Array 1 357922-358909 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087380.1 Pasteurella multocida strain IMT47951 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 357922 28 100.0 32 ............................ ACTACAGACGCACTACGATGATATCCTGTCTG 357982 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 358042 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 358102 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 358162 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 358222 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 358282 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 358342 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 358402 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 358462 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 358522 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 358582 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 358642 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 358702 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 358762 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 358822 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 358882 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1586431-1583161 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087380.1 Pasteurella multocida strain IMT47951 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1586430 28 100.0 32 ............................ ATCGTGCCGCAATTGGCATTTAATTAAAGAAC 1586370 28 100.0 32 ............................ GTGCACTGTAAAATCATAATCTAGTTCGTAGT 1586310 28 100.0 32 ............................ GCAGTTGACTCAACCTCGACAATGAATGCGTT 1586250 28 100.0 32 ............................ ACGAGTTCATGTGTGTTCTTATCGAAGTGTTC 1586190 28 100.0 32 ............................ ATTTCAGTTTCCCCTGTGTGTGTTGTTGTTAA 1586130 28 100.0 32 ............................ AACTATCCCGTATCACTAAAGATAGAGGAGCA 1586070 28 100.0 33 ............................ CGATATTGAAGGGGTGAATGGTATTAAGCAGCT 1586009 28 100.0 32 ............................ AGTGACATACTACCCCCTACAACTTCTTCTTC 1585949 28 100.0 32 ............................ TGTGTGTTGTTGTTGTTAATCTTATGATAAGC 1585889 28 100.0 32 ............................ GAGAGTGGGACACTACATAGAGCTAACAAAAG 1585829 28 100.0 32 ............................ TTAGTTACTCATCTAGTCAGACCTCAGACCCA 1585769 28 100.0 32 ............................ AATAGCCTCCTCCATGATTGTCGTTCTTAGTG 1585709 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 1585649 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 1585589 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 1585529 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 1585469 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 1585409 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 1585349 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 1585289 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 1585229 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 1585169 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 1585109 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 1585049 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 1584989 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 1584929 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 1584869 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 1584809 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 1584749 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 1584688 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 1584628 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 1584568 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 1584508 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 1584448 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 1584388 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 1584328 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 1584268 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 1584208 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 1584148 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 1584087 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 1584027 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 1583967 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 1583907 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 1583847 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 1583787 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 1583727 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 1583667 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 1583607 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 1583547 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1583487 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1583427 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1583367 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1583307 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1583247 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1583187 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //