Array 1 40280-39981 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820460.1 Peptoniphilus sp. HMSC075B08 Scaffold188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 40279 32 90.6 34 NNN............................. ATTTTGTTTTTTACCCCGCAACCGAAAGAAAAGT 40213 32 100.0 34 ................................ CTTTCCAACTCCTCTAAAAGAGCATCAGGATCTA 40147 32 100.0 35 ................................ AAGGGAATTAAAAACTTAACAATAGACTTTAAGGA 40080 32 100.0 35 ................................ GAGTTTAGTTTTTATCTTGCGTACTCTTTTACAAC 40013 32 81.2 0 .......C.TT.AC.G................ | T [39983] ========== ====== ====== ====== ================================ =================================== ================== 5 32 94.4 35 GTCGCACTCCCCGTGAGTGCGTGGATTGAAAT # Left flank : ATATAAAGCATAGCCTCGTCAAATCCACTCTCTTGTAGTCGCACTCCCCGTGAGTGCGTGGATTGAAATTTAAGAAAGAGGTCAAATATGGCTTAGTAACATTAGTCGCACTCCCCGTGAGTGCGTGGATTGAAATTCTTCCATCTTCAGCTAGTAATTCACTATCAAGCATGTCGCACTCCCCGTGAGTGCGTGGATTGAAATATTGTCATGACAAGAGTTGTAGCAGTAGCATTTGAGTCGCACTCCCCGTGAGTGCGTGGATTGAAATCTAATTTTTCAATGTTTTCAATTTCCCTTATGGAAGTCGCACTCCCCGTGAGTGCGTGGATTGAAATTGTGTTGACTGCATCCATAGATGCCTTAGATTTTTGTCGCACTCCCCGTGAGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TATCCAGAGACCATGATGAAAACAAAAAGGGGTGACCAACTATGAAGGTAAAGTTTATTGGTGAGTCTGATCCTATTTTTATGATCAATGGAAAGGTTTACGAAGTCATTAGTATTAAAAAGACTTGGTACAGGATTGTTGATGAAGAGGGGGAGGATTATTTATATCCTCCTGAACTTTTTGAAGTCATTGACGAGGGAGACGATTAAAATGGCAGAATATAAAACAAGCCCTGAACAATTAGCTAAAAATAGGGAGTATAAGAGAAAGAACAGAGAGAAACTAAAAATTCAAACTTACAGAAGTAATGGTTTACTTTATCTTAAAGAACACGCAGGTCTAGAAGATTTGAAGGAATTCAAAAAAATTATAGATGAGAAAGAAAAAGAATTATTAAGTGATTGATTTGTTGTTATGGTTCATGCGAAAAATTTATTTAAATCAAAGACAAACATCATTATGGAGAAATTAAAATATTTTAAAAATATGCCTATCCTAAA # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCCCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 40945-40442 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV820460.1 Peptoniphilus sp. HMSC075B08 Scaffold188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 40944 32 100.0 35 ................................ AGACCAATCTTAAAAGATTATCAAGATAAATTTGA 40877 32 100.0 36 ................................ TGTGTGAACTTGGTTGTTTGTGTAGACAAATGGACT 40809 32 100.0 35 ................................ ATAAAGCATAGCCTCGTCAAATCCACTCTCTTGTA 40742 32 100.0 35 ................................ TTAAGAAAGAGGTCAAATATGGCTTAGTAACATTA 40675 32 100.0 36 ................................ TCTTCCATCTTCAGCTAGTAATTCACTATCAAGCAT 40607 32 100.0 35 ................................ ATTGTCATGACAAGAGTTGTAGCAGTAGCATTTGA 40540 32 100.0 35 ................................ CTAATTTTTCAATGTTTTCAATTTCCCTTATGGAA 40473 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 100.0 35 GTCGCACTCCCCGTGAGTGCGTGGATTGAAAT # Left flank : TACAGGCCCTTTTATTAAACTCTTACCTAAGAGGAGATATAGAAGCCTATCCACCCTTTATGATAGGAGGATAAAATGCAAGTGCTAATTACTTACGATGTAGAGACGATAACGCCAGCTGGTAAGAAAAGATTGAGACAAGTAGCAAAAGTCTGCCTTGATTATGGACAAAGAGTACAGAACTCAGTATTCGAACTAAACATATATCCAGCTGACTTAGTAGAAATAAAAAATAAATTAGAGAAAATAATTGATCCCAAAAAAGATTCCATAAGGATTTATAATCTTGGAAAAAATTGGGAAAGAAGAGTGGAAAGTCTGGGAAGAGACGACACATATAACCCAGAAAAAGACTTGTTGATATTGTAAAACTTATGAGACTTGGACCTGGACATAAAAAACCTAGACCTAACTCACAAAAAACAAAGAAAAAAGAGACAAAACTCTTCCAAAAATGATTAGCTGTATTTTTTAGCAGGAGATAATGGCTAAAAAATGCA # Right flank : TGTGTTGACTGCATCCATAGATGCCTTAGATTTTTGTCGCACTCCCCGTGAGTGCGTGGATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTCCCCGTGAGTGCGTGGATTGAAATATTTTGTTTTTTACCCCGCAACCGAAAGAAAAGTGTCGCACTCCCCGTGAGTGCGTGGATTGAAATCTTTCCAACTCCTCTAAAAGAGCATCAGGATCTAGTCGCACTCCCCGTGAGTGCGTGGATTGAAATAAGGGAATTAAAAACTTAACAATAGACTTTAAGGAGTCGCACTCCCCGTGAGTGCGTGGATTGAAATGAGTTTAGTTTTTATCTTGCGTACTCTTTTACAACGTCGCACCCTTCACGGGTGCGTGGATTGAATATTATCCAGAGACCATGATGAAAACAAAAAGGGGTGACCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCCCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //