Array 1 6816-8432 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAT01000138.1 Lactobacillus crispatus strain NCK1351 AB50.253181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6816 29 96.6 32 ............................C GTGTTGTTTCCATATTCATTAGATAAAACATC 6877 29 100.0 32 ............................. CTCTTGAAGACCATCTTTTTGGTCCTCAGTCA 6938 29 100.0 32 ............................. AACAATATGACCGCTACTGAATTGTTGAAGCA 6999 29 100.0 32 ............................. TAATGGCTGATGCAACAGCAGTCACACCATTT 7060 29 96.6 32 ............................C GTATAAAAAGCTAATTTGTACGCGTTTTGTTT 7121 29 96.6 32 ............................C ATATCATGTGTTGACCAACCTAAATTTTCCAG 7182 29 100.0 32 ............................. AGTATTTTTTCTGTGCCTCTCTCAAGCACATT 7243 29 100.0 33 ............................. AAGCAAAAAGCTTTAAATATTTTCAATCAAGCT 7305 29 100.0 32 ............................. GGAATCATCAGAAACTAAATCAAAGAATTTTA 7366 29 100.0 32 ............................. ACGTTTTAGGACATTCTAGAGTGACAACTGCA 7427 29 96.6 32 ............................C GCTTGCAGAATCCATTGAAGTCTCAATATCTT 7488 29 96.6 32 ............................C CATTGTCCCCGAACCAGCCTGCCGTACTGTGC 7549 29 100.0 32 ............................. GATTTCTTTAACCGCTTTTTGCAAAATGTCAT 7610 29 100.0 32 ............................. TCGGCCGTTGCTTCAAACGCCCAGAATGAGCA 7671 29 100.0 32 ............................. TCGGCCGTTGCTTCAAACGCCCAGAATGAGCA 7732 29 96.6 32 ............................A TTATTAGCAAGCTATTTATTTTCATGGAGGAG 7793 29 100.0 32 ............................. AGCATTGGTGCAGCAGGTTTATGGCAATTTTA 7854 29 96.6 32 ............................C CTACAATGATGCAAGAATGAGTAGCATGAAAG 7915 29 100.0 32 ............................. AGTCCTTCATAAAGACCACTTACAAAGTCGTC 7976 29 100.0 32 ............................. GTCTTTACATAACTTTGCAATATCTGCATCAG 8037 29 100.0 32 ............................. AGTCCTTCATAAAGACCACTTACAAAGTCGTC 8098 29 100.0 32 ............................. ACTTCCAAAACCAAATTTAATAATTGTGGATG 8159 29 100.0 32 ............................. AGCATTGGTGCAGCAGGTTTATGGCAATTTTA 8220 29 96.6 32 ............................C CTACAATGATGCAAGAATGAGTAGCATGAAAG 8281 29 96.6 32 ............................C ACTGTAATTGAAGATACAAAACTATCGTGGAA 8342 29 96.6 32 ........................C.... ATGCAGAGTGGCGTGCATGTCATGATTACAGG 8403 29 82.8 0 ..G..........A...........AA.A | C [8425] ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.1 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATACTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTCGCTTTGAAAAAAATAGATAATGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4659-4264 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAT01000281.1 Lactobacillus crispatus strain NCK1351 AB53.272007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4658 28 75.0 32 TAT.T.........TGT........... GATGATGGACAGCCGCGGGGTACCCCGTCGGA G [4652] 4597 28 89.3 33 ..............TGT........... TTGTCTGATTCGATCACTACAGCAGAGCTGTCA 4536 28 89.3 33 ..............TGT........... ATGCTCTTAAGGACATGTCGAAGGAAGAAATTG 4475 28 100.0 33 ............................ CGATATTTGGAGTTCCCTCCTTAATTATTTTAA 4414 28 100.0 34 ............................ TTGCATGGTCTTAACGGCTTGGTCAACCTTGTCA 4352 28 100.0 33 ............................ GATTTTGATCGTCAAAAAATGGTACCTAAACTG 4291 28 89.3 0 ....G.........TA............ | ========== ====== ====== ====== ============================ ================================== ================== 7 28 91.8 33 GGATCACCTCCACACTCGTGGAGAATAC # Left flank : CTTGAAGTGAACTTTGATTTGTGGTTTTTTCTTTTGCACTTTGCAATTGGGCTTTCGGCATATTTGTCACCTCTTAGCTCCGATTATCTTAGCCTCCTTTCACTATATACAACACACGCTTTTACGTGTAACGCGAATGATATTTAGAAAAATATGCCAAAAAGGCATCAATCTGGCCGTCTAAAGCCAAATGATGCTTTAATTGTTTTTTCACCAAAATCAATAGCCTAACTTAATGACACTGTTTTTACATAAACTTATTAAATTTATAATTCTTCATATTTTTTGCTCTTTAACTAATTTGTTATCAAAATTGAATACAACGATTAGTAGCTAAGTCCTTCTTACGATTACCAGATTACCAATTCATCTCGATTCTATTTTAGATTTCTTAGCATCTTTTCACTATATAAGTGAACGCAATCTCCGTGCACCATCAACAATATTTTTAAATAATATACAAAAACAGTCACTCTATAGAACATATTTTTCAGAGCAGC # Right flank : TAAATGATCCACAATATATCAGCATCGCTCAATCGAAATAATATCATTTTTAATCACTTTTAACAAAGACCAATAATAAAGCCATAATTACAAAAAGCCACTCCAAATAAAAAAGAAGCATTTCTGCTTCTTTTTGAATAGTTTTGCTCCCAAAGTGCCCCTAGGATTCAAATTTCATTTATAAATCCTTATATATCAAGGTTTAAGGGCTATCCATTAAACGATTTCTTGCTCCTTGAAGCGACCATATACTTTTTCAACTTCACTAACACTCATGAAAGCATACGGATCTGCTCCTTGCACGATTTGGCGAATATCATACATATCATATCGATCAATAATGGTAATCAAAACTGTCTTTTCAATATGACTATATGCACCTTCAGCATCGTGCAAAATAGTGATTCCACGATGCATTCGATTCTGAATTCCATCAATAATATGCTGTGGATGCTGAGTAACAATCATTACTTGCATCTTCTGGTGTTGGGTGTAAACCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACACTCGTGGAGAATAC # Alternate repeat : GGATCACCTCCACATGTGTGGAGAATAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 2488-1075 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAT01000015.1 Lactobacillus crispatus strain NCK1351 AB50.395599, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================= ================== 2487 29 100.0 32 ............................. AGTTCAAATGTTACTTGGCCACGCAAATATAA 2426 29 100.0 32 ............................. TAATACAATAATTTTTGCCTTGAATAAGGTTT 2365 29 96.6 33 ............................T TGTGGATGAGTCACAGCACTCAAGAGCTAAAAC 2303 29 100.0 32 ............................. GTTGATTTAGTCTCTGAGGGCTTCAATGTACC 2242 29 100.0 32 ............................. ATCGTAGACATGGCAATTATGAAATGTATGAA 2181 29 96.6 32 ............................T AATTTGGTCATTACGCCAAACTGTCTTTCTCA 2120 29 96.6 32 ............................T AAGTCAGTTAGTTCACCGGTTACGAAGCCAGT 2059 29 100.0 32 ............................. GTGATCACTACCAGAAAAAATGCGAGAAACAA 1998 29 100.0 32 ............................. GAATCGATTCCAATTCAGTTAACTGGCGATAG 1937 29 100.0 33 ............................. CATCTAAAGTAGCAGAGTTGTCAATCAAATTAG 1875 29 96.6 32 ............................T ATGCTGAGGATCAAGGTCAGGTGTTGCATGAA 1814 29 96.6 32 ............................T ACATTGATTAACTTGCTTAGCAACATCAAGAA 1753 29 100.0 32 ............................. AATGAAATTTTTAATGGCTGATATATTGAGTG 1692 29 96.6 32 ............................T GTTTCTCTAGCTGGTGGTACCAATGGTACTAA 1631 29 96.6 32 ............................T AAAAAAGTAATTGGTGATCCTAAAACGTATTC 1570 29 96.6 32 ............................T AAACGCACAGGCGTATTAGTGGGCGGACACCA 1509 29 100.0 32 ............................. ATGTGGGCAAGGTTCAATTCCTTGCTAGTTCT 1448 29 96.6 32 ............................T CGCTTGGTTACGGGCTAGGCAAAGCAAGCTTT 1387 29 100.0 71 ............................. AGTCTGCAAAGAACTTAGACATTCTCTTGCTTGTATTCTCCAATCATTTTACTTGGTGATGATAAAAACGG 1287 29 93.1 32 ...........AC................ TTGATTTGGAGTCAAGTCGTTTACCATTAACA 1226 29 89.7 32 ...........AC...............T TACAATCCAACTAAGGCACAAATTAAAAAGTA 1165 29 93.1 32 ...........AC................ AATCTAGTTTATGATACAATAAACACAGATAT 1104 29 79.3 0 ...........AC....T......T.A.T | A [1083] ========== ====== ====== ====== ============================= ======================================================================= ================== 23 29 96.7 34 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGTTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCTAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGACAACGCGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGCCTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATATGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //