Array 1 367-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378839.1 Johnsonella ignava ATCC 51276 supercont1.11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 366 30 100.0 35 .............................. AGAGTACAAGTTGAAGTTGAACACTATGAGGTCGT 301 30 100.0 37 .............................. CTTTTCCTGTATTTGAAGCAGTGTCGGCAACATTATC 234 30 100.0 36 .............................. AAAGAGAATACAGCAAAAAACGTATTCGGTGGCTTG 168 30 100.0 37 .............................. AATCCACTATTTTCTTTTTCTTGATCAATATTTATTG 101 30 100.0 37 .............................. TTCTTGTTCCTCTTCAAGGGAACGTCCCCCATCGATT 34 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 37 ATTTACATTCTACTTTAGTTCCTTTAATTC # Left flank : GCCTCAGGTAGTTGTAATAAGCGTTTGGATATATATCAAGGCGTCTGAGAAGCCAGCGGACTCCCAGTTCGTCCTTGTTTTCATCAATGAATCGATAAGCCTCTAATCGATTTCTTTTGCAAAGAATGCCGCTGCTTTTTTTAGGAATAGATTTTCCTTTCGTGCCTCTTCAAGCTCTGCTCGAAGTCGGCGATTTTCTTTCATAAGCTCCAATTCATTTTGGGCAGTTGGATTAGTTAAGGCTTGTTCCCGGCATTCTTTGCTAAATTTTCTACACCATATGGTAATGCTTGATTTGGCAACGCCATATTCAGCAGAAAGGCTTTGTAGTGTACGTCCTTCTTCCAAATGAAGGCGTACAAGTTTTTTCTTAAACTCCGGTTCGTAATGTTGTTGTGACATAATAATTTCTCCTATTTTATAATTATATTTATTAGTCACTCCTGTTACAACTATAGTTTACCACAACAACCACAACAACCAGTACAAAATCATAAATT # Right flank : CTATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTTTAGTTCCTTTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 727-233 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378865.1 Johnsonella ignava ATCC 51276 supercont1.37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 726 30 100.0 35 .............................. AGAGTACAAGTTGAAGTTGAACACTATGAGGTCGT 661 30 100.0 37 .............................. CTTTTCCTGTATTTGAAGCAGTGTCGGCAACATTATC 594 30 100.0 36 .............................. AAAGAGAATACAGCAAAAAACGTATTCGGTGGCTTG 528 30 100.0 37 .............................. AATCCACTATTTTCTTTTTCTTGATCAATATTTATTG 461 30 100.0 37 .............................. TTCTTGTTCCTCTTCAAGGGAACGTCCCCCATCGATT 394 30 100.0 36 .............................. TATAACTGCTGCTATCGCTATCAAAGCAAGTCCCAG 328 30 100.0 36 .............................. GATGTAAAGCTTTTTCATAAGACTAAAGAAGACCCA 262 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.6 36 ATTTACATTCTACTTTAGTTCCTTTAATTC # Left flank : TGTTACAACTATAGTTTACCACAACAACCACAACAACCAGTACAAAATCATAAAT # Right flank : GGAACTGTCAAGATAAGTAGAGTCTTCAAACTCACTAAATTGTTTATGGTTCCTATGCTGCCAGAAGTTGAACCTCCAGCAACTGCTTATACATAACCGGCGGAAGTCCATCCGGGTTTGATGTATATATCCGTTTTTGATTGTAATATATAAATACATACCTGAAGATCATTGTTTTACTTCTTCTCTTTTCATGCGATAGGTTGGAATCCTTGTAAAGGAGTTCCTTCTTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTTTAGTTCCTTTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 255277-254799 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378829.1 Johnsonella ignava ATCC 51276 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 255276 35 97.1 42 T.................................. ATTTTTAAAAACCCCATATTCATCAGCCGTCCACCCAACACA 255199 35 100.0 40 ................................... GCTGCTATTATTAGTTTTGGCATAATTTTACTTTTTATTA 255124 35 100.0 39 ................................... TTTTTATTTGCCTTAACACCAACATCTTCAAGAGAACTT 255050 35 100.0 36 ................................... CTTCCAAAGTATAGTTCAACATAACTGTGGTGTTCC 254979 35 97.1 37 .....................T............. GGTATTTAATAGTTTTTCTACTGCTGACATTTTTTTC 254907 35 94.3 39 .....................TG............ TATGGATGGCATATATACATCAACTAATATGGCACGCTC 254833 35 94.3 0 ................T....C............. | ========== ====== ====== ====== =================================== ========================================== ================== 7 35 97.5 39 ATTAGAAAATAAAAACCCCGAAAGGGGACGGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGATATACCACTAATCGATTTCCTTCGCAAAGAATGCCGCTGCTTTTTTTAGGAAAGATATTTCCTTATCTTTCTCATTAAGTAATTGATTAAGTCTTCTGATTTCTTTTGCTTCATTGGATTCAGTGGTACTGTGAGTGGTATAAAGGCATTCTTCTTGGTATTTGTTAACCCATTGACTAATAGTACTTTTAGCAATGTTATATTCTGCTGAAAGCTGAATGTAAGATTTGTCGCCGGTCATATAGGCTCTAACGACTTCTTTTTTAAAGTCTTCACTGTAACGTACTGACATTTTTATGTCCTCCTTGGATAATAAATATTATATATTATTCGAACAGAGTGTTACAAATTAATTATATCAGTACAAAGTAATA # Right flank : TTTGAAGTGTTTTTTTAGCGTCATATTCGATACTGTTATACTTAGAAATACCCCCAACAGGGGACGGAACCTATCTGCAAATCCTATGAACATAATACTGAAATATTGTTTTCTTATGTAAAGTGGTATCCTGACCGGCTAAAGAAACGACCGATCAGGTTACATAAAAAGTATTTTTTAAACCTCATAGTATGGAAAGACCTTAAAGAGTATATTATCCATTGAATAATATTTTGAATTTTTGAAAAAGAGTATTCAGTGAATAATATATTTTTTTTATATTTAATATTATTATCTGTATATAGGCAAGAACCGGCAAGAAATACTCTGCTTGGAATCTGCAAATAGACATTATATTTTTAAGGAGGTTTGTTTAATTTATGAAGAAATTAGTTTGTGTCCTTACACTTTCTGTAATGACTGTCCTCAGCAGTATATGCACATATGCAGGCAGTTGGCAGAGAGATCATATAGGTTGGTGGTACAAGTTATCAGGAGGC # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAAAATAAAAACCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 257331-256499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378829.1 Johnsonella ignava ATCC 51276 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 257330 35 100.0 39 ................................... TGAGTTTATGGGCATCCTGTAGTAATTTGCTTTCTACGA 257256 35 100.0 36 ................................... TTGGGTTTCGAAGTCAGGTGCTTTGATGTAAAGTAT 257185 35 100.0 37 ................................... TTGGTTGTTTTACTTTGATATCCATGATAATTTTTCC 257113 35 100.0 36 ................................... TGTCTTGTGAGATAATACTCGCCTTTTTCAGACTGG 257042 35 100.0 35 ................................... CAAAAGAATAACTTTTGTCAAAGTATTTTTTCATA 256972 35 100.0 37 ................................... ACACATTAAGCTTGTTTCAATAAATCTAGTATCATCA 256900 35 100.0 39 ................................... TTAAATCTTTACTAATTTTCTCCATTTTTATTACCTCTT 256826 35 100.0 40 ................................... CTGTTTGTGTTCTTGAGTTTTTCAACAGACTGAAGCTTGA 256751 35 97.1 38 .....................A............. AAATATTCGGCAAGCGTAGTACACGTATCGCCATGTAG 256678 35 97.1 38 .....................A............. AATTTTTGAAGTAAGCAAAGCTGATTTTTCTTGCATTA 256605 35 94.3 37 T....................A............. TTCAGGCTTCCTTGCGGAGTGTCAAATTGTTCTGCAA 256533 35 91.4 0 T...............T....A............. | ========== ====== ====== ====== =================================== ======================================== ================== 12 35 98.3 38 ATTAGAAAATAAAAACCCCGATAGGGGACGGAAAC # Left flank : ATATAAAAAAGGCGATATCTGAAGACTATAGGAATTATAAAAAAGAGTTTTTAAGTAAATTTAAAGAAAATGTACAACTTGATACAACATTGGATAATGTAATTTTTATAGGCGGAGGTGTGGGCTACGCATCGAAAACATATACATATGCGGCATTGCATGGTAAAGACGGTATTAAAAGGGTTTCAAACATACTGGCTAAAGTTTTTGAAAATAGAGGACATGCCGGAGACTATAAGAAAGGGGCTTCACCAAGAATGTTGAAATGCACTGAATATTGTGGTAAAATGATGCAGCTCGGAGCTTGCCTGATTTCTTTTGAACCCCAATAATTGTTTATGTAAAGAAATCATGGTTTATGAAATGTTTGCTCCGCACGGCTTGGATAAAGGGCTTGGGCTGTATTTTATATCTAAACAGCCGGAGTTTTATTAAAAAATATGTTTTACGCCGTAAAATATATGTAAGCCCTTTAATACAGAGACTCCGCAGGAGGTAGG # Right flank : AGTATGTCTTCCGATTTTGCTGTTACATCATCAGAAGTGTACTGGTCAAGCTTTTTTGTAACACCTTGTTCGATAAATATCTATCTGTAGCGAGCCTCCATTGGTGTTAAATAATTGTTATACGAATGAGGTCTGATGTAGTTGTACCAATTGATATATTTTGTAGTAAGTTCATCCATTGCCTCTGCACTAGTGAAACTGGCTACATTATAAAAATTACTTTTAAAAGTATTATAGAATCTTTCCATAGCTGCATTGTCGTAAGGGCAGCCTGCTTTACTCATACTCTGAGTTACATTGTTGTCTTTGCAGAAATTTACAAACTCACAAGAAGTATACTGTACACCTTGATCTGAATGTAAAATAACAGAAGGATATTTTTCCTTCTCTAAAGCCTGAGTAAGTGTATCTATAGCTAATTGTGTGTTTATATAGTCGCCATTAACAGAAGCTATTGCAACTCGGTCGTATAAATCTATTATGGAGCAGTTGTATCTAAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAAAATAAAAACCCCGATAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 426-3639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378833.1 Johnsonella ignava ATCC 51276 supercont1.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 426 30 100.0 35 .............................. AATATAGACAACAAATGGTATGTTTTTGATGATTC 491 30 100.0 39 .............................. CTAACGTGTCCTTATCCTGAAAATAAAAGCGGATAAACT 560 30 100.0 37 .............................. AATTACAGGTACAGGCTACTACAATAGACAGATAACT 627 30 100.0 35 .............................. CCCGATAAAAAGGAAATTGACAGAATAATTATCGC 692 30 100.0 38 .............................. TTCTTGCCATTTTCGCTCCTTTCATCTTGCATTTTTAA 760 30 100.0 38 .............................. AGTACATACAGTGTGTATTAATACATTGCCATGCTTTC 828 30 100.0 37 .............................. CTTGCTGTAATACAGTAAGTGTGTTACCCTCTGCTGA 895 30 100.0 36 .............................. CTGAAACCTCTATATATGAATAGCCTTTGTTTAATA 961 30 100.0 36 .............................. TACAGTCCTTTTGACCGTTAGAGAATTTACAGGTAT 1027 30 100.0 36 .............................. AAGTCAATTACAGCAAAAGTATAACGATTTACTTAC 1093 30 100.0 36 .............................. CTATGTACCTGCAAGCTTTGAAAGAGACAAAGAAAA 1159 30 100.0 38 .............................. ACGGTTCCTTCAACGTAGGGAATGACAATTGCGGAGAC 1227 30 100.0 36 .............................. ATAATTTTCACTAACACACCTAAAGGTACAAAAATT 1293 30 100.0 36 .............................. AAGAACTCTTGACACAATCACAAGAGAGATTATAAA 1359 30 100.0 38 .............................. GCTTGCTGCAATACAGTAAGCGTGTTACCCTCTGCTGA 1427 30 100.0 35 .............................. CAGTTTTAAAAATCCTTTCGAACATTTCATAATCA 1492 30 100.0 36 .............................. ATGCCCCAAATGTGCAATACAACCCGTGAAGTTTTC 1558 30 100.0 36 .............................. AGGAGTTACTCCCTCAACAAGCGGAGTTAAAGCCTT 1624 30 100.0 36 .............................. GCCTTTATATATCTTGCCCTCTTAAATTCAAATTCT 1690 30 100.0 35 .............................. TTTCTAAATTTTTCAATATAACGTATAAGTTCATT 1755 30 100.0 35 .............................. GGCGGATATTGTGCTAGATTATAAAGAAATTACAT 1820 30 100.0 37 .............................. CCGTTCCTTTATAATCCTTTATATATGCGTTTTCGTC 1887 30 100.0 36 .............................. AACTACTAAGCGAATAGATCCAGTCGATGCGACTCT 1953 30 100.0 36 .............................. AAGTCAATCCTTACTACAAAACGCATGCGGATTAAA 2019 30 100.0 38 .............................. ACAGATGTCAGATTATTTGCGTCTAAGTCGGAATGTGA 2087 30 100.0 36 .............................. TGCAACATCCGTAAAAATATATTCTAGAGTATCTCC 2153 30 100.0 37 .............................. AGAGGCTGAAAACGGGCAAGGACTTTACAGACAATAT 2220 30 100.0 35 .............................. TTAATTGTTCCTCGCCAGTCTCGATATTTTTTATC 2285 30 100.0 37 .............................. CATACCCAAACGCCTTACCTATTTGTGATACTTTTAA 2352 30 100.0 36 .............................. TGAAAGGCTTGTACAAGGTGAAAATGCGTTAAGCGC 2418 30 100.0 36 .............................. ATATTCTCCACAAACATAAAACTTATCTCCATATGT 2484 30 100.0 35 .............................. CATGATGAATCGCAGTTAAATACAAGCTTTAATTC 2549 30 100.0 36 .............................. TCTTGAAACCCTTCTCAGTAAGAAATCTGAAGAAAT 2615 30 100.0 36 .............................. TATCAAAGAAATTAACAAGTATTTACTCGAAAAAAT 2681 30 100.0 39 .............................. CCGGTGTTCTGTCTTACAATTTCTTGATAGACAGCACCT 2750 30 100.0 37 .............................. TAAAATCATAAAAAGCAGAATAAGACCAATTACACGA 2817 30 100.0 36 .............................. TGCAACATCCGTAAAAATATATTCTAGAGTATCTCC 2883 30 100.0 36 .............................. GTGCTAACAAAGATATTTTCACTTTCCTGGATATCT 2949 30 100.0 36 .............................. TGCAACACCTGAAAATCCTTATACTACAGATTATCA 3015 30 100.0 38 .............................. GATAACACATATAAATTTGTGTTAAGTGGAAATCCTTT 3083 30 100.0 35 .............................. GCAACACCTGAAAATCCTTATACTACAGATTACCA 3148 30 100.0 35 .............................. CAGACACATATGAAAGACCTAACGTAAAAGTTGAG 3213 30 100.0 36 .............................. AATGATTTACTAAAAAAAGCTAAGTCCGTATTAAAT 3279 30 100.0 35 .............................. TGTGCCTTTTGGTCATTTAATAATAGATTATTAAT 3344 30 100.0 37 .............................. ATTGACAGAATAATTATCGCAGGTGGACATAATGACA 3411 30 100.0 36 .............................. CTTTATCATCTTTTTCCCATTTTTTTATGTATTCGT 3477 30 100.0 36 .............................. AAGGGAATGCCGTGTGCGTTCCTTTTTTATTATAGA 3543 30 100.0 37 .............................. CACTGTTAAAGTACCTGAAATGAACACACGTTCCGCA 3610 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================= ================== 49 30 99.9 36 ATTTACATTCTACTTTAGTTCCTTTAATTC # Left flank : TAACGGTAATGAGCCTTTATTTCTTCCGGCTTACGGCGAAAAAACCGAGAGCCTCTTTAAGAATGTCATTAGACCGTTGAAGTTCTAAAACCTCTTTTTCAAGCTCGCATATCTTTTGATCCTTGGCATCATTAGATAAACGTTTGTTACCGCTTCCAACATATGCGGTTTCCTGATATTTTTTACGTTTATTACGCCAGCCCGAAAGGGTGTAATAAGGAATACCGAGTTGGTTAGCAGCGGTATTAAGACCAATTTCATCGGATAGCTTAACAGCCTCTTCTTTAAAAGTTTTGTCGTATTGCATTTTGATCACCTCTGTGTTTTTAATAATACCATAGATTTGGTGAGTTTACCAACTCTACTTAAATGCTACCACTCCAAATTCCTGTATTGCTCGACAGGGATCCCCATTTGTTCGGCTTA # Right flank : GGAACTGTCAAGATAAGTAGAGTCTTCAAACTCACTAAATTGTTTATGGTTCCTATGCTGCCAGAAGTTGAACCTCCAGCAACTGCTTATACATAACCGGCGGAAGTCCATCCGGGTTTGATGTATATATCCGTTTTTGATTGTAATATATAAATACATACCTGAAGATCATTGTTTTTACTTCTTCTCTTTTCATGCGATAGGTTGGAATCCTGTAAAGGAGTTCCTTCTTGAGCGTTGCGAAGAAGCTCTCCATCCTAGAGTTATCAAAGCAATGATTGACTCCGCTTAAACTTTGACTAACTCCTGCATTAGCAAGAACCTGTTTAAATGCTTCGCTAGTGTACTGACTTCCTCTGTCAGAATGCACAATAGCACCGTTCAGATTGTATTTTTGTAGTTACAGCTTTAAAAGTATCAATGCACAATTCTTTCTTCATGTTATCTTTCTATTAGTAATGGATAGTATCTCTCCNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTTTAGTTCCTTTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 4998-7086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378833.1 Johnsonella ignava ATCC 51276 supercont1.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4998 30 100.0 37 .............................. TCAAAAAATTACAATTATATAATCTACTATATATAAC 5065 30 100.0 36 .............................. TCTTGAAACACTTTTAAATAAAAAAACGACAGAGAT 5131 30 100.0 37 .............................. AAAATAACAGGATTTTTTAAAGCTATTGATGTACAAA 5198 30 100.0 36 .............................. AAGCGATAAAAAATATAACTAAACAAGCTAGCAGCG 5264 30 100.0 35 .............................. CGTACAATCGCAAAATTTATGTTAAATGCTTTGAC 5329 30 100.0 37 .............................. AAAATGAATATTTTATGAATACACCTTGCAAAATAAA 5396 30 100.0 36 .............................. ACATAAAAAGTTTTATTAAAATTTAAGAGGTAAAGT 5462 30 100.0 36 .............................. AGATATGTGTTATTATTAATATCGCATATCTGGCTG 5528 30 100.0 37 .............................. AGGGAATGCCGTGTGCGTTCCTTTTTTTTATTATAGA 5595 30 100.0 36 .............................. ATTCATTCTGTAAAAAATGAGTACTGTAATAAATGC 5661 30 100.0 37 .............................. AATTACAGGTACGGGTTATTACAATAAACAGATAACT 5728 30 100.0 37 .............................. TAGACACTATAAAAAATGCAAAGGTTGGAAAAGAATT 5795 30 100.0 35 .............................. GCACTTAACTGCAATTATTTAAGTTATCAAAATTC 5860 30 100.0 36 .............................. ATATTCCGTGTTAGATATCTGAATACCAACCGGGAC 5926 30 100.0 37 .............................. GCAAAATAAAAGGTTTAAGCAGAAATTATAAAAATAT 5993 30 100.0 38 .............................. TGCAAAATAAAAGGTTTAAGCAGAAATTATAAAAATAT 6061 30 100.0 37 .............................. CAAAAATAAATGATGTTGATAGAAAGACGCTAAATGT 6128 30 100.0 34 .............................. CTACCTTGCGTAAAGTTAGTAAAGTACATTTCCA 6192 30 100.0 37 .............................. AGGGACAGGAAATTGACCTGTATCCACAAAAAAATAA 6259 30 100.0 38 .............................. ATATGCAAGTTCAAATGACAAATTATCTGAAAAAATAG 6327 30 100.0 36 .............................. ACTGTAACAATAGAAAATGTAGAGACGGATAAAATC 6393 30 100.0 37 .............................. GTTGGGTAAAACAGTATTTTGTCAAAGCGGCAGAGCC 6460 30 100.0 36 .............................. CTCTCGCCTTGTTCCTCAACTTCCTTTTTAATTCCT 6526 30 100.0 37 .............................. GAAACAATGAAAATTCTTTTTATATATCTTCATAGAC 6593 30 100.0 36 .............................. TATGACTAGTCCGCAAGAGTATATCGACAAATTAGG 6659 30 100.0 35 .............................. ATGCAACAGAAGATTGACGAACTAAAAGAAACATC 6724 30 100.0 37 .............................. GATAGTTTTTCTTTATTCATAGTTTGAACCTTTCTGC 6791 30 100.0 35 .............................. CAGGCAACTAGTACAGCTACCCCAAAGAAAACTAA 6856 30 100.0 37 .............................. GAAAAATACAAGGAACTAAAAGGAGAAGATATCATAC 6923 30 100.0 37 .............................. GTATCAAAGAAATTAACAAGTATTTACTTGAAAAAAT 6990 30 100.0 37 .............................. CTCTGCAAGCTTAAAAGCCATGATATCGTTATCCAGC 7057 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 32 30 100.0 36 ATTTACATTCTACTTTAGTTCCTTTAATTC # Left flank : GCTTACATGAAGTAGTTTCGACACATAAGCTTTACAGTCCAAAGTTCATTGTGCTTGTACATAAATGAACTGATAACGGTAATGAGCCTTTATTTCTTCCGGCTTACGGCGAAAAAACCGAGAGCCTCTTTAAGAATGTCATTAGACCGTTGAAGTTCTAAAACCTCTTTTTCAAGCTCGCATATCTTTTGATCCTTGGCATCATTAGATAAACGTTTGTTACCGCTTCCAACATATGCGGTTTCCTGATATTTTTTACGTTTATTACGCCAGCCCGAAAGGGTGTAATAAGGAATACCGAGTTGGTTAGCAGCGGTATTAAGACCAATTTCATCGGATAGCTTAACAGCCTCTTCTTTAAAAGTTTTGTCGTATTGCATTTTGATCACCTCTGTGTTTTTAATAATACCATAGATTTGGTGAGTTTACCAACTCTACTTAAATGCTACCACTCCAAATTCAAAAGATATGCGTTATTATTAATATCGCATATCTGGCTG # Right flank : CCCGTCTCTCAAGAGTGCCCAAACCAAGCCTTTTGAATAAAGACTTTTTGTCCTCGTCCGCATTTTTAAGTCCTATGGCTTAAAAAAATTTCTCTTTTGAGAACAAAGCCATTATATATCATATAGTATAGTTTGTCTATATCCAAGCTTTTATACATTATCATATATCGACAGATTTAAAAAAAATTAGAAGTTTTGTCATCTTCTATACCCCAAAAATCCTTATCAAGCCATTTTTCACTTCTACTAGTAAAAGTTATGACAGAATCCTTGTCTTTTCTTATATAGACACCAAGTTCTTTCTTTAATTTCATGTAATTCAGTTGTGTAATATCTCCCTCAAATACCGATTTTTGTATGTGTACAAGATATTTTTTACATATTTTAAATATATTCCTTGATATTTTAGGGCTTTCTTTATCATTAAGTATATCATAAACTAAAATCATATACATTTCCAATCACCACCAGATTACAAATCCGTTATAATCCTTCTCTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCTACTTTAGTTCCTTTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //