Array 1 55865-56869 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDYH01000010.1 Finegoldia magna strain 09T408 2c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55865 29 100.0 32 ............................. ATTACCAAGAACAGTTGAAAAAATTGTATGAT 55926 29 100.0 32 ............................. GCACGTTTACGGCTCACTGTATGTTGGTAGTA 55987 29 100.0 32 ............................. AAAGAAAAGTAAAAGTTGAGTAAAGTTGAGTA 56048 29 100.0 32 ............................. ATCATTACTTATTTCCATAAGCCTATTAATTC 56109 29 100.0 32 ............................. GATATATTGTTTATGTCATGAAGTCCGTCATT 56170 29 100.0 32 ............................. GTATAAGTTTTATCTGTAACTAAATTATCTAC 56231 29 100.0 32 ............................. GTATAAGTTTTATCTGTAACTAAATTATCTAC 56292 29 100.0 32 ............................. GTATAAGTTTTATCTGTAACTAAATTATCTAC 56353 29 100.0 32 ............................. GTATAAGTTTTATCTGTAACTAAATTATCTAC 56414 29 100.0 32 ............................. ACTTTTAGAAACTGATGTACTAATTTTATCGC 56475 29 100.0 32 ............................. GTATAAGTTTTATCTGTAACTAAATTATCTAC 56536 29 100.0 32 ............................. ACTTTTAGAAACTGATGTACTAATTTTATCGC 56597 29 100.0 32 ............................. GTATAAGTTTTATCTGTAACTAAATTATCTAC 56658 29 100.0 32 ............................. ACTTTTAGAAACTGATGTACTAATTTTATCGC 56719 29 100.0 32 ............................. TCATTAGATCATTTTACACGAATTTTTACAGA 56780 29 96.6 32 ............................C TGATAACCAAAATAAGAAGTCGCAAAATCAAC 56841 29 89.7 0 .......................A..AT. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTTATACCCGCACACGCGGGGATGATCCT # Left flank : GGGCCATAAGAACTGGCAAAGATAGCAAGGAATACTCTACACTAATAAGGCAGGAAATAAATATTCCACAAAAAATAAGAGACTTAACTGGAATAAGCGATGAAGATATAAAAAAAGGAAAAACAGAAGAAACGGCCATAAATGAAATTATGGACTTCATAGGAGAAGATATGCTAGTAGGCTATAACATAAATTTTGACATTAAATTTATAAATGAGGCTTTGAAGAGACAGGAAAAGCCAAAAGTAAAAAACATGACATATGACGTCATGAAATATGTAAAAAATGATAATTTGTTTCTAAAAAATTATAAGCTAGAAACTGTGACCGAAGAATATGGAATAAAAGAAAAAGTGCCTCATAGGGCACTAGAAGATGTTATGATAATTCAAAAACTAATAGCAAAACTAGACAAGCTTAATAAAACACTAAAAAATTAAAGTGAATGAAACTCATTAGAAACAAGATTTAAATTGGCAAAATAACAAGATCTTTTTAAT # Right flank : TTACCTTAATTGGAAGAATAAGGTAAAAAAAATGAGTACACTTATTTATTTCTAAAACAGGAAATACTTCAATAATAAGGATAAATATGCTCATGGATATAAATTTAATACATCAAAGATGAATAGACAAAAAATATTGTTACCAATTAATGATTCAAGAGATTTGAATTTTGATTACATGAAAAAATATATGCAAATTAAAGAAATAAAAGAGCAATATAAAGTTTATAATACTATTATAAAATACTTAGATAATTATAATTAGAATTTAAAAATTAAATGTAAAATTAAAAAGATGTTAATTTTTCTCCGGTACTGGAAATACAACGTGTCTAAAAATTTGAAAATGTCCTAAAATTAGCTGGATTTAGTGATAATCTAAAAAAATTATCTAGTATTTTGAATGGTTTGGATATATCGGACGTTTGGAAAAGAAGAGTGGGAATAAATTTGTGGTAAAAATGGCGAACTAGGATTGTTTCGAATAAACCTCATTGCGG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCCGCACACGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 25488-26649 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDYH01000004.1 Finegoldia magna strain 09T408 14c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 25488 36 100.0 30 .................................... AAAATAACATTGAACAGTTTATACAAGCAA 25554 36 100.0 30 .................................... ATTCAATTTTGAATATCCTTCTTCCGTGAT 25620 36 100.0 30 .................................... AACATCATATCCGAGAAGTAATATGGAATA 25686 36 100.0 30 .................................... GCGTATTGAAATATCATTCCACTGTATATG 25752 36 100.0 30 .................................... ATCATCGCTTTACTCAGAAAAATTATTTTG 25818 36 100.0 31 .................................... TTCTTGAGTTTCTATTTGCTCATAATCAGAA 25885 36 100.0 31 .................................... ATGATACGCTGAAATGGATAGCTCAGATAGG 25952 36 100.0 30 .................................... CTGTAGACTTGAAGAATCCCATACAGGATA 26018 36 100.0 30 .................................... TAATCAAACGATTAAAGAAAAAAGAGATAA 26084 36 100.0 30 .................................... TCTTTTGTGTCTTCTATCTCTTCACCAAGA 26150 36 100.0 31 .................................... AGGATATATATCCCCTATCGACTTTATCAAG 26217 36 100.0 30 .................................... AATCATAGCAAGTCTTTTAGTCTTAGTAGT 26283 36 100.0 30 .................................... GATATTGGAGATATTGAGGACAAGGAATAT 26349 36 100.0 30 .................................... AATGCTACAAAAGATAATGGTCAAAGAGTA 26415 36 100.0 30 .................................... TTATAGGATAAAGTATTTGGGTTAAATTGA 26481 36 94.4 30 .................A...........T...... AAAAGACGGGCAAGGACTTATCACATACGA 26547 36 100.0 31 .................................... AATGGTTATAGAGATTTCAAAAAAGTTACCG 26614 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.7 30 GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Left flank : ACAAGAAAATCACTACAAAAATTATAAAAGATTTAATAGGAATTATCTCAGATGAAAAACATTACGAACAAAAAATAAATTTAAACTCATCAATTGTTAATTTTATTAACGACATTACACTAGATTATCCGTATATGTTAGAAATCGGTGATGAAATAAATTTTGAATCACTATTAAAAGTAGTACCAATTAAACCAAGCATAGATTACACAGACTTTCTGGATAAATTTGTTTCTTATTTAGACATATACCAAAATGTTTTGAATATAGATGTATTCTACACAATAAATTTATTGCAGTATTTTACAGAAGAAGAGCTCAAAGAATTATCGGATTACATTAAAATTAAGAACATTTGCATAATAAATTATGATAATATATTAGTAGATAGCAAGTACATTTCCAAAAAATTGCTGTTCGATAATGATTTATGCAGAGTTTTATAAATGTCTGTATGAAATTACCGCTTTGATGGAGTGATTCTACCTCATGGATTTGAG # Right flank : CGACAATTTAGTAAATAAAAAAAACAGCAGAGTTTGAGAATGATATAATTATAGCGATTAAGAGGTCAAAGAGGTGCTTTGTATGAATAACAAAAACAACATAGATAGAGTTCATGATGATGTTTTTAATAGCATAAAAATATTGATGGAGAAGGCAAGAAATGAAGTTGCAAGAGAAGTCAATAATATTTTGGTGCAAACTTACTGGGAGATTGGACGCATCATTGTAGAAGATGAGCAAGGTCATTCAGAAAGAGCAGAGTATGGTAAAGAGCTTATAAATGACTTATCTAGACAACTTACAAAGGAGTATGGTAAAGGATTTTCTAAGTCTAATTTATTTAATATGAGAAACCTATATTTATCATATCCAATATTCCAGACACTGTCTGGAAAATTGACATGGTCTCATTATTGTGAGCTTTTATCCATTAGCGATGAAAAAAAAAGAAGTTTTTATGAAAAAGAAAGTATCAACGCAAATTGGTCGGTAAGAGAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 8035-8848 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDYH01000030.1 Finegoldia magna strain 09T408 8c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8035 30 90.0 34 ............T.C...T........... GATTGTTTTTATCATAGACTTAACCCTCTGCGTT 8099 30 93.3 38 ..............C...T........... GAAAAAAGCGACGAAGTAACAATTGAAACCTTGATGAC 8167 30 93.3 35 ..............C...T........... AGCAGTAATAGGAGTTTACAAGCTGGTATTATCAA 8232 30 93.3 35 ..............C...T........... ACAATAGCTTTCGTTTCTGTTGCTTTTTCAAGAAC 8297 30 100.0 35 .............................. TTATCTTCTGATTCTTCTTGTTCTTTTTTATCATC 8362 30 100.0 34 .............................. TTTCTACGAACTCCTTGCTCGCCTTGTCATACGC 8426 30 100.0 37 .............................. GTAATTTAGATATTGATGTAAAAAACATTGTTGTAAT 8493 30 96.7 34 ..................T........... TATCTAGATACATATCTAATATATATAATTCTTT 8557 30 96.7 36 ..................T........... TAAAGAAGAATTAAGACGTGCCGAAGTATCAGGTCA 8623 30 90.0 36 ..............C..AT........... GAACTCAGGTGGTATTACTTTATTTAAAGAAAAGGT 8689 30 100.0 34 .............................. TAAGACAACAACCAACACTCGAAGTCGGAGAAAT 8753 30 100.0 36 .............................. CGGGTAAAGTGAGGAGTCTGCAAAGTCTGCTTTGTT 8819 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 96.2 35 ATTTACATTCCACTATGGGTAGATTTTAAT # Left flank : TGACAAAGATGAAAGCTAAATATATAAGAGAAAATTGGGGTATATCTCTAACTAAAAACAAAATTTACGAAGCATTAGGACATGAAGGTGAATTTATAAGAATTATTGATGATACTGATGAAGATTATTTGTACGATCCAGGTGATTTTGAAATAATAGAAGATGACGATATCCAGAAACGTACTGAGTTTTAATTCATGATTAACAGGTCTATATAATCTAAAGTTTCAACTGATTTAATTCTGACATATAAAAACAAAAATATCATGTCCTACTCTCATTTCCAATCCGTCTTCTTAAACTTCATAACTATTTTTTGCGCAATAGTAGGCATATATTCATCATATCTATTTCTATTTACATTTATTGTGTTCAATATATCGTGTTGTACTCCAATAATTCTATATCCCAACCTTTTTTATTGTATATTAAGGTTAAATGCATTCACCATGATTAGATTTAAATAATAGTATAACTGATAATTCATCACTCTAAGCACG # Right flank : TAGGTATCTGTCTGTAAGTGTATTTTCAACGCTTACAGACCTTGTTTCTGTCTATGTTCTCTCTTAGTATATCAAATTTGATAATTTTTTGAAAATAATACGGTTACACATTACATAATGTGTGATTTTAGCCGTTGTCGATGTCCTTGTAATTCATACTTACACCGCTTCGACAATTGGTTTATATGAATTGTGGATCGTCAATTTCCGTTCCAAGTATATCTTTTTCAAGCCATCTTTCGTTTCGACTTTTGAATATTATTACTGAATCTATTGTCTCATCGATTTCTTTTTGAATTTTCTTTTTCAACTTAAACAAGTCTGATTCTAAAATTTCTCCTTCAAATACGGAGTTTTGAATATGATTTAAGTATTGTTTGCATATCTTGAATACTCTGTTCCATCTTCTTTGTCCATTATTATCTTTTGAGATATCATACACTAAAATTATATACATTTTACCACCAAATTATAAACGGTTCGTATTCTTTTTCTCCAAT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCACTATGGGTAGATTTTAAT # Alternate repeat : ATTTACATTCCACTCTGGTTAGATTTTAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //