Array 1 2658-2982 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000278.1 Geitlerinema sp. P-1104 NODE_278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2658 36 100.0 36 .................................... AGCAGATTTTCGTACAATAATCGATATGGCAAATTC 2730 36 100.0 36 .................................... CAAAAATTATCATCATTATCTAAAGTCCTTTGAATC 2802 36 100.0 36 .................................... TGCCAACTGCTATTACTTCTAAACTTTCTCTGATTG 2874 36 100.0 37 .................................... AACTCAGATTTCGCCGTGCGACGCCGGCGACTGAAAT 2947 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 99.4 36 CCGAAATCCACCAAAATCCCTTTTAGGGATTGAAAC # Left flank : TCGCTGACGGTAACGTGCCAACCGTTGTGCTTCAGCAACCGGGCCGCCGCCAGTCCCGATTTTCCTAATCCGATAATGTGAGCGGTTGACATACAGGTTCCCTCCCTGACGGAAATTCATCTAATCTTGCCATATTTCTGGGAATGGGGAACAAGGAATCGTTAGACTGGGGGGGCTGAGTGATGGTCGGCTTATCTATATATATATGGATGGGGTTCGGGGTCTGAATCTGTTAAGGAATGTTGCGATTTGCGCGAGAGGGTAGTTGTATGAGTGAGGGAGTGGTGAAAATGGGCGGTATGGCTGATGGGGTCTGGGTTTCGGGCGTTTTGCGGTTTGGGGGGTCTCGCGCAAACTCTGTAATGCTGATGGGTTGGGCGTTTTGGGGTTTTTGGGTTGGGGCTGGGGTTGTGCGTTTGGGGCGATCGGTGTTATTGTTGGGGGGTCTCGCGCAAATGGACCTTGAAAACTGCATAGTGTCAGGGTTCCAGATGGGGTCC # Right flank : AAAACACCCTACCTAGGACAATGCTTACGGCTAATTGTTTGCAACCTGAATGCTTAAGCATTTTATATGAACTGGGCTAGGTCTATAAAATCTTCAAAGTAATGCTTAAAACTTATAATTATATTGGTATAATTATATGGGCGCTATTATGACTAGCTGCCTAATCAAACAAGGTTAAGAAGTGAGCCTAAAGACCATTGCTCATCTAACCATTCCAACTATTTTAAATTTACTGACTCGATAGAGTACAACTAATTTGCTCGATTATGAATTCAAAAAAAAATCCCAACAAAAAAAGTAAAACCGTTAATTCACAAGCCCTAGCCTATAAGCTAAGGTTAACCTACCAATCAGGCAAGCCAATTGATATAGATGATGTCAAATTACTATCAATGGCTCACGATGCCAATAAATTTAGGTTTAGTGTTCCCATTGATAAGTGTGTTTCTAGCTATGGTTGGAGGTATCTGCCAGGAGAACATCCCTTTGTGAATTTCTAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAAATCCACCAAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 3839-850 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000297.1 Geitlerinema sp. P-1104 NODE_297, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3838 37 100.0 33 ..................................... TCATTTATTCTGCTCTTGCCGATGTTGGTAAAA 3768 37 100.0 39 ..................................... GCTGCCTACGGGTGGCTTACCCATGATTCTGCTCCATCC 3692 37 100.0 37 ..................................... TTAGCGAGGTGTCAGAGGCGTTCCAGTTGAAATTGTA 3618 37 100.0 32 ..................................... TTTGGCTCACAAAACCTGGCGCGGCATTCCCG 3549 37 100.0 34 ..................................... GGAATAACCCTCTTTAAGAGTTATCCCTAGTTTG 3478 37 100.0 37 ..................................... AACTTGATTTGGGATGAGGCTCTGGCCGCCCTCGACG 3404 37 100.0 35 ..................................... GAATCCGAAAGAATCGGGCTATCTATCGGGGAAAC 3332 37 100.0 43 ..................................... GAGGCTTCGTACTACACGGCCCAGTACGCCTGGGATATGCCGC 3252 37 100.0 38 ..................................... GTACAGCTTTGACTTGATCACAAAATGATTCTTGTTTC 3177 37 100.0 38 ..................................... TTGCGAATCCACCAAACTGCGTTAACTCGTGGGTGGCT 3102 37 100.0 38 ..................................... GAAGATATGCCGCTTCTTCGTTGGGGTATTAGTGCCAC 3027 37 100.0 34 ..................................... GCTTTGTACAAATCTTTGAAGGAATAGTACCTTA 2956 37 100.0 37 ..................................... GGACGGCTAGATTGACTAGGAGGGCGATCGCCTTGTG 2882 37 100.0 35 ..................................... CCTGATATGTAAAATCGCAAAAATCGGGGTGGAAG 2810 37 100.0 37 ..................................... AGAAGCGACACCATAAATTAAACCGGAACCAAGAAAG 2736 37 100.0 36 ..................................... TAGTGCCTCCCAGTCGATGGGCGCCCCGTCCCCCTC 2663 37 100.0 38 ..................................... GAAATTTCTGAAGCGCCAACCTCTGCAACTTCTGATTA 2588 37 100.0 35 ..................................... TGGGGTATGTGCTACCATAGATAAAACCAATCAGT 2516 37 100.0 42 ..................................... GAAGGGTAGAAAAAAAGTGCGTTCGGGGTGCGCGTGGTTAGA 2437 37 100.0 36 ..................................... GGACGTATCAGTAAGTATGACGACAGCGGCCGTAAA 2364 37 100.0 34 ..................................... TTTCGTGTAGAGGTCCCATAGACATCTCTGGGGG 2293 37 100.0 38 ..................................... GTGACGGTGGTTGTGACGGTACTCCCATCAAACGTCGG 2218 37 100.0 37 ..................................... CGTCCCCCGGCCGGCGTGGTTGGCTCGGTCGTTTCTC 2144 37 100.0 37 ..................................... TGGCAGCGGATTTCATTTTCCTGTTGTAGCCGTAGCT 2070 37 100.0 40 ..................................... TAGCTGCGCCGAGGACTGTATAGACTCCTGAATATCCAGC 1993 37 100.0 42 ..................................... GAAATCTTTTGCCAGCCCGAAAAACTTTGAAGCCCCCCGCCG 1914 37 100.0 38 ..................................... TATCTCTGGTATTTCATCTGGATCTTCCTGTGAAATAT 1839 37 100.0 35 ..................................... CTAAGGCGAGAAACCCGGCGGCGATCAACCATTCT 1767 37 100.0 34 ..................................... GTTAGGGAGCGTCCATCCGAGAGGACTAATTCCA 1696 37 100.0 33 ..................................... TTGGACATAGTGACCAGAAAGGGGGACGATAGC 1626 37 100.0 35 ..................................... CTGAAAAATCAACATAATCAACCCCCCGGATATCT 1554 37 100.0 38 ..................................... GGGAACATGGGGAAGCTAAAAACTTTGAGCCGGATCTC 1479 37 100.0 38 ..................................... CCAGGTTGGGCCATCGCGGCTTGGGTCATCGCGGCTTG 1404 37 100.0 35 ..................................... AGTGTCGGCGGCGATCGCAAGCGCCCCCACCTCGA 1332 37 100.0 34 ..................................... CCCTGTTCGCTCTTCTTCTTCTAATTTTTTTACT 1261 37 100.0 40 ..................................... TCCCGATATTCAATCCCTAAAGGTTGGTCTATCTCGGGTG 1184 37 100.0 41 ..................................... GGAGGAAGCTCTGTTTCTCACCCCGGCGACCGGTGGTGTTA 1106 37 100.0 35 ..................................... GTATTCATCCTGAACTGCTTTGCCTCTCATCACTT 1034 37 100.0 38 ..................................... TGAGCAACACTAACTCCAAAGTTTCTGAATGCTGATTT 959 37 100.0 36 ..................................... CATCCGTCGCCTCCTCAAAGTATTCCCCCCGCTGCT 886 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 41 37 100.0 37 CTTGCAATTCCTCATAATCCCTTTTAGGGATTGAAAC # Left flank : GCAGTACATTGTAAGTGTCGCGCAAATTCGCGATGTCTGTCTGGGAAAGGATTTTGGAGGTTTTTGATATGCAAGGGCTTGCGTTTTTCGATCAATGGGTGTTAGAATCAGGGGGTCTCGCGCAAATGCACCTTGAAAACTGCATAGTGTCAGGGTTCTGGAAGGGGGC # Right flank : TAACAAAAGTTCATAACCTTGCGTGCTAGGATTAAGGAAACCGTAGTTAATGGGACAGATGGCTAAGAAAAAAATTCCACCTCGAAACCCCAAGGGAATCAACCAATTCGCGGGAACCAAGAGCCGAAACAGTTTCAGCTTTAGGTTAGACGCCAAACTAGATGAAAAGGTGCGGGAATACTGTGCTGCGCACAACATTACCCAGACTCAGTTCTGGGAACAGCTTGCCGAAGATTTTTTCTCTATAGAATAAAATGAAGTTCCGTTAAATCAGCCGCCCCATTTAGGGCGGTTTTTTCTGCTTGCAATTCCTCATAATCCCTTTTAGGGATTGAAACTCAGTTGCCCTAAAACATCCATGATTGCCGAAAGGTTCTTGCAATTCCTCAATTCCTCAGTGTCTCACCTCTGGGACATCGCGGGACTGACCCTCAGCCCCCTAATAAATGACACAAGAACTAGGACAACACTTCGCGCTCAACACCCGATGCCTAAGAGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCAATTCCTCATAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 1173-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000375.1 Geitlerinema sp. P-1104 NODE_375, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1172 36 100.0 38 .................................... AAAGTGTCGGGATGGATTGAGTATCAGAGCAAGACCAC 1098 36 100.0 38 .................................... GAGATAACTTCAACGAAAGAGCGTCGAGGTCGGCGACA 1024 36 100.0 36 .................................... TCGATTCTTTTTCGCGTTATTGCCTTCTTTGGTAGT 952 36 100.0 37 .................................... AGTTTCTGGATGAGCTTGAGGAAACTTTGAAATAATT 879 36 100.0 36 .................................... ATTGATTTTAGCATTTCCACAACTCCCCCCAGGAAT 807 36 100.0 37 .................................... CTGATAAAACCTTTGAAACAGACGGAATTGCCGCACC 734 36 100.0 36 .................................... AACTCGATGGCTCCAAGAACGGACTGGATGACTTTT 662 36 100.0 37 .................................... ATCCGAGACTTGGAATACCCAGAAGCGAGAAGTTTTT 589 36 100.0 35 .................................... GAGTTCTCCCCAGTAATTAGTCGCCCTCGGGGTGG 518 36 100.0 39 .................................... GGTTCGTTGCTGATCACTTTGTTGAGGATTCCGACATTC 443 36 100.0 38 .................................... GCCTCCTCTCAAGTTTGCAAGAATCGCGCGGATATTAT 369 36 100.0 38 .................................... ATGGTGAAACGGTCGCCCTGGCCGTCCAAGATTAGATA 295 36 100.0 39 .................................... GACCAATGCCGCGAAAATAGATCCAGTCACTAAAAAAGC 220 36 100.0 35 .................................... ATACGTTGGGCGGAATGAGTCTGGATTCTGTACCT 149 36 100.0 36 .................................... AAACGGGATTGTTCGGGTTTATGAGGGTTCTTCTTT 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 100.0 37 GTTTAATTCCTCTGATTGCCGAAAGGCGTTGAGCAC # Left flank : TGCGACACACATCAAGGATATGCTCAATCTCTGAAACCTGCTCAACCGTTGGCTCTAGCTTAAATTCCCACGTCATGTTTAACATCAACCCATTATACCCTAAGAAATGACTGTCTGCTTCTTAGACTGTCTCAATGACTCCCTATGCCTTTGGCAGGCTGCGCCAACGGTCGTCCGTCGCCTCACCACCCCCTAACCGCTTCGCGGTATAGGCGGAGCACTGCGACGGTTCTTGGTAGGGGAGGAGAATGTGCAAGGATAGCTGGATGTTGGCTCAAGGGAGGGGTGACCTATGGCTGAAATGCCTGTTGGTTCAGGGTTTTGGGCTTTTAGGAGGTGCCGATGTTGCTTGCAATGTCTGGAAAGTCGGTCTCTGTCTAGGTTTGTGGGGTCTGCGGTTGGCGGCTGCGGAGGCTCTTGAGGATGGGTCAAGCTATCCGGATGGTATCCTTGTGAAATGGTCTGGGAAACGAAGCTCTATGGCGGTTTCCAGGGTCGCG # Right flank : CAGTTGATAGGTGTTGAGGGTGCTTATCGCGTCCCCCATGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATTCCTCTGATTGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 2343-1199 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000385.1 Geitlerinema sp. P-1104 NODE_385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 2342 37 100.0 38 ..................................... TAGAAAGCATTAAGCAGCAGAAGCCCCCACATATTTAA 2267 37 100.0 38 ..................................... CACTGATAGTAGGGAGAGGCTCGGTCGACAACCTGCAC 2192 37 100.0 34 ..................................... CGCTATGATGGATTTAGTAGATTTTCGTACAAAA 2121 37 100.0 42 ..................................... CAAACATTCATCCCAAGATACCAACTCAGAGAGCAACATTGC 2042 37 100.0 34 ..................................... GGTTTTCGTCCTTCCTGTCGTCAGTTGTCCCTCT 1971 37 100.0 45 ..................................... CGGTACTGGAGGGCGCTATCCCGGAGTCTCCTCCTCCTCCCCCAG 1889 37 100.0 35 ..................................... GAAGAATACAATTAGCAATCTCAAGGTCATAAATC 1817 37 100.0 37 ..................................... ATCGCATTCGACCGGGGAATTCCGCTACTTTACTTTC 1743 37 100.0 37 ..................................... TAAGTGTGCTCGCCGGCCTCCACCGAGGATTATCCGT 1669 37 100.0 33 ..................................... ATCATTGCGGCTATTTCAATAATCGCTCTCAAG 1599 37 100.0 37 ..................................... GATTCTTTTCCATTTGATATTGTTAATGCCGATTTCC 1525 37 100.0 36 ..................................... AAGGCGAGTGAGCCTAATTTTGCCCAAATCGCGGAA 1452 37 100.0 37 ..................................... GTTAGCTCGAATGGCTTAGGTTGCGATCGCACTTCAT 1378 37 100.0 33 ..................................... GCTGCATTCTAAATCTTCAGTCCCCGTGGCGGC 1308 37 100.0 36 ..................................... GTCGCGCCCCTGGAGGCCAGCTCGGCCCGACCCCAT 1235 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 16 37 100.0 37 CTCGCAATTACCGATAATCCCTATTAGGGATTGAAAC # Left flank : GCAGTACATTGTAAGTGTCGCGCAAATTCGCGATGTCTGTCTGGGAAAGGATTTTGGAGGTTTTTGATATGCAAGGGGTTGTGTTTTTCACTCGATGGGTGTTAGAATCAGGGGGTCTCGCGCAAACGGACCTCGAAAACTGCATAGTGTCAGGGTTCCAGGAGGGAGG # Right flank : GAATGATGCTTAATTGACAGTTTTTTCAATCCTTCATATTTCTGGAAACCTTTACAGGCTTTAGATATGGTAAATTGATGAACTGAATTAAACCAGTAAATATGGATGCAATATTGATGATTATAATTGCTTTTTTACTCGGTCTCTTAATGTCTGTGAATGATGTTTTCATTGGTCTTGTATTAGCTCCTTTATTGAGTGTTATTTTGGGTCTTCTGGGTTTAGGGTGATAAGGAAAATTTATGGCAGATTACACCCGTTACTGTAGGGGCGAAAAATTTTCCCCTCCTGGGAGGGGCTAGGGGTGGGTTCCCCTACAATTTTGTATATTCTGTAACAAATCCCACCGTAGATCCAGAAGACCCGTTATTTTTAGGATACCGGTAGAAGATATTGTTATGACAACAATGGCTCTAGGAGCAATAATTGTTTTTTTTATTCGTTTTTCTGTAGTATTAGTTCCAACAAAAAAATAGGGGTCTTCTCGATTCAGGGTAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAATTACCGATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 3067-353 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000130.1 Geitlerinema sp. P-1104 NODE_130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 3066 36 100.0 37 .................................... TTCCAGGCCTCGAGTTCGCTCAACATTTCTTCAAACA 2993 36 100.0 38 .................................... ACTTTTGAGCTTAGCTTAGCGACTTCTCTTTTTATTTT 2919 36 100.0 39 .................................... GGGAACTCCCGGCTAGTAGAGACCATACGTTGAGCGAAG 2844 36 100.0 39 .................................... TGCATCGTTACGTAAGCGTCCATTAAGGACGCTGCGTAT 2769 36 100.0 40 .................................... TTTGTATCTCAAAAACTAAGTGAACTAAACTTAAATGAAG 2693 36 100.0 39 .................................... CCCATAGTTTGGGGGAGAGCCACTCCCTTTTGTTTTAGT 2618 36 100.0 40 .................................... ATGTCCCAAGCAGACATGACCTCCCGATCTTCGAAGAAGA 2542 36 100.0 37 .................................... TTTAGAGTTGCACATTTACCGCCACTGCTTGTGTAAT 2469 36 100.0 36 .................................... CTCCCCTCATTAGGGCGGCCACGGTCTTTGCCGCTT 2397 36 100.0 40 .................................... GAGATAATGCTTAAGAAACTCAAGTCCGTTTATGTTGCCA 2321 36 100.0 36 .................................... TGGGGTATTGTTAGCACATCATAGTGCACATCCCAA 2249 36 100.0 38 .................................... ATCGGTCCCCGGCTCTCCGGCTTCGCCTTCAAGCTCGA 2175 36 100.0 38 .................................... TATTATTTAAGATCAGTCAATTCATCTAAGAGCAAAGC 2101 36 100.0 38 .................................... TAGAAGCTTCTCAACGAACGCCCCCTGGTCCTCCGGAG 2027 36 100.0 37 .................................... TTCAGGTCAGGGCTCACGTTCTCGAATACCTGTGCCA 1954 36 100.0 37 .................................... TTGCAACACAGTAGTTGAAGCTGTTGACGGTTTTAAT 1881 36 100.0 36 .................................... CCAGCCCAGCTTGGAGCTGGGTGTAGAGACCGTGCC 1809 36 100.0 42 .................................... GGGGCATACCCGCCCAGCTTTTGGATATATACATAGCCCTGA 1731 36 100.0 37 .................................... GCCGCACTGGCGTAGTTTCTCTAGATCCTCCTCCGGG 1658 36 100.0 37 .................................... TTAGAAATCTGTGTCCCACTGGACACTTGGACGGGGA 1585 36 100.0 39 .................................... AAGGAGAAAATTTATGGCCCGCACCTACCGAGTCATGAA 1510 36 100.0 38 .................................... AATTAACTATTTATTATTAAACTAAGTTAATTATTATG 1436 36 100.0 36 .................................... TTTGATCTCCTCGGAAAGTTGGCCTTCAAGGGCGGA 1364 36 100.0 39 .................................... TAACCTCGCTGGCATACTGAGGTAGGAGACTCTATGGAT 1289 36 100.0 38 .................................... ATGACCGTCTTGAAGTAGTATTCCGACTCCAGATCCAC 1215 36 100.0 38 .................................... TACCATTGAAGTTTAAAGAAGAAGGTTTCATAGGTTTA 1141 36 100.0 38 .................................... ATGTCCATGCTGAAAGTCTCCAAAATTAACAATTAGGA 1067 36 100.0 44 .................................... ATTGCCGGGGTTCCCCAGGATAAGACGTATTGCCCTTGCTTAAA 987 36 100.0 36 .................................... GTCACGCGCCAGTCGAACCGACCAGCTTTACGTAAC 915 36 100.0 38 .................................... AGGAGATAGTCTAGCTAAAAAGGTTTTAAGTTTTTATC 841 36 100.0 36 .................................... CCAGCGGTCTAAGACTGGGACCCCCTTGTGCCGGAG 769 36 100.0 38 .................................... AACACTATATTCAACCGTGTCGAGTGCCTTGGTCAGAC 695 36 100.0 45 .................................... GTTTGATCTCCCAACTACAGAGCTTGGGATCAAGCAGGATGTCTA 614 36 100.0 39 .................................... TTTAAGCTTTCGATGCCGAACATCACGTCACACTCCACG 539 36 97.2 39 .......C............................ TCGAACATTGCTGCGCCGTAGTTTTCCTCCTCCTCGAAG 464 36 100.0 40 .................................... CCTCAAATACGAGAGCCGGGAACCCGATTTTGGACAATTT 388 36 91.7 0 T......C...........A................ | ========== ====== ====== ====== ==================================== ============================================= ================== 37 36 99.7 38 CCCGCTTTTCTTTGTAGAAGTGGAATGAATGGAAAC # Left flank : ATGGGAAGGATGCGACCGTAGCAGTAGCCGAGGCGGGAGAGGTAGGCGATGGGGATGTCTCGTTGTAGACAGGCGCGGATGGCTTGGGTGGTCATTTGGGATTTACCGAAGATGAGAACTTGTTCGAGGCGGGGAAGTTGGACTTTGGCAAGAATTTGCTCTCGCTGTTTGACGAGGAGTTGTTCTTGTTGCAGGCAGATGTAACAGCCTTGGCGAGAGAGGTAGAGGGTTTGCATGGTTGGGTTTCTGTGTGGTTTGTTCTAGGGTAAGGGGAAAACTGTTGGAAAAAATGAGGTTTGGTGCGAATGACAAACTTTTTTTCGACGGGGTGGGGGATGGGCTGTGATCCCTAGTTTCTCGTTAACCCCGTCGATAGGGCTTGGGATAAGGGTTTCAGGGGTTTTGGGGGAGGGGTTTGCAGTACATTGTGCTGAGGTTTGGGGACCCCGTCGATTTTTGGGCCTGGACACCTGACTCTGAGCGTGTTCTAATGGGGGTGA # Right flank : CCCCATCGACGCAACGACAACGGTCGTCATTGCGTTAGTAATCAAGCTGTAGACAACGGACTGATTTATGCCAACAGAACCCCCCCCAATTCCACCAAGAAACTGGGGGGTTTTCTAATCAGCTCATCACATTATCGAAACTTGACAGGGACCTCAAGACCCCATGATCTTTAACCCTGAAAGGAAAATGTCCATCCTTAATAGGGGTCAATCTCATCTTCCGGGGAATCCGAGAGGGAGGCGGTCATCTCCTGAGCCTGACGCAACAACTCCACTTCAGCGGGAGTCAGAATCCGAATAAATCCGTCCAGACAGAGGGAAGTGATGAGGGTTGACACCGTCACCAACACAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCTTTTCTTTGTAGAAGTGGAATGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 42-1232 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000597.1 Geitlerinema sp. P-1104 NODE_597, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 42 36 100.0 37 .................................... GAGCGGAAATCCCCATGGGGGCGACTACAAGAGTAGT 115 36 100.0 35 .................................... AAGACAGTTCACTTAAATGGCCCCGACGGGAAGCC 186 36 100.0 35 .................................... AAAGGTATGAGGCTTGAAAGAGAAATCTAACAAGC 257 36 100.0 38 .................................... GGCGCAACTACCAAAGTCGTCATGCCTGACGTAATACC 331 36 100.0 36 .................................... GTTAATATGACGGTCCCCGTAAACTCTTGCTCCAGT 403 36 100.0 38 .................................... AATCAAATTTTCTTGAGTCCGAATATTGGTATTCAATC 477 36 100.0 35 .................................... GATTTCCTCCTTGAAGAATTTTCGCCCCGAGAGGG 548 36 100.0 37 .................................... CCGAAATAAGAGCGACATGGCATCGGTCAGAATAGGT 621 36 100.0 35 .................................... GATTTCCTCCTTGAAGAATTTTCGCCCCGAGAGGG 692 36 100.0 37 .................................... CCGAAATAAGAGCGACATGGCATCGGTCAGAATAGGT 765 36 100.0 37 .................................... GTCCTAATCCAAATTTGGCGGCTGCTCTCCGAAATGC 838 36 100.0 36 .................................... GATTTGGGGGGAGGTTATTGGTCGGGGGCTGGGTTA 910 36 100.0 35 .................................... TAACAACTCCCACAGAAAAGCCCAAAAATCGCCAT 981 36 97.2 34 ...........................A........ AGCCAAATCCGAGCATCAACAGCAAGAATACGAA 1051 36 100.0 37 .................................... GAGATCTGGCCGACCAATACGGGACGGGAAGCCTTAC 1124 36 100.0 37 .................................... ATCAAACTCAAAGTTTGCGAGATGGTCGCCCGAAGCT 1197 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 99.8 36 GTGCTCAACGCCTTTCGGCAATCAGAGGAATTAAAC # Left flank : TAAAGAAAAATACAATGCCAATTGTTTCTCCAACGAGTAATG # Right flank : CGCTCAAAAAAGGTACGGCTCATGATGGCTTTGACTGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTTCGGCAATCAGAGGAATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 12234-15027 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000104.1 Geitlerinema sp. P-1104 NODE_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 12234 37 100.0 39 ..................................... CGAGCTGATTGTAGAGCCCGTTCCAGCTTTCGATCGCAA 12310 37 100.0 41 ..................................... AGGTGTAACTCATAATTGAGGGCGTGGGCCCAGAGCGTATC 12388 37 100.0 42 ..................................... TTAAAGCAAGGAAATATCGGGGGTTTCCACCTTTTGCAGACC 12467 37 100.0 38 ..................................... GTGTGAAGGCACACCGCAACGATTTCCCCGTCAGAGGG 12542 37 100.0 35 ..................................... TATAGCTCGTAGGTGTGGGCGAATGCCCACAGGGT 12614 37 100.0 36 ..................................... ATTCGAGCATCTTTTTCTGGATCTTAATCCCCACGT 12687 37 100.0 38 ..................................... TATATCTACACTCTTTATAACCTAAAAGTTTTATAGCG 12762 37 100.0 37 ..................................... TCCAGAATAGCAAGGACTTTCCAAATTGTTTAAGGTC 12836 37 100.0 41 ..................................... GGGTCGGTAGGAGTATCTCCCAAGAACAACTGCGCTTGAAG 12914 37 100.0 39 ..................................... TCGACTGGATCCCAATCGATCATCATTAGATCGTTGAGC 12990 37 100.0 40 ..................................... AGTTACTTCGAACTCATCTTAGCCTAACTCATTAGCTCCA 13067 37 100.0 39 ..................................... TAAGAAGAGAATAGCTATTAAAGTTATATTCCGTTCTAT 13143 37 100.0 42 ..................................... GGCCGTTCACCAACTTCTTACGAAGTCCTTTCGCTTCTAGTT 13222 37 100.0 43 ..................................... AAGGGGGTTTAGGTGAAGGAAGCGACCACCTCGATCCGCTCCC 13302 37 100.0 37 ..................................... GGAAGAGTTGAGCCATGGGTAGACCGCATCATAAGTA 13376 37 100.0 40 ..................................... TCCGTTGTCTTGGTAGTGTACCAGTGCCGCATCATAAGGA 13453 37 100.0 32 ..................................... CAAAGCGGAAGCGGAAGCGGAAGCTTTAGAGG 13522 37 100.0 38 ..................................... CCGAAGGCGGGTTCCAGGGTAACCACCCCCGGTTCCTT 13597 37 100.0 37 ..................................... GGCAGCCACCACCACCGGAGCAGCTCCGAGCTCCCCC 13671 37 100.0 38 ..................................... TTTCTGGGTCATCAAAAGATGCTTGCTCTCATTCCCGT 13746 37 100.0 36 ..................................... TACATATACTATTCTTCCTCCAGCGGTATATGAGCG 13819 37 100.0 39 ..................................... ATGGGTTAACCGTGGTCCCATGGCGGAACCCCATGCCCT 13895 37 100.0 47 ..................................... GTCGGGGACTTTTAAGTAACCACTTCTTACCGTACTCTTCCCCATAC 13979 37 100.0 40 ..................................... CTCCTGGATGCTCATCAGGACCAGATCCGTCTCTTGCGAG 14056 37 100.0 41 ..................................... GGCACGGGCAAACCGAGCCCGGATGGCCTCTTTCGAGCCTT 14134 37 100.0 45 ..................................... ATGACCCCGGCCAGGGAGGTGAACCACCCTAGCGAGGACTCGACT 14216 37 100.0 44 ..................................... TGGGGATTCCCCATTCCCATGCCCCGTCCCCGACGGACCTGTAG 14297 37 100.0 46 ..................................... CATGATTTGCTCCTTAGCCTTAGCTGCCCCCGCGTTGGCAGCATCG 14380 37 100.0 40 ..................................... CCTGAGCAGCCCGTACCCGGAGGCTCATCACCTCTGGGGA 14457 37 100.0 34 ..................................... TTGGTGGATTGCACCAAGACTTCGTACATCCAAT 14528 37 100.0 42 ..................................... AAGGGCGCGGGCCCACTTGGAGGCGGTGAAGGAGGCGAGATC 14607 37 100.0 36 ..................................... TGACCTTATACGCATTGAAGAAAGGCTTTTTGATGA 14680 37 100.0 49 ..................................... TTCGATCTCTTTGTACGATTGAATGGGCTTAGGAACAAACCGTTCCACG 14766 37 100.0 37 ..................................... CTCAACTTGGTTTCGTCCCCTTCGGCCTGTTTTACCA 14840 37 100.0 37 ..................................... AGGAGGGAAATCCCCGTTGCGCTTCCTCCGTTGAGGA 14914 37 100.0 40 ..................................... TCACTTCCACCGCTTCAATGGACAAGTCGGCGATCCCATA 14991 37 91.9 0 .....................A....A.A........ | ========== ====== ====== ====== ===================================== ================================================= ================== 37 37 99.8 40 GTCTTTTCCTATCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : AGCGGGTGCAGTATTCCGTGTTTGAATGTCCTCTGGAGGAGAGGCTGTTGGAGAAGCTGTTGCATCAACGCTGGTTGGTGGTGTTGGAGATTCCTGAGGATAGTTTGCGGGTGTATCCGTTGGATGCGCGGGCAAAGGCTAAGACTCGGGTGTTTGGCTCCCCACCCCCCTATGAACCCCCGGATTTCTTGATTTTGTAAGGCTGGAATACCCAGGGGGTCAGGGATTGGGGCTTTGTGTTGAATTGTAACGATTTTCAGCGCAGGCCGCGATCCCTGAAAAACTGGGGTCTAAGAGGGGCTAGGGGACGTTTTTAGGTTTTTTTAAGGTTCTTAGGGCTTGACAGTTTCTCGGAAAGGCTGTAGCTTTAGATAGTGCGTTAATTCTTTGCTTTCAAGCCGCCTTTTCTCGACTCGAAATAGTCATGTAACAAAATGTTAAGGGTGTTCGCGCAAACGGACCTTGAAAACTCGACACAGCCATGGTTTCAAACCTATAGG # Right flank : AATTAATAATTTTTTACCCCGATCGCACCTCCTATCTCTATTGATAGAGGTTTTCATATAATTCCTAGACTATCCTAAACAGTATCTCAGGCTAAATCCCTGGTCATTAAACATTTTTGAGGCATTAGCTATAACTTATGCAATATCGAACAACCACAGGATGGTCACTTATCACTTCGGGAATTGTAACCCTCTTACTCAAAATTCTACCAGGCAATCCACTTTGGTGGGGAATTAGTTTTATAGTGATTGGAGCAGTCGTACTCTTCGTGCGAAAAACAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTTCCTATCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 7480-400 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000055.1 Geitlerinema sp. P-1104 NODE_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 7479 37 100.0 33 ..................................... ATGATAACAACCCCGTCGCGGAGGCTATCCCAC 7409 37 100.0 40 ..................................... ACCTTCACCTTGAAGGGGAACTCCCCTGCTATCTCCGCGA 7332 37 100.0 36 ..................................... ATTTCAAACGAACCCGTTGCGGTCCGGCGTCTCTAT 7259 37 100.0 43 ..................................... TTTTGTGCGGGTCGCAATTACAGCAACGGGGACGATTCGCCCT 7179 37 100.0 33 ..................................... CCAGGAAATGCGCGAGGCCACCCTAGCTTCGTT 7109 37 100.0 33 ..................................... TAAAACCACTCCTCTCTGGCAAATCCATTTGTT 7039 37 100.0 35 ..................................... TCTCGCCAATAAGTGGGGAAATGATGGCGAGCCGG 6967 37 100.0 36 ..................................... ATCTGGCTGCATCACTCCCACCCCCACGGGAACTGG 6894 37 100.0 35 ..................................... TTTTTGATTGGGTATCGCCACGGCAATGGTTCCAC 6822 37 100.0 35 ..................................... GGAAATAATAAAGAGTCGCTGCCTGCGGTGGCCAG 6750 37 100.0 36 ..................................... TTAAGTATCGCGATACATTGAGGGATTTATTAAACA 6677 37 100.0 35 ..................................... CTTAGAAATCTTGACTGATGCTGCGATCGCTCGTA 6605 37 100.0 35 ..................................... AATTTTCATTGTTTCTGTGGATAAAGTACTGGCGA 6533 37 100.0 35 ..................................... GCTCAGGTGGTGGTGGTGCAGGCGAACTCTACGAT 6461 37 100.0 34 ..................................... TAATCACGGAATTCCAAGACCCAGCAGGAGTCGT 6390 37 100.0 38 ..................................... AAAGCCGCAAATCGCGCCAGTAGGGCTTTTGGGAGATT 6315 37 100.0 37 ..................................... TTCTCGGTAATCTTGGTACAAATTGGAGGCAAGATCG 6241 37 100.0 43 ..................................... ATATCGAGGGCGTCTCCCTTGATTGGAAATTGACAAAAATAAA 6161 37 100.0 36 ..................................... ATGGGCTAATCACGATCAACATGGATCGGATCGACT 6088 37 100.0 36 ..................................... CCGAGTGACCCAAGAATGCTTTGAAGACCCTAGCTA 6015 37 100.0 36 ..................................... ATTTCTCAAATAATACTGGCGAGATTCACATTTCTG 5942 37 100.0 38 ..................................... AGGTAGGAATCCCGGAAGTTGACCCACTCGAAGGAGTG 5867 37 100.0 36 ..................................... GCCTGCATCCATACAGGCCCGCGCGATCGGACTCCC 5794 37 100.0 39 ..................................... CCGGGATCTTCGACGTAGGCGGTGAAGCCTCGGGATTTA 5718 37 100.0 34 ..................................... CGCTACAATAAAGACAGTTAAGAGGACAGATAAA 5647 37 100.0 37 ..................................... TCGAGAAGATGGCGGCGATCGTTGAAAACACTCTCCC 5573 37 100.0 36 ..................................... AACCCCTCGGGTAACTCCTCCTCTGGAGATGTGATC 5500 37 100.0 35 ..................................... TGTTGCTCACTCTACGACAGCCAAGGAAACTACGT 5428 37 100.0 38 ..................................... AATCTCCAAATCGGGACGACGGATATTCACCATATCAA 5353 37 100.0 35 ..................................... TCCTCACGGCAGCCAGCAATAGTGGTAGGGGGGGG 5281 37 100.0 37 ..................................... GTGGGAGAATGGGCGCGATCGCACCTGGGGAGAAGAA 5207 37 100.0 38 ..................................... CCCGGAGTAGGAATTATCAATGTCAGCGAACCCCGCAC 5132 37 100.0 36 ..................................... GATGCCTGCAAGGAAGGGAAGTTCGCCGGTGGCTTG 5059 37 100.0 39 ..................................... TTGGGCTACTGCCAACAGAGTTGTGGTGACGGCGGTGGC 4983 37 100.0 36 ..................................... AATACAAGCAAAATTTCGGGCATAAGCCTGAGTTAA 4910 37 100.0 37 ..................................... ATCTACGCAACCGAGGGCAGGAACCGACAAGTCCACG 4836 37 100.0 38 ..................................... ACGATGTGCCGTGGGCGATCGCGTCTAAGATTCTCCCG 4761 37 100.0 34 ..................................... AGACCGAGGCAAGGATTGAATTATTCGATTAGCT 4690 37 100.0 35 ..................................... AGAATTCGCGCCCCTAACCGCGCCGTCTCCCCAAT 4618 37 100.0 34 ..................................... TAGCGAACCAGCTAGGGTCGCTCCTGCGGAATTT 4547 37 100.0 40 ..................................... TGTTGAAGAACCAATCGCCAATCTGGCTAAAGGAAGTGGG 4470 37 100.0 38 ..................................... ACCGCTCGTAACGTCTCGCTCACCGCTCCAGGCGACCG 4395 37 100.0 35 ..................................... AATAAGCCCCGTTTCTTCCGGGTCACTGATTAAGA 4323 37 100.0 44 ..................................... TCCCCTTCTCGCCGCGATGAGCAAGACCCGAGGTCGGCTTTCAA 4242 37 100.0 37 ..................................... TCATCGTGAGCGCCCTTGGGAAACATCTGAAGTTCAT 4168 37 100.0 35 ..................................... ACACCTATCGTTAGGGTGTGCCGGAAGAACATACT 4096 37 100.0 37 ..................................... ATGAGACATATTCCCATATTCCGCAAACTCATTGCGT 4022 37 100.0 37 ..................................... ACTTTGCGTACCTGCTCGGGGTTTAGCTTGGCACGGG 3948 37 100.0 36 ..................................... GCTGACTCAGCCAACCCTCACGCCCCTCCTTTTTAG 3875 37 100.0 36 ..................................... CTGAAAAAGCAGTAAGTCGGACACTTCGGGATGCAA 3802 37 100.0 35 ..................................... CACGACAATGGCGCTGCGGTGTCCGTCCACCTCAA 3730 37 100.0 35 ..................................... TGAGCAGCTTCCCTTGCGCTCTTTCGGGGCAGACA 3658 37 100.0 36 ..................................... TCAGAAAGAATGTCGTCTTCGCGGAAACGATAGGCT 3585 37 100.0 35 ..................................... GAGCAAATGTCCCTAGGAAGGAAATCCCAACTTCG 3513 37 100.0 37 ..................................... CTGCTCCAAAAAGGAAGACACTTCAATGAGAGGTTTG 3439 37 100.0 38 ..................................... ATCCACGCTGGCTATCCGATAGCGATCGCCGGTGTTCC 3364 37 100.0 34 ..................................... AATTGTTCTTGAACGTTGACAGAAAACATGTTGT 3293 37 100.0 36 ..................................... ATTCAGGTTGAATATACTTGGTATGTCGGGCAGGAA 3220 37 100.0 36 ..................................... AGAACGGTTAGACATAGTTTCTCCTAGGGGTACGCG 3147 37 100.0 40 ..................................... ATTGGATTAGGTCTAGGTAGGAACTATTCGGCGATCGCTG 3070 37 100.0 35 ..................................... TCAAAAACCATACCATTCCTGGTGATATCGTCTTG 2998 37 100.0 37 ..................................... ATTATTGGCGGCATAGAACTGGCTAATCAATCCGTCG 2924 37 100.0 34 ..................................... AATTATTTGCTAGCACGGCATCCAGGGAGGAGGT 2853 37 100.0 42 ..................................... GTCCGGCCGCCTCGTCGGTGCTGTTGTCCGACTCTACCACTT 2774 37 100.0 38 ..................................... AGGATAGCGAAGCGATCGCTTCGCTGCGTGTGGAGACA 2699 37 100.0 34 ..................................... TTTTCGGCCGCAGACGGGTTTGGGATTCTCCAGA 2628 37 100.0 38 ..................................... ATAAAAACTGGCGAAGCAACTAGCGCCGTGTAGTGTGG 2553 37 100.0 36 ..................................... TCTTCTTCAGTTTCTACCTCAATATCAACATCTTCA 2480 37 100.0 38 ..................................... ACTTCATTCAAACACTAGGAGCCGGGCTATCTTTGGTG 2405 37 100.0 35 ..................................... CTTTAAAGGGCATCAGTTCACCCCCTGTGAACCCA 2333 37 100.0 38 ..................................... GAGGATACTACTGGCGAGAGCGATAAGGCTGCGATCGC 2258 37 100.0 35 ..................................... TTTCCCGGATCAACTCCTCGGCTTTGGTGGCTGTG 2186 37 100.0 36 ..................................... AGGGAATACTGGGAACAGTCTGATTCCCTACTGACT 2113 37 100.0 35 ..................................... ATCGCACGGGCAGAAGCCAGGCTAACCTCAATCGG 2041 37 100.0 35 ..................................... AAGTTCTTCCCTTTAGTCCCAGGGAATTGGTTGAT 1969 37 100.0 42 ..................................... TTCGGTTCGAGCCTGCTCTAATTGGGCGATCGCCAATCCTAA 1890 37 100.0 37 ..................................... GCTCCAGATTTTTCCCCTGGCTATCAATTGCCTGGAG 1816 37 100.0 37 ..................................... TTTGTATCGATTAGCGTTTCATCCAAAGAGATTGTCA 1742 37 100.0 33 ..................................... AATCCAGATAGATTTAGCATTCTCGTCATGATG 1672 37 100.0 35 ..................................... GTGCAGATTCACTACTACATCATCACCATTGTTGA 1600 37 100.0 34 ..................................... GCTACTGTCGCTAGGGATGCAAGTCACCGGACTA 1529 37 100.0 34 ..................................... ACCAGCCCATAATGCTTGGGGTGTTCCCCTCCAT 1458 37 100.0 38 ..................................... TTGAGGTTAGAGTCTTTGCGGAAGCGAACTTCTGACCC 1383 37 100.0 35 ..................................... ATAACACGGCCACCACTGCCCTAGCCGGGGGACAC 1311 37 100.0 36 ..................................... AGAGAGCGAGATTTAGACATGAGTTGATACAGTTCT 1238 37 100.0 36 ..................................... CATATTTGGAGCGTAGGCTTCTTCTACCCCGACCCG 1165 37 100.0 36 ..................................... GTCCAAGATGCGTCCGTGGAGTAGCCCTTGTTTTTG 1092 37 100.0 35 ..................................... GATAACTGGTCGGTCTGCCATCCAAAAGCCTGCGA 1020 37 97.3 35 ....................A................ CCCTGACTGGAGCGGCAACCAACCCTGCTCCCCTA 948 37 100.0 35 ..................................... TCGCGATCGCATCATCAGCCAAGCCCAGGAAATCG 876 37 100.0 37 ..................................... TCCCTTGGAAATGGCCCATTGGCACAAGCATTCTAAG 802 37 100.0 36 ..................................... ATCCCAACGTTTTTGACATGTTATCCGGACTTTACT 729 37 100.0 36 ..................................... CGGCTGCCCGAGTTTTTAGACACGTCGTGATTGCGA 656 37 100.0 36 ..................................... ACTAATGTCTACTTCAAACCCTTGTTCTCACCGCTT 583 37 100.0 38 ..................................... TCTGGGAGGGTAGATGCTTCTGTTTGTTGCACAAGCTC 508 37 100.0 35 ..................................... GATCGGGTTTTCCTCCAGGACTCGAAACTCGTAGG 436 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 97 37 100.0 36 CTTTCAAACCTCTAAATCCTGGCAACGGGATTGAAAC # Left flank : GCAACGAGATACGCTGTTCTATTTGATGGTTTACGATTTACCGGACAATCGCGCGGCGAATAAGCGACGCAAGCGACTTCATGATTTGCTGTCGGGGTATGGGACTCGGGTGCAGTATAGTGTGTTTGAGTGTTTTCTGACGGCTGTCCAGTTTGCGCGTTTGCGAGTGAGGCTCGATGAGTTGATTCAGCCGGAGGAGGATTGTTTGAGGATTTATGTGTTGGATCGGGGTTCGGTGAAGCGAACGATCGTCTATGGGTCTGACCGTCCTCGTCAAGTGTCGGCGATCGTTCTATAATGGGGGGAGGATTTTGGCGAACCGGAGCGGGGTTGTAATCCCTGGGGGGTTCGTCAAATCTTCAGAACCTCGGCAATTCAATAGTTTCGGCTTTTACGTTTTGTAGTATCTTGTAGTACGTTTGGTCAAATTCTGGGTTATGGTGTGGGTTCGTCATAGTCTATGGCAGAATAGGGGCAGGGCGGGTGTTGTGAGCCACAGC # Right flank : CGCCAATATCGAGGGATATTGAGCGAGGGGATGGGTTCAGCCAGAGGAAACGGCCAGGTCATGCTGCTGGGTTCGGGTTTCACTCATCGAGAAATATCTGATACTGATTGCGGCCGTGATGTTTAGCCGCATAGAGTGCCGCATCGGCGCGATCGATGAGAAACTGGGGCGATCGCCCCAAAGTGGGAATCACCGTCGCCACCCCCAAACTGAGGGTAACCCGCTCACCCAGAGGCGATTCCCCATGATGGATATTCCGTCGTGCTAACGCCTTCTGAATCTGGACCGCGATCGCCTCGGCCCCACAAGCATCCGTCACCGGCAAGACAATGACAAACTCCTCTCCCCCATAGCGAGCCAACAAATCCGCCGGACGTTTCACCACCTCTCGCAAAACAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCTCTAAATCCTGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1657-10814 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000072.1 Geitlerinema sp. P-1104 NODE_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 1657 36 100.0 35 .................................... GCCGTTTCCAGCCACGCCTGGTCCCCGCGATTCAC 1728 36 100.0 34 .................................... GTGAATTCCCTCCACTCCACTCACTTCAATGGAG 1798 36 100.0 38 .................................... GCCATTTGCCCGGAGCTCACACACCAGCTCTTTGATGA 1872 36 100.0 36 .................................... TCTCAAGATCGCGTTTCCACGTCTCGATAAAGAGTT 1944 36 100.0 34 .................................... GGCACAGAGGCACCGGGTCTTTGGGACCTGCCTC 2014 36 100.0 38 .................................... TTTATCCGGCCCCATCACCTGTTTGGCCTTTTCATGGA 2088 36 100.0 35 .................................... AGAGCCAACACAGGGGAGAAGGATGAGACCTTTGA 2159 36 100.0 37 .................................... GTTTGGTGGAGTAAACCATGGTATTTTGTCCTTTAAT 2232 36 100.0 37 .................................... GTCAGCGCAAACTCCACGTCCGCAGCCGTAATCTAAG 2305 36 100.0 40 .................................... GTGGAGATGGAGGTAGTGGAATTACTCATGATCAAGCAGT 2381 36 100.0 40 .................................... ATAAAGAGAACCCAAAACCTAAACTAAAAACTATCTCCGT 2457 36 100.0 44 .................................... TTCTAATGTGAACATATTTATTCCTGTTTTATTCCTGTAATGGT 2537 36 100.0 42 .................................... GTGTACTTCACGGGTTTCCAGTCCTCTTTGGGCATCGAGATT 2615 36 100.0 43 .................................... TGATGAGGTTGTACACCATCGTGGCCCGGCCCTCTCGACTCTT 2694 36 100.0 39 .................................... CCTTTCGGAGTGACGACAGAAATGACCGGTTGGCCGTAG 2769 36 100.0 36 .................................... AATAAGTTAATTATTAAAAGATATCTCCTTTTATTT 2841 36 100.0 36 .................................... AATCTTTGATGGACAGAGGTGGGAATGCAACCTTAA 2913 36 100.0 39 .................................... AACTGCCCCCGGTTAAAATGTACATTAGGGCCATAAGGA 2988 36 100.0 39 .................................... TATATTCTTTAAACGGTTTATCTTATCTTTCATAATTCT 3063 36 100.0 39 .................................... GAGGTGTTGAGAAGTGGACCGGGAAGCTCGGGCGGAAAA 3138 36 100.0 39 .................................... TCCGTTAAAGGAATGGCTGGACTGGCTAGTCCAAGTCCC 3213 36 100.0 36 .................................... GTGAAGAAGTTAGCCATGGTGAGTTTCCTCATTATT 3285 36 100.0 37 .................................... CGATGGAATCACCATCGGAGTCCCCCTCATTAAGCAT 3358 36 100.0 40 .................................... TCAAAGGCCATAGTGCGAGTTTGCGTCACCGCATTCCGCC 3434 36 100.0 40 .................................... TGTATTGGGGGGCTTCGCAGCTGTTGAAATCGAACATGGT 3510 36 100.0 43 .................................... ATTAGCGCTCTTCGACAGCTTATGTCGACGACCTTGCGGAGCT 3589 36 100.0 35 .................................... GGCGTTGGCGTTGGAGTTAGCCATGGAAAAGCAGT 3660 36 100.0 41 .................................... TTGGCCAGAGTAGCGAACATGAGACGGGTAAGGTTGTCCAT 3737 36 100.0 39 .................................... TTATAGATGTAATTTATATTTGCAAGGACATTGGGTAAT 3812 36 100.0 35 .................................... CTGCTCATGGCGTGAAGCAGATAGATCAAATCCCT 3883 36 100.0 40 .................................... TTGGAGAGGGGTGCGACCAAACCCTTAGTCCCGTTACGCT 3959 36 100.0 38 .................................... AGAGACTTGAGTCTAACTCCAACGCCAAAGCTTTTGGT 4033 36 100.0 36 .................................... ATCATCACCAAATAGCTGAAAATATTCAGGGAGGAG 4105 36 100.0 39 .................................... GAGACACCAACGTAGGTTTGCTTTCCATGCGTTTCGATG 4180 36 100.0 37 .................................... ATACATTGTTCCAAGTTAAGAGCACTCTAAATGTAAT 4253 36 100.0 38 .................................... AGGTTTTCACCCCAGCAACATCAGCAGTTTCTGACGAT 4327 36 100.0 38 .................................... AGATACACGCCCTTCGATTTGATTGTCGGATAAATTCA 4401 36 100.0 43 .................................... GGGGTTGAGGGCGGCCACCCCCGACTGCAGTCCGAAGACGCAG 4480 36 100.0 36 .................................... AGTGTTTTGCTTTTAGGAGCGTGAATGGCCGATACG 4552 36 100.0 38 .................................... GGGACGTCGTAATTCCCTGTAAACGACGGGTGGTGAAT 4626 36 100.0 44 .................................... AATCTGGGGGTCGGCCCCCCGGTTGTGGGCGCGATAGAATTGCT 4706 36 100.0 38 .................................... TTTTGCAAACCTGGCCATCTGCCTCCCGGTACAGCCAG 4780 36 100.0 37 .................................... CCCCCAACGGGATCTGACCCCCGTAAAGTTGCTAACC 4853 36 100.0 37 .................................... AGTGGCTACTACCTCGAACTGAGGCGCCAAAACCTCT 4926 36 100.0 36 .................................... TTGAACGCCCGCTCTGGGTCGTGAGCGTAAATATCT 4998 36 100.0 36 .................................... ATATCTGAGTTAGTATGCCTTGCGCTTGCCCTTCAC 5070 36 100.0 39 .................................... AAGTCCCCCTCTTTCGAGGTCCCCAACAAGCTTCCTTTC 5145 36 100.0 36 .................................... CTTCAGTTTCAGTTTCAGCTTCAGTTTCAGCTTCAG 5217 36 100.0 40 .................................... ACGATTGTGACGATCACAATCAGCCATTTTGGTGCGTTCA 5293 36 100.0 39 .................................... CACTTTCGCGGACAGGGAATCTGTCGCTATAAAGAAGAC 5368 36 100.0 41 .................................... AACTCCTGACTCCCCTGCTCCATAGCTTGGAGTTGTTGCAA 5445 36 100.0 46 .................................... CTGATAGTCATAGTATTCTTCCTCAAGCCCTATGACTAGGCTTAAC 5527 36 100.0 36 .................................... AGTAGGAGAATGGGTTGGGGATGTTATTCATCAGGC 5599 36 100.0 36 .................................... TCAAGGGGTGGCAGGAAGTTCCTGACTTACATTAGT 5671 36 100.0 35 .................................... AGCCGTTCCCAGCCCGCGAATTGGAAGGTATAGCT 5742 36 100.0 36 .................................... TCTACACGTTTAGAACGCCGACTCTTGCTCTGCAGC 5814 36 100.0 46 .................................... TATAACAACGCAATCCGGTCGAAGTGGTATTCGACTTGGCTGAGGA 5896 36 100.0 40 .................................... TCGAAGGAGGGGCCGGTCTGTGTGTTTTGGGTTTGGACTT 5972 36 100.0 36 .................................... TTGCATATAAGTCCTCCTACCCCAGTATGCCAGCGG 6044 36 100.0 36 .................................... ACCCGGTTTGCTTCTGCGATCGCCGCAGTCGGGTAT 6116 36 100.0 35 .................................... TAATTTTTCAACTTTAAATTTACCGCTATGGCTTT 6187 36 100.0 36 .................................... TCTTTACAATCCAAACAAAAGACTTTTCTGAGTTCC 6259 36 100.0 39 .................................... ACAAGCCATAGGAGGCGGCCACGAGAATCCCTAGGAACA 6334 36 100.0 39 .................................... AGTCCAGGCACGGCATCGATCGCCGGCTTGTTCTGGGGC 6409 36 100.0 39 .................................... TTCACGAGCTTTTCCCACCCGGCGAATTGGAAGGTATAG 6484 36 100.0 39 .................................... TGGGAGATGGCAATAAAACAAACCGTTTCAGGATGCTTT 6559 36 100.0 43 .................................... TGCAGGCTCCGCAGTGGACGCCCCTTTCTGAGTTTCTTGGCCG 6638 36 100.0 36 .................................... TGTGTTTCCGAATGTGCTGTAGATGAGTCCTCGAAT 6710 36 100.0 40 .................................... ACATGAACAGGAAAATCGTCCATTTTACGTGTATCAGCCT 6786 36 100.0 36 .................................... AACTCCCGCCCAAAAGATATTACGAGTGAACCTAGG 6858 36 100.0 36 .................................... CAATTTTTACCTTTCTCACTCTCATTTTCTCCATAA 6930 36 100.0 40 .................................... AAGAAAGCTACATCCCATTGATTCGCCGGGATTCGCTAGA 7006 36 100.0 37 .................................... AAGATGGGCAACTACTTCTCGCAAGGTAAATACGGTA 7079 36 100.0 39 .................................... AAGACTTTTCTGAGTTCCATTTTGGTATGCGCCACTAAT 7154 36 100.0 39 .................................... CTTTTTGGCGAGAGTTAGGCGGTTCTGGGCCTCCGCCTG 7229 36 100.0 40 .................................... AATCGCAGGACCGGAAAGGCCAATTAGAGCGACTTAACGC 7305 36 100.0 38 .................................... GTGAGGATCAAACTCTCCCTCTTGAGGAGAGTCAATGG 7379 36 100.0 40 .................................... TTCAGTACATCAGAAGTAATAAAACCACTCTGATGGAAAA 7455 36 100.0 36 .................................... CTTAGTGTGTAGGTATATATACACAGTGGTCAAACC 7527 36 100.0 39 .................................... CATCTTATCGATGCAGAGTTTGGTCAACATTGCCGCGAA 7602 36 100.0 40 .................................... CTGAGCTACGAGGGAGGCATATTCAATTCGACCACGTTGA 7678 36 100.0 46 .................................... CTGACTGATAGCCCTCAACCTGTAGATACCATTGTCGATATACCGG 7760 36 100.0 40 .................................... TTTTCATACGATACTCCTTATCGTTTATCACCTATCTATT 7836 36 100.0 47 .................................... TCGAGAACCCACAATAGGGCTGTTACCAACCCGATTGTTGTAACGAT 7919 36 100.0 35 .................................... TTGACACGGAGGATACAAGCTCGGAAGGCTACGGC 7990 36 100.0 37 .................................... TTCTAGGTGTAACCCTAGAACCTCATCCCCGTATCCG 8063 36 100.0 40 .................................... GACCGGGACCTCTTTCGAGGAGTCCCATTCCGCATAGAAC 8139 36 100.0 39 .................................... AGGCGCCCCGCTGCCACTCGTAGAATGGTGCCTGGGGAT 8214 36 100.0 39 .................................... AGGTGTTTGACCCCGGCGAGCTCGACGAGGTACGGAATG 8289 36 100.0 39 .................................... GTGCTTGTCACGGTTCCCTTGGGTGGTGCCCATGAACGG 8364 36 100.0 39 .................................... TCGATACCCTATACCTGGGGTAATCTTGGTTCAATCCTC 8439 36 100.0 38 .................................... GACTTTGGCCCGGGCTTTAAATCCCTCACCGTTTTCTG 8513 36 100.0 40 .................................... CAAGCCAGAGCGCTCGGCCCGTGTACTTGGGCAGCTTATC 8589 36 100.0 37 .................................... TGTATGTAGGCGTAGTTTGATAGCACGACTGCGGCAT 8662 36 100.0 37 .................................... ATGCCAGCTGGACCAAGCGGTCCTGCCCCTCCATCTC 8735 36 100.0 40 .................................... CAGGAGGCTTTGGGGTCCCCCAAGTAGGGTGTTTCCTCAC 8811 36 100.0 36 .................................... GACGGGCAAGAGGAATTTATCATCCTGCGCGTCAAT 8883 36 100.0 35 .................................... TTGTTAGACATGGTTTTCTCCTATTTATTAACCAA 8954 36 100.0 41 .................................... CTTCTTCGCCTAACCGGTTGCCAGGGAGGCTGGTCCGGACT 9031 36 100.0 40 .................................... TAGAAGAAAAAAGGCTATAGGTTGCTAATCTTGCATGGCG 9107 36 100.0 37 .................................... TTGACGACAAACTCGCGGGTTTCCCCCTCCTTTACCT 9180 36 100.0 39 .................................... CCGAAGCGTGGCGCCAAACCCTTTGTAGATTACCTTCTT 9255 36 100.0 39 .................................... TCTCCAAGTTATCCAAGACACCTGGAGTCCAGTGGGGGC 9330 36 100.0 46 .................................... TACCCCAGCATGTCGCAGGGGTCGACGTCCAGTAGGTACCCCAGAG 9412 36 100.0 40 .................................... TCGATTTCAGCCCATACCCCCGGATTTTCTTCCAACAGGA 9488 36 100.0 39 .................................... GAGTCCCACTGGCGTCGAATCTCATCTAGCTTTTTACAA 9563 36 100.0 42 .................................... TTGACGCTTGGCCTGAAGCCTCACGTCCTTGGACTGTTTACC 9641 36 100.0 39 .................................... CCGACATCCCGTCGGGGAGGGCCAACCCGGCCATATCAG 9716 36 100.0 35 .................................... TTGACTTTCCCACTCTAGCATTAAAACAAAGGGAC 9787 36 100.0 40 .................................... CATCGGGTGACGGCTGAACCAAAGAACTTTAACCATGAGA 9863 36 100.0 45 .................................... AAGGCGATCATCATGGATCGACCAGCCCACCTTGGGGAGTTCTCC 9944 36 100.0 37 .................................... TGGTTAAGGATCTCATAAACTTTTTCTTTACTTTCCA 10017 36 100.0 41 .................................... AAGTTCACCGGCCGCCGTTTGAGCACCTGATCCGTGCCAGG 10094 36 100.0 38 .................................... GCCGGTTCCCTCGGGGGTTGTGTTTTGGGCTTGGGCTT 10168 36 100.0 39 .................................... GTGCCGGGGATCACGATCGGCTGTAGCCGGGAACCCTTG 10243 36 100.0 36 .................................... AGAGAGATGGGAATTCCGTGCCGAGATAGCTAATAT 10315 36 100.0 37 .................................... TCCCCGTAGGTCGGATTCCTGTAGGTTCGCTCCCCCA 10388 36 100.0 51 .................................... CATTCTCCAGGTCGCAGTAGGTCAAGAGTTTTGAGCCAGCCTCCAAATTAG 10475 36 100.0 47 .................................... CTGATGTGTCTGCCCGACGTGCTGAAAAAGCAGTAAGTCGAACACTT 10558 36 100.0 40 .................................... TCCCCAAAAGCGGGCCCTATGTGGCGTAAGGTCCCTGCCT 10634 36 100.0 36 .................................... CGGTTGCTGGATGAGGCGAACCGAGATTTGAGCCGG 10706 36 100.0 37 .................................... AATATTCTCAGGCCGATATTCCGACGCCAGGTAGAAC 10779 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================== ================== 123 36 100.0 39 GTCTCCACTCGCTGGAGATGTTATTAGATTGGAAAC # Left flank : GGGCTATAGCCCCTATCAAATTCGCTAGGGTTGAGGAGAGTCATGTTTTTGTATTTGGTGGTGTACGATATCCCCAATAATAAGCGACGCCAAAAGGTTCATGATTTTTTGAAGGGTTATGGACAGCGTGTTCAATATTCGACCTTTGAATGTCTGTTACCTCGGGCGAAGTTTGTTGAGTTGCAGGACCGATTGCAGGGACGGGTGAATTTGGAGGAGGATAATATTCGCTTTTATCCTCTGTCTCGTCATACGTTGTTTCAGGTGCAGGTTTGGGGAGTTGGTCCCCCGGTGACGGAGTTTCCAGACTCTGTCATTATTTAGGGGCGAGGCTCGGGCTGAGGCTCTGTAAGAACGGCTTGCGGTTCTGAGCCTCGATGCGTTGCCGGGTCAGGGTTTGGGCGTTTGAGAGCTGGCTCGATAGGCGAGGCTGGGGAGGGAATTTCTTCAGCCTCGCACTCCCCCTCTGGAATGATGGCCCCATACGGGCTATAATCGGA # Right flank : CTTGAGTGCGATTCGTTCGCTGGCTAATACATAACCAGCGGGGAGAAACCAACCTAAGACGTTGGCTCCTAACTGACTCTTTGATGCAAGTGAAAGTCTTGCCCTGTAAGAGACACAGTGACTCCCAACCTGGCCACACCGACTGAACTCGGAATTTCAGAGAGTGAAGCTGGCAACTAGGCCGCAATCAGAGCCAAAGCAGATAGGCACACTGGCGGTAAAGGGGAGACAGTACGGGTAAACGGGTTCTAGAAAAGCGTCCTATCTATAAGTGGTAATCTGAACAAAAATACCAACTTCGACCGCGTAACCCTCACGGCATTTATTTAGTGATAGCCGTTATCTCTGAGGAGCGGTCGGGCGAAATGAACCGCCCTAACCTGCCAAAACAATCGAGAGGCGGAACGAATAAAAACGCTGACTGAGTTCAGGAAAAAGGTCGAACCCCTGATAGGCTGGACGAGCAGCAGAAACCTCAGCAGCGGGTAGGACGGAGTGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTCGCTGGAGATGTTATTAGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 17740-14180 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDP01000081.1 Geitlerinema sp. P-1104 NODE_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 17739 37 100.0 34 ..................................... GTTCCTCCTCATGGCAATTCAAATAATAATTCAA 17668 37 100.0 35 ..................................... GCCATGTCTTCTCTGGGGTGTGTGACGGACTGTGT 17596 37 100.0 42 ..................................... AGAAATAGCCGCAATTCCCCCCTCAGTCCACGAGGAAATCAG 17517 37 100.0 34 ..................................... TGTGGAAATGCTGCGGGCAAAGTCCCGCAGGAAC 17446 37 100.0 37 ..................................... CTCGGGCCGGTTCAATGAGGAGTTGAATCTGTTGCTC 17372 37 100.0 36 ..................................... CATTCTAGCGAGAGCAGATACTCCCGTTCGCGCTGG 17299 37 100.0 41 ..................................... TTGCTGATAAATCAGGCGTTTGAGCGCCTGGGCGTAAGCAC 17221 37 100.0 34 ..................................... GACTCGAACCAAGGGAAAATGGCTCTGGTAGACT 17150 37 100.0 37 ..................................... TACCTCTGGCTATCGGTTCAGATGCCTTTCCCAGATA 17076 37 100.0 38 ..................................... CGAGAAGAGTTGATCAAAGAACTGGCGACAGCGTTCAT 17001 37 100.0 36 ..................................... GAGGAGGCTGCGATCGCAACTTATAAAGGCTCTGGA 16928 37 100.0 38 ..................................... TTGGCGAGCTGGCCGCCCCGATACTTCTTGAGGATCTG 16853 37 100.0 34 ..................................... GATTCCAGATCCAACTTCCCCAAGGACTAGGAGG 16782 37 100.0 35 ..................................... CGCTGGAGAACTGGGCTGCCCAAAACCCAGAAGTA 16710 37 100.0 41 ..................................... GAGCGTTCCTCCAACTCCTCAATTCCGCAGATGTTGTCATC 16632 37 100.0 34 ..................................... TGTTGCCGGATCTCATTTTCCTGTTGTAGCCGAA 16561 37 100.0 34 ..................................... GATCGTCCCTCCAAGTCTTGATACCGATAAACGA 16490 37 100.0 36 ..................................... GCCTATGTTTCGGCTGAGGGGGTAGGTGAAATTTCA 16417 37 100.0 36 ..................................... GCCAGAGAATTCAAATTCCATACGATTAGCATCGAT 16344 37 100.0 35 ..................................... CTTTACGACCCCGATCAAGACTGGGTGGAAATCTT 16272 37 100.0 34 ..................................... TTGCCATTTTTGAGAAGATTGAAAAAGTTGAGCA 16201 37 100.0 34 ..................................... TTTCTACTTTGAAGCCCTCGTGTGGCTTATGGAT 16130 37 100.0 35 ..................................... TGCTGGGCTGCGGTGGATCACCGGAATGTTGATCA 16058 37 100.0 35 ..................................... GAAACATAAAGGATTAGAAGGATTATCGTAAAAAG 15986 37 100.0 35 ..................................... TGAGGAGGCTTAGACTGTCGCCACATGGCCACCTC 15914 37 100.0 37 ..................................... GAAGGATGAAGAAACAGAGTATATCCCTATCTGGGAA 15840 37 100.0 35 ..................................... CTTGGATCAGCTTGAGGATACTTTGAAATAAATTC 15768 37 100.0 38 ..................................... AGCTTCCGTGGAAACAATCGATTTTTGCCAACTTCTCC 15693 37 100.0 35 ..................................... CTATTTCTTGGGAGCCTTTTCGTCCCTCTGTTATT 15621 37 100.0 35 ..................................... TTTTCCGGGTATTTCTATTATTTCTTTCTCCCCGG 15549 37 100.0 35 ..................................... GTCGCTCCCATGGGGATTTCAGCGGCTGCCCGGGT 15477 37 100.0 35 ..................................... TGTTGCTGAATATATCCAGCTCGATATTTTCCACT 15405 37 100.0 36 ..................................... CGCCTCCAGTCGCTCCAGCCGAGTCTCTGCCACGTT 15332 37 100.0 36 ..................................... GAGGAAGATTCCGGCTTCATCCAAAATATAAACCCT 15259 37 100.0 35 ..................................... CCTGGTCGCCTTTCTTTTCCTGCTATTGATTGTGA 15187 37 100.0 38 ..................................... GGCAATTACGACATGGCGAAAGACACGTGCCGCGGCAC 15112 37 100.0 35 ..................................... TTGACAGTGTGCGAACTCACCCCCATGATTGCTGA 15040 37 100.0 38 ..................................... GCTGAAATTCAAAAATCCCATTAGATAATTGCTCCGAG 14965 37 100.0 33 ..................................... CGCCGTCAAAGGTTCCAGCGGGGGCAAACTCCC 14895 37 100.0 0 ..................................... - Deletion [14859] 14858 37 100.0 38 ..................................... GGTCGTCCTTGACTACCTCACCCAACCCCGGTATACTC 14783 37 100.0 34 ..................................... GCCTCATTTACGGCTATCCCCCTGAATCCCGAGG 14712 37 97.3 39 ..........................A.......... TTAGGGGGGAACTTTTTTTTTGCCTGTATGCAAACAATC 14636 37 100.0 35 ..................................... GTACCCCATTACCACTGTGTTTTCCCGGGGAGAAA 14564 37 100.0 39 ..................................... CGGTAGTTCGAGATGGTGCTTTGAGCGATGCCCGTCAAT 14488 37 100.0 35 ..................................... ATCGACAACGGATAAATCCGGAGATGCCACAGCAA 14416 37 100.0 35 ..................................... AGAAAGGCATAACATCTCAGGGGAGAAGAAATGTC 14344 37 100.0 31 ..................................... AAACCCATACGTGAAGCGGGTTTCAGGGGAC 14276 37 94.6 23 ...................................TG TAATAAAATCGCTCAGCCCTTTA Deletion [14217] 14216 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 50 37 99.8 35 CTCGCAATCCCCTAAAATTCCTTTGAGGAATTGAAAC # Left flank : | # Right flank : ACTGGCAGCCACCTCGAGGGCTTAAAGAACTGTGGGTTCACCTCGCAATCCCCTTGAGAGATTGAAATAAGTGGTTCTTCTTTTGCTATTTTTGCCTATATATATTCTCGCAATTCCCTTCTACTTTTTGAAATCTCATTTTAGAGAACTTACCCTCACAAAAAGTGTTGATTTCAACTCCTAAATAAGCCATTCTTAAAATCTTCCCGAAACGTGTTAAGCCTTTCTTGAAGCTGTTCAGTGAGACATTCGATGCGAGAGTCTTGACTGAGGCAAGGAGGTTGACTCGTTGCCACTTTCCGTAAAGCAATAGCCGCTCGGTTTTGTCTATTCTTATCTCTAATTTTACGAATAGGAGTTAGCAAGTCTAGCTTTTCTTTTGGATGATACAATCTAGATATATGACAAGGATTATAATCAATTCCAATAGATGCACACCAATCTTGCCATTTAAAAGGTAAAATCGTGGGGTTGGTGACAACCGGTATCCAAGGAACCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAATCCCCTAAAATTCCTTTGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //