Array 1 1590924-1592776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019659.1 Paenibacillus larvae subsp. larvae strain Eric_IV chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1590924 32 100.0 35 ................................ AATATGGAGCATCTGATGGAACTGGTTTAATGCGG 1590991 32 100.0 33 ................................ CCATATACCACAAATGACGCGACCCAGTTGATA 1591056 32 100.0 33 ................................ ATGAGTCTCTGTTTTGCAGTAATAGCCCGGGCT 1591121 32 100.0 36 ................................ GAGAGATTCTACCCGTTTTACTTCCGACAGCTTTTC 1591189 32 100.0 35 ................................ TTTTTCCACATCCTTAAACCGGGCAAAATATTCCG 1591256 32 100.0 39 ................................ ACATACGTTGAGCTATTCGCGGGCATCGGAGGATTTCGA 1591327 32 100.0 33 ................................ ATTTTCTCAAAAGTTTTCCCGTCAACATGGACC 1591392 32 100.0 34 ................................ TTCTTAGCCATGTAAATAATCCCCTTTCGCTAAC 1591458 32 100.0 37 ................................ TTCTCTTACATCAACAATCCCTTTATAAATAAAGAGT 1591527 32 100.0 37 ................................ CCAAAGCGTTAGTTCTCTTCGGTTTACTTTGTTTTTA 1591596 32 100.0 36 ................................ TTTTAATATCGCATTGCCTAATCGCGTTTTAAGATC 1591664 32 100.0 34 ................................ TCAAGCTCGGCGACCTCGGCTCTGCGTTGGTCTA 1591730 32 100.0 35 ................................ CCTTGGGCGTCGAAAAATTCAATACCCGTTTGCTT 1591797 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 1591864 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 1591931 32 100.0 38 ................................ TACAACGTCCCTTTTAGCTCCGTTTAGTTTCTCGTACA 1592001 32 100.0 33 ................................ GCTAATGGAAAACAAAGAGAATCATATATCAAA 1592066 32 100.0 34 ................................ CTTGAAAACTCCTGTTTTATTGTTCATCATGGAA 1592132 32 100.0 37 ................................ TCGAAGTAATCACTTCCAGCCCGGGATATCTTTAGGC 1592201 32 100.0 34 ................................ TCCAATTACCGGACAATGGCCAAGAAAAAAGAAA 1592267 32 100.0 35 ................................ TGGCCGCCCCTTGGATATTCGTACAACGCACTTTC 1592334 32 100.0 36 ................................ TAATTCAAGTGATACGACCATAGCCGCATTGATGTA 1592402 32 100.0 36 ................................ ATGTTTGCGTCAACGACGGCCTGTTGCTGCTTGCTC 1592470 32 100.0 38 ................................ ATTAAAAATTTACCAAGTCAAGCCATTGACTGGGGAGC 1592540 32 100.0 37 ................................ ATCCGGTGCATCAGAGATTGGCTCAACTGTATTTCAA 1592609 32 100.0 35 ................................ CATCACCGGGGTGCAGATTTATTGTCAGCGATTTT 1592676 32 100.0 38 ................................ ACCATGAGTTTGCAAAATACATTCAGCGAGAAAATCAC 1592746 31 78.1 0 ..............-.T.C...CTT...G... | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 99.2 36 GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTGTTAATTACTTACGATGTGTGTACGACCAATAGTGATGGGCAAAGAAGGTTGCGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGAGTCCAGGACTCTGTCTTTGAATGCAATGTAGATGCAGCCCAATTTGCCAGTTAAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGTTTTATCAATTAGGCAATAATTACAAGAACAAGGTTGATCACATTGGTATGAAAGAATCCATTGATTTGGAAAAGCCATTGATTTTCTAATGCGGATGCATGGTGCGAATGTGAAGTGCACATGAATTTCCTGGGACATTCGCACCATGCATTTACCATATAAATCCATTTTATTGTCTATAGGCATTTTGGGATTCATTCAAACTGAACAGAAAGATCATTTTTTTGAATGGTGTGATCAAAATATGTTTAGTTTTGAATATTTCTCTCAATTTTCGCT # Right flank : TGGAAATATTATTTCCACCCATACTTCCAGGTTAGACTACAAATTGATTTACAAGATAGTAATCGGGATACCTAATAACTCCAACATTTACAAGATGTTTACTGCTTGAGCTACTATCGAACCAATATTGAATATCAGTACCTCTTGTCAAATATAATGCCTCTGATTGGGCATCGTGATCAGAAAAATTCATGATTACTTGTTTGCAAGATGAACCGATTTCTGATGAACAATCTTGCTGGGTAGCTGCAGATGATGGAATTGGAATTATGAGTAAGGCTGCAAGAATAGAAAAAATAATTGCCATTTTGGATTTTACATGTTTCATCATATTCATATTAGCTTCCTTTGGTTTGAATTTTTACACCCTCCACACAATTGCAATCCTTCAAGCTTGATATATTGATAGAGGGTTCCATCCCTTCCTGCCACAAAACCACATTCACTCCTTTATTAGTCTATTATTGTAAATCGTTCTCCTTAAGATCTATTAACCTTCT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.00,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1990914-1992624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019659.1 Paenibacillus larvae subsp. larvae strain Eric_IV chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1990914 32 100.0 38 ................................ ATTTCTGTTGTACGTAGTGCTTTCAAACGTCCGGATAA 1990984 32 100.0 34 ................................ AGTCTCTGAACTTGTAGTGGCTGGAATCACTACA 1991050 32 100.0 36 ................................ CTTGATCTCAAGCTGAACAACGGTGATGAACGTCTG 1991118 32 100.0 35 ................................ TCAACATAATTTTGTTTTCTAATTAAAAGTAAATC 1991185 32 100.0 34 ................................ AAAAAAACAGTGAGCGGAATCAGAAAGCAAGCCG 1991251 32 100.0 35 ................................ AATGATGGAGCAATATAAACACGCAACCAATTATA 1991318 32 100.0 33 ................................ ACTTCTTTTTCTTCAAAGGTGACCGTTTTGAAA 1991383 32 100.0 35 ................................ AATATCCACGAATTAGGTTATACTTGACGTATCTG 1991450 32 100.0 38 ................................ TCGCAATCCGTGGAATCCAGTGGGAATCAGAAGAAGCC 1991520 32 100.0 36 ................................ AATATTAAGACCATGTAATTGATTAACATGTTTGAT 1991588 32 100.0 35 ................................ TCCCTACCAAAAGGAGGGTAGGATTAGTGGAAGTT 1991655 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 1991724 32 100.0 33 ................................ ATCTTGATTAAGATACAAACTATCAATTGTGTA 1991789 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 1991858 32 100.0 33 ................................ CTCACCGGCCCCTAGCGTCAGTTCGTTCCAGCG 1991923 32 100.0 34 ................................ ACAACATATCCTGATCAAGCGCGTTTAGTAACCT 1991989 32 100.0 35 ................................ ATTTTAATTTTCCGTTCCCCTCGTGTTGTTATCGT 1992056 32 100.0 39 ................................ AGATGCGGTGATCGTTACGCGAGTACGTAATTTGGTCAC 1992127 32 100.0 34 ................................ ATACGGCAATGAATATGGGCCTCAACAAGTTCTA 1992193 32 100.0 35 ................................ GCTGAACTCGATATCCATATCTGGAGATAACTCTT 1992260 32 100.0 33 ................................ GGCGATCAAATGGAACCCGGGGAAACAATTAGA 1992325 32 100.0 34 ................................ AACCATGTAAACGACGACTTTGCCGTGTATTCTT 1992391 32 100.0 37 ................................ CTCAACGCTTCCAGCAAAAATAAACCCGGTATTGCCA 1992460 32 100.0 36 ................................ ATCTCTCTATCATGGAAAAAAATAGACGAATAAAGG 1992528 32 100.0 33 ................................ ACACTGTCCGTCAGAAAAAACCGACTGTTCCAC 1992593 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 26 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATCTCCCTAAAGTTTCCAAAATGCTGGCTGCACATGTAAATTGTGAAGATTTCACGGAAGAAGTTATTGCCAAAGGGCTTGATGAGAGGACATTTGGATTGTGGAATTTTCCTTTCCCTTAAAGGTAAATATGCCATGACGTCTCGCGCTAGTAATGGAAGACGATATAGGGTATTATGGAAGTGAAAAAGAGTAGGTACTTTTATAATTGAACGTTACTGATACATCATAAAAAGTGATAGGGAAGATATATGTTTATCAAACATTATCCAGGTAACGAGTATATAAAGAAGCAATGATTTGGAAAGGTTTATTTTTTTCTGGTGCGAATGTATAGTTCACATGAATATCCCGGGAGATTCGCACCATTATTTTACCAAAAATATGCATGCATTTGGGTTAAGTATATTTGATTGCAATAAATTTGAATAAAAAAGTCATTAAATTGAATGATTTAATCAAAATACGTTCAATTTTGATTGTTTTATTCAAATTTCGCT # Right flank : TTTAGAACGGCCATTTCTGTTTTTAAATGGGCCAACATAGGACAGATGAGGGAAAACCTGCTAGGAGTGAAAATTAGTTAGCAAAAAATCGTGGAAGGAAACTCAATGTTGAACCAGTGACCGGATTAGCCCGTATGCTTCATGACATGGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1993272-1993841 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019659.1 Paenibacillus larvae subsp. larvae strain Eric_IV chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1993272 32 100.0 35 ................................ CAGAAGTACCCCTTGGGACATATGATGTGAAGATT 1993339 32 100.0 35 ................................ GTGAACAGACCTCATGATGACCAATAAATGATTAC 1993406 32 100.0 34 ................................ CATTTTAGTAACAAAACTGGAATAGCTTTCGATA 1993472 32 100.0 33 ................................ TCCTGATTCTATGACAACGTCAAAATATTTCTT 1993537 32 100.0 34 ................................ TTTCGTAATGTAAGTTTCATGTTTTCCAGACAAA 1993603 32 100.0 38 ................................ GTCAATATGGGATCGATAAATTTGGAGCGAATTGATAA 1993673 32 100.0 35 ................................ GAATTTGTAAAAGTTCTACAAGATGAAGATATTAC 1993740 32 100.0 38 ................................ ACCACAATATTTTTTAGGCCATTCCAAATGCCCTTGAC 1993810 32 90.6 0 ........A.........A............C | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 99.0 35 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : GGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCCCAGGAGATTCGCACCATCATTTTACCAAAAATATACAGATATCTAGTTGTGGTTATTTTTGATTGCAATCATTTTGAGTTAAAAGATCATTATTTAATCGATTTAATCAAAAAAACATTCTATTTTGATTGATTTGTTCAAATTTCGG # Right flank : CCTGGGCCTTCACCCACCCTAAGGGTGGGGGCTAATTAGTTGAGTCATATACGAATGAGCAGTCCGTTTTTTTACACCATCTAAACATACGAAGAACGGTATGTAGATATAAAAATGAGCTAAGAAAGATCAAGAACAAATGGCTTGGAAAGATTCAGCACTAAAACAAAATTCTCAAACTCTTCTAAAAATCTCATAAACAAAAGCATCCTCACCGACATTACTTCCACTCTTTTTGGAACGTTTTTTATGTATTCCCATAAGGGCGTCAAAGCATCAGCGAAAGAGGCAGAAAACACATCTTTGGAAAAAGTAGAGGCAGAAACCTTAAAGTCAGCAGTGGGCGGACCGTTTTCTAAGGCAAAAATTTGAGGGACCTATGTCTCTTAGAAGAGCTGTTATCAGTAGGAGGAGTGGATGCCAATGCGCTCGGAGTACCGGCTGACCAAATATCGCACATTCCTAAATTTTGTAAAAATTACTCCCTATTAATTGATCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2062855-2063890 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019659.1 Paenibacillus larvae subsp. larvae strain Eric_IV chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 2062855 32 100.0 33 ................................ CCAAGTCTGGTAAACCAATGTTGACCTGCTGGA 2062920 32 100.0 35 ................................ GGACAACTGGACATATCAAAATGATTGTAGAATTG 2062987 32 100.0 36 ................................ GCGAAACACCCCACCGTTAATTTCACGCAATTTCCC 2063055 32 100.0 33 ................................ AGACGGTACGTTAATCGTACCAATGACAAGGAG 2063120 32 100.0 36 ................................ ATTTTCCCATCATTATCCGTGATGGAGATTTTAAGC 2063188 32 100.0 34 ................................ ACCCAAAATCATTTTTTCTGTGTCGGACAGCTCA 2063254 32 100.0 34 ................................ TTGTGTAAAAAACTGATTTCGAATGAGCGCCAAA 2063320 32 100.0 36 ................................ CTCATAGATTAAATCTTCCATGCCAAACATTTTACG 2063388 32 100.0 38 ................................ CAGTCCCGCAACATGAATGGGACTTGTGGGCTCTTGAC 2063458 32 100.0 35 ................................ CATGATGATGTCAAAACGCTCAACGATGTCGCCGT 2063525 32 100.0 34 ................................ TTTCGCATCGGTCACCCTGCGAAAAAATACATAA 2063591 32 100.0 35 ................................ AATCAATTCAGATTTAGAGTGAAATAGGTCCTCAA 2063658 32 100.0 39 ................................ AAAAACTCTCTCACCTAATGCATTTGCTATTGCTAGCAA 2063729 32 100.0 34 ................................ CGGAAGGGAAGACCCTACTGAAAGCAAGGAAAGA 2063795 32 100.0 32 ................................ TAAAAAACGAGATGCCAACGGGTCGCCCGGAT 2063859 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 16 32 100.0 35 GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTTTTAATAACTTACGATGTATGTACGACCAATAGTGATGGGCAAAGAAGGTTACGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGGGTTCAGAACTCTGTCTTTGAGTGTAATGTAGATGCAGCTCAATTTGCCAGTCTAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGCTTTTATCAATTAGGAAATAATTACAAGAACAAGGTTGAGCACATTGGTGTGAAAGAATCCATTGATTTGGAAAAGCCATTAATTTTCTAGTGCGGATGTATGGTGCGAATGTGAAGTGCACATAAAATTCCTGAGGTATTCGCACCATGTTTTTACCATGTATATCCACTTTTTTGTCTATAGGCATTTTAAGATGCATTCAAACTGAGCAAAAAAATCATTTTTTTAAATGATATGATCAAAATAGGTTTAATTTTGAATGTTTCTCTCAATTTTCGC # Right flank : TTTTTTGCGTAGACTACGAGGTCACTCCCGCAGGTTGTAAAGGAAGCTCTGGAAACCAGAAACAAAGCAGCCGTGGCAGACGTTACGAGCTTGCCTCCAATATGCTACATCGATGGGTAAAAGACTATGAGTCAGGAAAATGAGGAGTGATTTCGGTAGAGGGGATTTGCCCTCTGGAAACAAAGAAGTTGTCCCAAGAAAATGACCACTTAAAACGGCTGCTAGGGGAAAAAGATCTTGAGATCGCTATTCTGCGTGACCTGGCAAAAAAGAAAAACCCTCACTTGCTGACAAAGTTGAAGTAGCCGAAATCTACATTCAACAGGGATACGCTATAACGCTCGTGCTACGTTTGGTGAAAGTCCCACGTTCGACTTATTATTACATGAAAAATAAAAAAGTCATGAAGAAAACAGTTAGTGAGGGACGTCCAGCGCCAGGGTATTCCTATCAAGCGAATGGAACAAAAGTACCTGATGAACATCAAGAATGGCTCATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2076846-2077759 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019659.1 Paenibacillus larvae subsp. larvae strain Eric_IV chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 2076846 32 100.0 35 ................................ AAGATCTTTTTGTTTTAATTCTTTTTGTATATCTT 2076913 32 100.0 36 ................................ AAAAAAGTCATACCAATCAATACCTTGTGCAACAAG 2076981 32 100.0 36 ................................ TGGAATTCTATTAGCGAAATCCAGTCAACGAGCATT 2077049 32 100.0 37 ................................ AACTCTACTGCATTGTCCGCGTTAATCTTAATCTCAA 2077118 32 100.0 40 ................................ TCATACCTTTGGCAATCATGTATTCACGGAAGCTTATAGA 2077190 32 100.0 38 ................................ TATTATTTGCGTCAAAGCAGCATGTAACTCTTCGGCCC 2077260 32 100.0 34 ................................ GTCATAAAGGAGCTGATCTAATTGGATGTTTTCG 2077326 32 100.0 38 ................................ ACCAGCTTCCGTATCCCAATCACAGCCATTATAGGCTA 2077396 32 100.0 36 ................................ TTTGATTTTTGTTGAATTGATCATTTTTTATCCCTC 2077464 32 100.0 33 ................................ GAAAAACAAATACAAAAATAATTACACCAAGAA 2077529 32 100.0 34 ................................ AGATTTCGGGACCAGCGATGACAAAACGTATGAA 2077595 32 100.0 37 ................................ CCTTGAAACTCCCAAATTGGTTAATTAAAAAGATCAC 2077664 32 93.8 31 .............................T.G ACCCGATGCCAGAGTACACTGCCCTCCCTGA 2077727 32 78.1 0 ..TA...........A..AGT..A........ | C [2077755] ========== ====== ====== ====== ================================ ======================================== ================== 14 32 98.0 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AAGCGAAAGACAGAGGGTACGAATGTTCATGCGGATTCAACGCTCATCGAGATCGGGTTGGAGCGATCAATATCATGAATCAACCTGTGGCAGATGGTAACAGTCTGTCAGCCTAAGATGCTATATGCACTGTCTTAGGACGGGCTGATGAGACAGCCCTGAACTTGGGGGAACTACGGTTAGCAGAAATGCATGACCGACTACCACCCAAGAATCCCAGTGATACCGAAGGTGTCAGCCGTGGGAGTCTCAAGTTATCAATCGATATAAGGCTAACGGGTGTAAAAGAAGCAATTGATTTGGAAGGTTCATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTATTTGAATGATTTAATCAAAAAACCGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : TAAAAACTAGAGGATTTAACCACTACCAACTATGCCGTTTCAAGCGATCGGACGGAACGACGCGAAAAGGCATCCTATATTGTTTAGGATGCCTTTTTTTCTCACTTTACCGCATAAGATTCCGCAGCGGTAAAAAGATAATATGCCAGACCTGTCTGCCTTGACTCCATTATATTGCGATGAAAGTCATCATCCAGGAAAAACCGGGCTTGTAAAGCAAAATCTTCAGCGCTTGTGGCATGAACATTCTGATTCAGAAAATTAATATGTTCCCTGATCAAGCCCCTAACGGTTTCGTCGTCAAATTTCATTCCGGCTTTGAGAGCTTTGGCCATTTCCTCCATAAAACGATCCGCCCGGGAAGCCTTTTCGTTCATATCTTTAACATCTATTGGCCTGTCTTCAAGAATATCCAAACCATAAGTCTCTTTCAAATATTCTTTGTGCTCGGCTAAGGCATTTTTCCATTTTTGTTCGCTTTCAAACCCTTTGAACATGCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3520460-3520036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019659.1 Paenibacillus larvae subsp. larvae strain Eric_IV chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3520459 30 93.3 36 ......T........G.............. TGTCGGATATCCGTCTGATTTTGATTTAATCGTCAA 3520393 30 96.7 35 ................T............. ACTGGAAATGGGATCTTGCAGATATTCTTTTGCGA 3520328 30 96.7 36 ................T............. CTATGGACCGCCGCCCGGTACTGGTCGGTTTTACTG 3520262 30 100.0 35 .............................. TAATTACTGTATAAAGCACAACCCGAACGCAATTG 3520197 30 100.0 37 .............................. GGCTGTGGGTGAGCCTGTCAATCACATACTTTTTAGC 3520130 30 100.0 35 .............................. TTGCAGAGGAGGATTGTGAAGAAGATGAATCAATG 3520065 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTTGACAGTAACACAAGGTGTATTGAAAC # Left flank : GTTCCCACCCGCGTATGCAGCCCATGTGGATACGATCCATTCCGGTACGCTTTTCGATTCTCTGTTCGTTCATAACGATCTGCTTCCACTTGTTCACTCACCTGTGCTTGTAAGACTTGGTTCAGTACAGACTCGAGCAGCTTGGCTACACCCGCATCCTGAGAATTTCCCAAAAATAGTTGATGCAAAAGCTGCGAATCTACGTTAATCTGGTATTGAGCCATTTCATAACACCTCATATATTTAGAATTTTGTGTCCCAACATTATTCTAACTGAGGGCTATGAATATGGCTCCTTTCATTTTTTGGAACCTAGCTTTTTACACAATTATACGGACTCAACTGTGGATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TGTCGGCAGCAAGAGTTCTGTCGGTTTACGTTGAATGTTGGCAGTAACACAAGGCGGATAAACCCTTAAAGTTGGACACGCACTCACTTAATCTTGCGGTTTCATTAAATTTCATTTAGACTCGAACTACTTTGATCGGAATCGCTTCCACTTGGTTCTGACTGTAAAATATCTCAGGGACCATATCCCTAATACTGGAATGAATTCTGTGTTTGTTATATTCTAACGTTCCATTTCTTGAGTGCGTTGATGAAATAAAACGAGGTAAAAAGTGACTCGTACAAAGAGTTATCAATTTACCTCGTTTTTGGATTGCATATCTATAAGCTTATTCTTGCATTATAAAACCATTTCTCATCATACTTTGGTGTATGAATTCCCTATATTGGATAATAGCAATTATTATTCAGAATAATTCAATTGAGGATGCCTTTGTTCCATGTGAGTACGCCTTTGTTCCATATCCATATGAGGATGCCTTTGTTCCATGTGAGTACACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACAAGGTGTATTGAAAC # Alternate repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //