Array 1 119194-120474 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLD01000021.1 Haloferax sp. ATCC BAA-646 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 119194 30 100.0 35 .............................. GAGGAGCTTGTCCTTGATGTAGAGTCCCGCGCCGG 119259 30 100.0 37 .............................. GACGCGTGCGTGGCCGATGTCGAAGACTGGGACAATA 119326 30 100.0 35 .............................. CGCTTTGAAAATAGCTACCGGCGGCCACCACGCGC 119391 30 100.0 35 .............................. TTCGGCATTAGTCGCCGCCCCCACAGTCAACGTCA 119456 30 100.0 35 .............................. GCCGTACTTTGCCGCCTCGGCCGACAGCGTCACCA 119521 30 100.0 35 .............................. ATTCGGGATGGAACTGGACACCTCGGGGCTTTCAC 119586 30 100.0 34 .............................. TCTGTGCCGAGAGCAGTATTTACATTCCGAGAGT 119650 30 100.0 34 .............................. CTGCAGCTCGTTGAACAGTTCTATACGGCCGCCC 119714 30 100.0 37 .............................. GATCGCGGCAACACGCCAATCGGGAACTACCTCGACA 119781 30 100.0 36 .............................. TATTTCTTCGCCGTACTGTTCATCTTCCTCGCGGGT 119847 30 100.0 38 .............................. TTTTTTACTGCATCAGAACCGTAGGTCGGGTGAACGTT 119915 30 100.0 38 .............................. GGACAGCCCATGCGCCCACACCCAGCCGGGCGGTCCGA 119983 30 100.0 36 .............................. GGCTTCGTCAAGAGACGGAACACGATGTTGACGCGT 120049 30 100.0 35 .............................. CACGGCGGCCGTCTCGGTCACGTACAATAGTCAAT 120114 30 100.0 36 .............................. GACTCGGCAGAGGAGGCGTTCGAGCGCGAGGCTGGC 120180 30 100.0 36 .............................. AGCTTGACGCGGACGCCGACCTGGTAGTCGTCGCCC 120246 30 100.0 36 .............................. GGCCATGTGTCGGTGTCCGGGTCGTACTGCCGGAGT 120312 30 100.0 38 .............................. AGCGTCGAGTTGGCGGCCGAGATGACCGCGGTGCCGGC 120380 30 100.0 35 .............................. ACGAGCTCGAAGACGAGCAGTCAGCCCCGGACACC 120445 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 100.0 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TCGTCGTCGGCACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGTGACGTCCACACCTACGGCGGCCGCTCCACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTACTCGACTCCGCGTGCGAGCGTCCGTACTTCGACGCCGCCGAAATTCGTCGCCTCCAACGCGAGGAACGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAACTCTGGGTCCGCAAGTATATCGACCGCGAAGATCGCGGCGTCGAGGAGGGTTCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGAGATTCGTTTCCGTCGACCCCCGGGGGAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACG # Right flank : CAGAGAAAACCATCCAACGAAAACAATCACCCGAACAGTCAATTCTAATTTCAATTATTGCGGACCCGTCAAATGACGGGAATAACTTTATGTCGAGTAGCCAACAACCGTGGAGACAGCAATGAGTACACAAGGAGGCGTCGGGTAACGGTGCGGATTATGGCTCACTTATCAGCGCGTTCCGACGCCGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGAATCTGGAACGCGCTCGACGGGACGGTCTACGGAGAACGACACGATTCCGGCGAGCCGCCGGGATTCGCCTACTCGAATCCGTTTCCGCCTCGAAATATGCGGGAAGGTGACGACCGGAAGTTGCTGGTCGCGTCTCCCGACGAGGAACTACTCGCGAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAGGTAACATCCCTCGAACCCGACGTGGGCGAGCCAGGGACCAGGGGGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 130013-132149 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLD01000021.1 Haloferax sp. ATCC BAA-646 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 130013 30 100.0 34 .............................. ATGTTGACTCCTTCCTTGAAGTCCTCGGGAACCG 130077 30 100.0 36 .............................. AATTTCGATGTCTTCTATGGCACTTGCCATACAAGT 130143 30 100.0 34 .............................. TACACACGACCATGTCACTAACCACAGAGCCGGA 130207 30 100.0 36 .............................. CCTGCCTGTTTGAACGGTCGGTGTAGCCCGTGTTGT 130273 30 100.0 37 .............................. AGTCGCGGGGTTCTGACCGATGATACTGCCGATGGCC 130340 30 100.0 34 .............................. GGCTACTCTGCCTCGCTCGGGTGTTCGAGCGAGT 130404 30 100.0 37 .............................. GGGAAGTGCCGTGAGGTAGAGTTGCGTAGTCATGGTC 130471 30 100.0 35 .............................. CACCACCTCGGGGTTATGGTCGGCAAGGACGAGTC 130536 30 100.0 37 .............................. TCGTCGTACTCACCGAGAACTCTGACGACCCGCCCGC 130603 30 100.0 36 .............................. GGCTACCATCGACAAGTTAGAGGAAGACCATGACTG 130669 30 100.0 36 .............................. GCCTATTTTTCGCCGCCGATTAGACATACTGGTCCA 130735 30 100.0 38 .............................. GCTCAGTACGGTGTGAGCACTTCCGAGAATCGACTACT 130803 30 100.0 35 .............................. GAAGTAACCTCTACTCCGCTGTTTCTACACCCCCA 130868 30 100.0 34 .............................. CGGTGGATGTACCTCCACGGCGGCCTGCTCTCGT 130932 30 100.0 35 .............................. GTCCCCATGAGGCCCTCCCCGGTCTCGCCTTGGTA 130997 30 100.0 37 .............................. ATGGCGTCCTCTCTCGCGTCGAGGAACACGAAAAGCA 131064 30 100.0 36 .............................. AACTTTGAGGGGGAATTCCCCGAAGACCCCGGAACC 131130 30 100.0 36 .............................. CCCGCGTCCAGCGTCTCCCCAATATTTGTAAACCGT 131196 30 100.0 35 .............................. TCCCCCCGACGAGACGCGGGCGCGAATGTCGTAGC 131261 30 100.0 37 .............................. AGCGCGGTTGCACTGTCCCTCTAACCACACGACACGG 131328 30 100.0 37 .............................. GACCGAACGGTCGTCCATGGTCGCGGTTGCTTTTACC 131395 30 100.0 35 .............................. ATTGTCAATCCGGATTGAGTCGTGTGCCGCAAGCG 131460 30 100.0 36 .............................. TCTGGGCCGTTGTTGCTGCATCGGAGTCGTTGACGT 131526 30 100.0 37 .............................. GGGAACATCGAAGAACCGGGCAGTCGGACGCTTCCCT 131593 30 100.0 38 .............................. TGCGACTGCACCGAAGACCCGTCGCGGGCAGTCATCTC 131661 30 100.0 37 .............................. GCGTGGGTCCGGAGAGTCGCCTCGCCGCGGCTCTCCA 131728 30 100.0 35 .............................. TGACACGCCTGTTGCGACCTGTGCGGACAGGTAGC 131793 30 100.0 35 .............................. CGCGCAACCCTCTCGCGGCTCGACTCGGACGACTC 131858 30 100.0 37 .............................. TCTCGTCGACGAGCTCTGTTTTTCCACCCTTCCACCA 131925 30 100.0 36 .............................. GACTCTAACCTCTGCGACGGCTTGTTTGAGGGCCTG 131991 30 96.7 35 ...........G.................. ATCAAGCGCCACATCGACCGGCAGGGGACAGACGT 132056 30 100.0 34 .............................. GAGTCTTTCGCTGTTTTCTTGGCTTCTTCATTGT 132120 30 80.0 0 ...........G...G...G..A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 99.3 36 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTTGAGCGTACCGTCGACCATCCGAAACTCAATCGCAAGGTGAGCTACCAGTACCTGATGCGACTCGAAGCGTACAAACTGAAGAAGCATCTGTTGGCCGGCGAAGAGTACGAACCCTTCGAACGGTGGTGGTAAGATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTTGGGCGGCGCTATCTGACGCACGTTCAGAACTCCGTGCTCGAAGGCGAGATTTCAGAAGGTGACTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATCATCTACGAACTGTCCTCGGATACACTTCTCGACCGCTCGGTCTACGGCGATGACCCGACCGACGAGAAACGCTTCCTCTGACTTCCGTCGACCCCCCGGTCGACTCGGGTTACTGAAGGTCGACGGAACTTCTTTATCATAGTCTTCCTTCAGAGGGTCTGTGTCCGTGATATCGGGCATG # Right flank : CGGAGAGTCATTAAGACGAAAGCGCGTGAAAGAAACAGACACGGGCGCTACGCCGCCTCGGCGTACATCGCCACCAACTCGTCCGCGTTCGACTGCCACGAGTAGCGCGCTTCGATGACCGCCCGGTTCGTCCGACCCATGCGGACGGCCTCCGTGGGGTCGGAGACGAGTCGGGCGAGCGCGCGAGCCAGTTCCTCGGCGTCGCCGGGCGTGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTCCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATCGGAAGCCCCTCCGCGTAGGTCGGGAGGACGAACACGGTCCCGCGGCTGATGAGGTCGCGCTTGTCTTCCTCGGAGAGAAATCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACTTCGAAGTCGAGGCCGGGCGTGGATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 42607-47106 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLD01000032.1 Haloferax sp. ATCC BAA-646 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 42607 30 100.0 37 .............................. GGACCACAGTCGTTCGATACGGTCGTGTTCGACCCAC 42674 30 100.0 37 .............................. CGGTGGACGACTGTCTGGCCGGGTTCGAGCGCCTCGA 42741 30 100.0 36 .............................. GACTTGTCCGAACGGCATCGTCCCGAGGCAATGCTC 42807 30 100.0 37 .............................. GGACAGTCGCGCTTTGTGCGGCCTCTTCGCGCTCGTA 42874 30 100.0 38 .............................. AACGTCAGCATACCCGTCCCCTGACCTTTGATTATATC 42942 30 100.0 35 .............................. TTGCGGTCCCAGTTCTTCAGTCATGGTCTTCCTCT 43007 30 100.0 35 .............................. TGGATATGTTCGAGGGCAAATCCCCACGTTCGGGC 43072 30 100.0 35 .............................. ACTGTCCCCACTTACCAGAGAGAACCCGAGAGATC 43137 30 100.0 36 .............................. CCCATCTCGTGACCCGAGTCGTCCCACCCGCCGAAC 43203 30 100.0 37 .............................. CATCACCTCGGGGTTATGGTCGGCAAGGACGAGTCGG 43270 30 100.0 35 .............................. GATGACTACTGCCTCGCTCATCTCCCCGGACCCCG 43335 30 100.0 37 .............................. TCGAAGGTGCGGGATTCGGCGGCGGCGAAAAGACACT 43402 30 100.0 35 .............................. CAGCCAGTCGTCGTCTGCGTTTTCGGTGTGCTTGA 43467 30 100.0 38 .............................. GTCCTGCTCGACGAGAACGGGTCGCCGGTCGACCACCG 43535 30 100.0 33 .............................. AAGGACCACGTCGGATGGGTCGGTGACACGCCC 43598 30 100.0 33 .............................. TCGTGCCACGTAAGCGTCATCGTCGCACCTCGG 43661 30 100.0 36 .............................. GACGAACGTGTCAAGCACGCAGTTCAAGAACGAATC 43727 30 100.0 36 .............................. AACCTCTTGGACCTCACAGAGGGGACCGCAACGATT 43793 30 100.0 35 .............................. AGTCCCCGATAGTGACCCGGCAAACCCACCGGAAT 43858 30 100.0 37 .............................. CTTCTTTCTTGAGACCGAAAATAGCGGTCTGACGGCG 43925 30 100.0 35 .............................. GGCCGTTTCGTCTCCAGCGTCGAGGTCGGACAGTA 43990 30 100.0 38 .............................. TCCGTCCAACAGTACCCGCTCGGCGTCGTGTAAGAACC 44058 30 100.0 33 .............................. GTTAGTGTTGGCCCCCGACCGGACGAAAGGCGG 44121 30 100.0 35 .............................. GATGACGATGTCGACCGATCCAGAGGTCTCGAACT 44186 30 100.0 35 .............................. ACGGGGAGGAACCCGACTCTTCGGGCCACAACCCA 44251 30 100.0 35 .............................. CCCAGATCGTTGAGACAGAGAACGCGAGAGTGCCA 44316 30 100.0 37 .............................. GACCAGGAGTGGCTTGAGGAGGCCGACGACGACCACC 44383 23 73.3 0 ......................N------- - Deletion [44399] 44406 30 100.0 37 .............................. GACCAGGAGTGGCTTGAGGAGGCCGACGACGACCACC 44473 30 100.0 39 .............................. AACTCGTCGCCTACGACGGGGAGGCGGTCGAGATAGAGA 44542 30 100.0 34 .............................. CGTCCTGCTTTTCGCCCTCCTCACGGGATGTCGC 44606 26 86.7 0 ..........................---- - Deletion [44628] 44632 30 83.3 34 AAGCN......................... CGTCCTGCTTTTCGCCCTCCTCACGGGATGTCGC 44696 30 100.0 34 .............................. CCGATGCGGTCGCGTTGGGTGTTCGTCGTGCCGG 44760 30 100.0 38 .............................. CATCGGTTGAAGGGTAGCCCGCATCCTCGCCCCGCACC 44828 30 100.0 38 .............................. GAGCACAGACACCCCCACCGACGGCAACGGCGGCAACG 44896 30 100.0 37 .............................. TGGTCGGCCTCGGTGAAGATCGCGTCCGTCGAGAACG 44963 30 100.0 37 .............................. GTCTTCGCGTTCCTGCTGGTCGCGACCGCGGCCACCA 45030 30 100.0 35 .............................. ATGCTGGTGTCGGCTTCCATGCGCTGACCGCGGAG 45095 30 100.0 36 .............................. GGCAGTTCTGCAAAGTCTGTCCGATATCGTCAACCC 45161 30 100.0 34 .............................. CTCCGCCTGCGGGTGACGGAGGCCGCGTCTGCCG 45225 30 100.0 32 .............................. GAGGTCAAACACGACGCGACCATCGAACAAGT 45287 30 100.0 35 .............................. ATTTCGGAGCACCCGCATCGCAGTCTCGCCGTCCT 45352 30 100.0 36 .............................. GCGTTGGTTAAGACCGCGAGGGCGGTCGAGAGTGTT 45418 30 100.0 37 .............................. GGGCCAGAAGACCCCGACGTGTTGGCGCACGCCAGGG 45485 30 100.0 37 .............................. AGCACCTCGAGGGAGAGGAGGCCGAGGCCTCCAGAGA 45552 30 100.0 32 .............................. GTCCGTACTAACCGGGTCGATATCGCCGGATT 45614 30 100.0 36 .............................. GAAGAGCGCCTCGAATCCGCGTCGAACGCGGGGAGC 45680 30 100.0 35 .............................. CTCTGCGGACTCGACAAGGTCGTCAATCGGGACAT 45745 30 100.0 37 .............................. CGAACCGGGCCGGACGCGCCGGCCAACACGAGAGCGC 45812 30 100.0 38 .............................. GTCGTACATGGCCTCGAAGAAGTCGAAAGGGAACGTCG 45880 30 100.0 37 .............................. TTTACTCATTTAGAATGCACCCGAGTTGTAAAGGCCG 45947 30 100.0 37 .............................. GGCATCCTGATTCGAGGAGTTGCGCCTCGCTCGCGAC 46014 30 100.0 38 .............................. GGTTTGCGAGACTACGGTGAAGACGACCAAATCGGCCT 46082 30 100.0 35 .............................. GACCCGGACATCGTGGCCGATGTGTTTGACCTCCG 46147 30 100.0 35 .............................. GACGACCCCGAATGGGACGGGAGCGCGGCAACGTC 46212 30 100.0 35 .............................. TTCGTCTCGGAGCCCGTCGAGGAAGGCGAGCGCGT 46277 30 100.0 36 .............................. CATCTCGCACAACGGCAATGCAGTCTCTGTTGAGGG 46343 30 100.0 35 .............................. GTCTGGCAAGTCGCCGTATGACACCATCCAGTCGC 46408 30 100.0 38 .............................. CGCTGAGAACGTCAATCTCTCACAGGGTTGGGCTAAAC 46476 30 100.0 37 .............................. ATGGGGGCGATATCATCCATGTACTCTCCCGGTCCTG 46543 30 100.0 37 .............................. ATTGTCCCAGAACCCACCCACCGTTTTTAGCAGAGTG 46610 30 100.0 37 .............................. ATCCGTGGTTCACCATATTGGCAATACGTGACTGTGG 46677 30 100.0 37 .............................. TGAAAAAGAACACCCCCTACTCGGCGTTTTTAAACAA 46744 30 100.0 37 .............................. GTGATGAAGATGAGCTCGTTCGCCGGCGCGTTGTCGA 46811 30 100.0 37 .............................. AACCCAAAGCACGACGACGGCGTTGTCGGGTCGACTG 46878 30 100.0 36 .............................. GGGAATGACACCGAGACGATCATCGCACTCCCGGCA 46944 30 100.0 36 .............................. GTGACCGGCCTCACCCGCGGCGCGCTTCTCGGAGGT 47010 30 100.0 37 .............................. CGCTGGCGGCTCAGTGCCGGCTGTCTCGAAGTCGACG 47077 30 80.0 0 .......CA.A.........A.AG...... | ========== ====== ====== ====== ============================== ======================================= ================== 70 30 98.9 35 GTTTCAGACGCACCCTTGTGGGGTTGAAGC # Left flank : ACTGCCTTCGACCGTGCACAGGGTAAGAAGCTCAGGAACGAGTCGGTCGTCAGTCAGGACTACCCAACACAGGACGTGTTCGTCTTGGTCTCCGGAAACGACATGGAGGCACACGACGCGTACGCGCGTCACCGGAAAGACGAGAAGTGGTCAAGCGCTCGGTCGGCGTTCCACTCGCTCAAGCCGACTCTCGTTTCCGTCCCCGTGGACGAAGAGTCGGACGAGAAAACTCCTCTCGTGATTCGCGTTGACGAGGATAGCCAAGACTACGATCTCGAAACCGGAGGGGGTGTGGACCTCAGCGGTCGAATCGACGCGTTGGAGAAGTGACCTGCAAGCATCCTTCTTTGCCGTGATGATTGCGATAGCAGTACCGACAGAATGGACATCGGTCGTCCTTCTGATGTCGACCCCGGGGGGTTTGGAGGGTATTGAAGGTCGACGGAAACTTTGAGGTGTAGATGGTGTGTATGGGTACTCACGTGGCCGAATCGGCCATG # Right flank : CCTAATAGTGGGGCTCACAGGATGGGCGACTGCTGTGTTTCAATGACCAAACGAGAACCACGAGACGGCGGCGGGAAGACTTTTGCAACGAGCGGGAAACGTCTCGACTGAGATGTCAATCCAGCCGCTCGATGTCCTCGGCGGGGTCATGTTCCTCGCCGGCCTCGCGGTCGTGACCGGCGTGGTCGCGTCCGCGGTCGCCGCGGGTCAGCGCCTCGGCGTCGGTGCTCTGCTCATGGTGCTCGGAACGGCCGCCGTCGCCGGGTCGCGCATGTATCAAAAAGCCCTCGAAGCGACGAACTAACCGGCATCACACCCCGTCAGACCCGTTTTTCTGGCCGTCAGGTCGAATGTGCGGCCGCAGAGGTACCGCCGCTTGGTTCGATACCAGAATCGACAGTCGACGGGCGACTCGCCGGCGTCGACATCGAGTCGGCGGAGAAACACGTCGCGGACCGCGAGGGTGACGACCAGTTCGACCGAGCCGTCCCCCGCACGTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGCACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 140368-137676 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLD01000044.1 Haloferax sp. ATCC BAA-646 contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 140367 30 100.0 37 .............................. AGGTACTGGAGGTAGGTCGACTCGACTCTAGGCACGA 140300 30 100.0 36 .............................. TCGTACTCGCTCTCGGCCGTCACAGTCCCTCTCTGC 140234 30 100.0 36 .............................. CACTCCTTTAGGTGGCGGGCGGCGCGTTGGACACCC 140168 30 100.0 35 .............................. ATTTGACATTGGTGTGTTGCCCCACATATGGGAGA 140103 30 100.0 38 .............................. TTCTCGTAGCTGATGGTGATGCCGTTCGAGTCGTCGCA 140035 30 100.0 37 .............................. GGTCTCCTAAGCCAAGCCAACAGCCGCGCCCTCGAAG 139968 30 100.0 34 .............................. CGCCCCGTCGATGGACAGGAACCACTTGATGAAC 139904 30 100.0 35 .............................. GACTTCGGTCCTCACGTCCGTCGAATACCCCGCCA 139839 30 100.0 35 .............................. CCTAACGACACGGATTACGGGGTCTTCGGTACAGA 139774 30 100.0 36 .............................. GAGTCTGGGACTATCACGTCGGCCATTGGCCCGGGT 139708 30 100.0 35 .............................. ATCGCGTGTACGCCCGGCGGGCGCGCCGCTCGCGG 139643 30 100.0 37 .............................. GTCTACAGCGGCGTTGGTGCCATTGGGCTACTCGGTG 139576 30 100.0 36 .............................. AAAAACGGTTACTCGCCCGAAGGGGCCGAGGCAGTC 139510 30 100.0 33 .............................. CGCGCTCGTAGTCGGAGTCGGGGTCGCGGACGA 139447 30 100.0 36 .............................. CGACGCCGTTGCCGCCCATCGCAACGACGAACTGGT 139381 30 100.0 38 .............................. CGAATCGGTGTTACTCATGCACTCTCACCTGCCCGGAA 139313 30 100.0 38 .............................. GGTCAGGGGGGCGACACTCCGGTTGCCAAATTCACCGT 139245 30 100.0 37 .............................. GCACACTGCGTTAGTGCCGCACCACGTTGATAGACTG 139178 30 100.0 38 .............................. ATATTCGGTACTCTGTGGGCTATCACGTTCAATCTCGT 139110 30 100.0 36 .............................. TCTCTTAGTTCGTCTCTGGACTCCTTCGAGAGTCGG 139044 30 100.0 35 .............................. TGGTGGTTCTTCGGTTAGTCGGTGGTTTGGCGTGT 138979 30 100.0 38 .............................. AGAATAGTCGGTATTAGAGATGGACGAACGAATCCCAC 138911 30 100.0 37 .............................. AGGGTGCAGGTCGCGGACATCGAGCGCCCGAAGCGCC 138844 30 100.0 38 .............................. GCCTCCAGGAGCGCGCGGTGCTCGTCGCTCGCGTTGTC 138776 30 100.0 34 .............................. CGGTTCGACGACGACGCGAGCTTCGCAAACGCCC 138712 30 100.0 30 .............................. GCGCGCCGGGGACGATGGTGTCGAAGTGGT 138647 30 90.0 1 ........................N..C.A A Deletion [138617] 138628 30 83.3 35 .GGATN........................ GAACTGCGCGCCGGGGACGATGGTGTCGAAGTGGT 138563 30 100.0 37 .............................. AGCCAGTGGCTCTCGGAGACGGGCACCGAACGCGTGC 138496 30 100.0 36 .............................. AATGGCTCTCGTTCTCCCCGCGTTAGGACTCACGTC 138430 30 100.0 37 .............................. GGCTTCCCACGGCGTCTGGTTGAGCCGCTCCAAGAGC 138363 30 100.0 36 .............................. CAAGGATGCCGACCGCCCGGACGAGAGGCCACGTAC 138297 30 100.0 35 .............................. CGCTTTACCGCCGACTGCGACAGCGACGCGCCCCG 138232 30 100.0 37 .............................. GTTCCCGCCGCGCTTCAGGAACCACCGGAGCGAATCG 138165 30 100.0 36 .............................. ACCTCCCGCGAGCGCCACTCTGCGACCCCGTGAATC 138099 30 100.0 36 .............................. GAGACTTGTCCGCCGTCGGCGAGCAGGTAGCGGACA 138033 30 100.0 36 .............................. CAGCTAAAACAAATCCGCACGTCGCGCCAAAACCGC 137967 30 100.0 35 .............................. GTGGACTACGGCGACTTGTTCACCTACGACCGCGA 137902 30 100.0 34 .............................. TACAACTTCGCGGCACGTCCGGGGTCGAACGGTG 137838 30 100.0 37 .............................. CGCGAGCGGGAGCGCAGCCGCGACTACGTGGCCGACC 137771 30 100.0 36 .............................. GACACGGAGCTCCGCCGACACCTAACGGAGCCGCCC 137705 30 80.0 0 ...............G.A.C.A.G.....A | ========== ====== ====== ====== ============================== ====================================== ================== 42 30 98.9 35 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CTCGTCGGTGAGTCGCTCACCGACTTCCGAGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAGCCGACCGCGTGACGACTGCCCGAGAGAGTGGTTCTCGACAGTGCCAGTGACGAACCGACGTTTTCGTCGACCCCCCGGGGGTTGCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : ATCAGGCGACGGCATTGCGATGCACGTATTAGTCAATCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTACTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGAGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //