2270 32 100.0 35 ................................ AAACATCCCGATGATCGCTGGATTTTCCTGCTTAT 2203 32 100.0 33 ................................ CAATCCAGTACACGCTGCTCCTTTTCGTCGTGA 2138 32 100.0 35 ................................ ATAGTTAAACACGACGATGATTTTTTGAAAACAGC 2071 32 100.0 36 ................................ CCAAGCCCCGCGCTGCACCCGCCCCACGAAGTCCTC 2003 32 100.0 36 ................................ TTGAGAGTAAAACCGACAATCCAGCATGCAACAACC 1935 32 100.0 35 ................................ ATTACGATCATTCCTTTCAGGAAAATAAAATACCG 1868 32 100.0 34 ................................ AACTGGCATCTAATCACCTCCTTTTGGCATATAA 1802 32 100.0 35 ................................ GTGTGGTACCTGGCATATTGCTGTGACATGTGGAA 1735 32 100.0 36 ................................ GCGCCTCAAATTACTATCCAAGGCGGCGGTGACTCC 1667 32 100.0 35 ................................ CGGCCATCCACCGAACACCGGGCGACCGCCTGATC 1600 32 100.0 33 ................................ GCATTGATATACAAGTCCGCGTCATTTATCGTT 1535 32 100.0 34 ................................ TTGGCTCTGTCGATTTCGACCCCGTCGCATGCCA 1469 32 100.0 36 ................................ GCTTAGGTGGGTTGTATGAGTAATAAAACGCATAAA 1401 32 100.0 35 ................................ TTAATAGGAGGACTTATGTATGAATCTCGTACCGA 1334 32 100.0 33 ................................ AAGCAGCCTTAGAAATGCTGCATCCGACCGGGA 1269 32 100.0 35 ................................ CGTAATTGAATCCGTTTATGATCAGCCGATTGTTC 1202 32 100.0 36 ................................ TCTAACGGCAAAATCCGAACGGAAGTATTCGAAGCA 1134 32 96.9 33 ......................A......... CCGAACATGTTGCCCGGCATCCGTATGCCGCGA 1069 32 100.0 36 ................................ AAAGGTCGTCAGGCTATCGCTGTACCAGTTCTTGCC 1001 32 100.0 35 ................................ GTCCTTAGCGTGGCCCAGTTGCTTTCGGATGTCAT 934 32 100.0 36 ................................ GAAAGTGTTCGGGTTTATTGCTGACGATGTAGTCCC 866 32 96.9 36 ............A................... TTCGATCAATTCTTTAAAACTCCAAAACCGTATTGT 798 32 93.8 36 ..........C.A................... TTTATCCGGAGCACAAGAAATTTCAAACGATAATTC 730 32 90.6 0 ..........C.A.........A......... | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 99.5 35 GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Left flank : CGTAAAGCATTTAACTGGCCGAAGCCAAAGAATTCCGAAAAAATAAACGTAGAACAGACGGCAGCAACGGAAATTGAGGACATAAAGAAGCAGTACGATTTGCAGAATTATCGGGTGTGCGTTAACCTGGACAGCAAGAGCGGGGAAAAAGAAGAAATCTCGCTGCTTTCTCTAACGTTTCAACTAAATCAGCTTTTGATGCTGATTAATAACCCGATGTTATTCCCACATAAAGCCTATGTAGATATGTTTAACGAGCGGTATACGAAGGAGTAGCCTTGGAGCATGAACCGGGAAGTAATCGTTCTCTAGCAAAACGGAATATAGTGGCGGTGCGAACCCCAAGCTCACATAAAAATCCCGGGACATTCGCACCTCTCGCCCAGCGCGGGATTTCGGGATTTTACGTCAATACTTACCCCATTTATTAACCATAAAAAAGGGGATTCGCACTAAAGCGTTTTCAAACCCTTGCTGGATGCGGGGTTGAAATGATCGCG # Right flank : AATTTTACGCTGCTCATTTCTTCCATTTTGTGTCGCTCCCTACGAGGGGCTAGAATGGGATTTACTTTCCCAAGAAAGAAAAAAGACTCGCTAACTGGGTACGTAAGAACGAGCCCATAGGTTAATTTTGTACACATGAAGGAGAACCAGCTCACCTACTGTCCAAAAATTCTGAAGAGAATTTCTGGACAGTGAGCCCTTTTACATAAAAATAAGGAATTGCATTTTCGTATAAATTTAAAAAGAAGAACTACGAGTCTGCCTAAAAATCGATGCTTGACTGACGGGTTAGCCTCGAATGATCGATCCATCCGAAATATTTTCTACGCTAACGGTTGTCAGCGCGCCTATTCGGCCGAAAATCGGGGGGTTTCTTTTCTAAGGGTTGTATATGCACTAGCGTTGCAAGAACACTAACATCAATTTTCAGCAAAACCCACATTTGGATTATTGAAACTATAAATGGATTTTTTTACAGTCATTTTTTAAGCTTAAGACCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12195-11964 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGMM01000036.1 Paenibacillus macerans strain JCM 17693 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 12194 32 100.0 35 ................................ GAGTAGGGTTTCCGCACATTACAGCTTATTGAATT 12127 32 100.0 33 ................................ ATCCATACTGAATGCACCGAGAAAGTCTGTATA 12062 32 96.9 35 .............T.................. GCCGACGGTCGCATATGTATGCCCATCCCCAAGCG 11995 32 93.8 0 .............T..........C....... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 97.7 35 GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Left flank : CATGGTAGCACCTCGAATTTGGATAGATTCATTTTACCCGATTCTCGGTTCTCCATGTCTACTTTTTAGTCTAGCAGCAAT # Right flank : ATGTAAAATCAATACCAAGTTGCCCCTTAAGATAACGCCACTCTCAAGCCTCAGCGTTCCTCTCTGCACGAGAGGGTGGAATGAAAGAAGGTCTGATTCTTTGCGATTACCAGGATCAATAGCCACTTCCCACATAGGAGTATCTTAATGAAAATTGCCTTTGGTTAAAGGCTTTTTTTGTACACTCAAGGAATGTGGAAATGTTCGCGTGTTTAATGTGGAGTGATTTTAGAGTGAAGCCCCCTCCTTATCAATTGCCTAGATGATTACTCCTTCGCTTAGAGAGAGGAGATAGATAAAGTTAAGGGAGGTTATGGAATTAACGGATTTATAAACGGCAAACCGGCCTTTTAGATGAATTGAGCCCAATCCACGATTAGACAAATTATTGAGCTCCTCCCTCGCGGGGGGAGTTTTTTGCTTAACTTGGAAATCACTGTAGAAATCCGCCCACAAAGGCAATCACAACCCTCAGATTCGTTTCTCACTCTTGCTTTAAG # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGCGGGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //