Array 1 896872-896268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016027.1 Halothiobacillus sp. LS2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 896871 37 100.0 35 ..................................... ACATGACGCTGCTCATGTTCGTATCTCCTGTCTCG 896799 37 100.0 34 ..................................... ATGTCCTAAATGGACGGTTGTTAAACAGGAATCC 896728 37 100.0 34 ..................................... CTTTTCAACCGAACCATTGACCGGAATGGTCTCT 896657 37 100.0 34 ..................................... GGTTGTGTCCTGTTGGGACGGTTGAACCGCTACA 896586 37 100.0 35 ..................................... ACGGCATGTCAGGCTTGCTCCGCGAACATCGATCG 896514 37 97.3 33 ................................G.... GTCATTCTATCGGCCCTCGTCGGCGCGCTGCGC 896444 37 100.0 32 ..................................... ATCCCCATGCCTCTTTGGCGCCGATGAATTGG 896375 37 100.0 34 ..................................... CAGAAGCATTGTACCACTCGCCATTGATTCGAAT 896304 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 9 37 99.7 34 GTCCGAACCGACCCTCCCTGCTTAAAGGGATTAAGAC # Left flank : AGCTTGCAAGCCCGGTTGGCCCACCGAGCCGGTCCGGCGTGATTGATGGCGTGATTGATGGCGTGATTGATGGCGTGATTGATGGCGTGATTGATGACGTGATTGATGACGTGATTGATGACGTGATTGATGACGTGATTGATGACGTGATTGATGACGTGATTGATGACGTGATTGATGACGTGAGTGCCCGTTGCGGCTGGGGCGAACCGTCAGGAGCGTGCGGGACGTTGGGCCGCAAGCGGGGCGGCGATTGGCGAGACGCTGGCGAGCAAGGGGCGGGTTACCCCGATCGGTCTATCGGGCCGGGAACGAACCGCTTGCCGAGGGGCAGGGCGGCGGGTAGAGTTAGGGGACGGTTCGGATGCGCAACCGGTTCGGAATCTTTCAAAATCCAGCAAGAACGACGGCTCAAAAAAGCTAACTTTTTTGCCTCATTTTGGTGCGGAAAAAATCCGCGCCAAGCCATTGATTCGAAATCATTTGGAAATATGACAGCA # Right flank : ACATGATGATGGCTTATCCGGACGAAAATTGGGTGACGCCAATTATCCCGTGATCTGATGCGAAACCGTGCCTTCGATATAACTTGCAAAAGCTCCTTATAGTTGGCGGCTTGGGCTTATAGGAATCGATTTACTCTTTTACCTTGGATGGGCGGAACAGATCACCATGGGGGGCTACATGATTGCTTCATATGGCAAAGGTAATACGAGCATCCATTGGTCAAGGGAATTTTTACGTCCATGGAAGTTGGGCTCCCTGGCTGTGGGGATCGCCCTTCTTCTGATTGGGTCTGTGGTCATGCCTGCGCCCGATTGGGATGTTGGTGTTAGCTTCACCATGGCAATCTTGACTTACCTGACGGCCCCTTGGTTTATTCATGTAATCCGTCGGCTGAATTGGAAGATGATCCCATTGGCACTGTTCTTCGCCTGGTTTAGCATTGACGGCTGTTACTGGCTGTTACTGGCTGTACTGGTCCATGGTCAATCCCGAAGCCTTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACCGACCCTCCCTGCTTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 903484-903094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016027.1 Halothiobacillus sp. LS2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 903483 37 100.0 34 ..................................... AGTTCGTTTGCGCTGTACTTGACAGCCGTTGCGG 903412 37 100.0 34 ..................................... TTCTCTGTTTGTTCGATATGCGCGCCCGGCACTT 903341 37 100.0 34 ..................................... GTAAGGCAGGCTCACAGATCCCCCTTCGCAGTCG 903270 37 100.0 34 ..................................... ATACTGTACGTTACCGAAGAGGTTTGTGAGGTGT 903199 37 100.0 32 ..................................... TGGACAGGTGAAACGCTGGCGCAGCCGGAGCT 903130 37 94.6 0 ................................T..T. | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 99.1 34 GTCCGAACCGACCCTCCCTGCTTAAAGGGATTAAGAC # Left flank : TTTCCCCGGAAGACAAGGCGCATGAGCAGGACCTGACCGAGGTCGAGGCCTTCCGTGCAGGGTTCGCGGAAGCACGCCAGCGTCCCTATCAGCCAGGCGGCAATTTCGAGCGCGAGCGGCTGGCCTTCATGGAGCGCGTGCTGGCGTGGACGGATCCGCGCAGCCGCCGGGCGGCCGGCGACCTGCTGGCCGAGACCCTGACCCGGCAATGGGGCACGCCGGGGAAAAAGGAACGCAAGCAGCAGATTCAGGAAGCCATCCGGGTGCTTCGAGGGGAGGAATAACGCCCCGATACCGTTCTCGGTATCGGCGGCCACCCGCTTGCGGTAGGGCAGGGCGGCAGGTACAGTAGGGGACGGTTCGGATGCGCAACCGGTTCGGAATCTTTCAAAATCCAGCAAGAACGACGGCTCAAAAAAGCTAACTTTTTCGCCTCATTTTGGTGCGGAAAAAATCCGCGCCAAGCCATTGATTCGAAATCGTTTGGAAATATGACAGCA # Right flank : GTTGCCGAGTACCTGTCCGGATTGATGGGTCGGACTGTTCAGGCCGCAAGTGACTGACCGGGGCCTTTTGCCGGCCCATGATCATGCTCCTGAAGTCCGGGGATTTTATCCGCCGTCCGTTGCTCGCTGGTATTCGATGTTCAGCCTTGATGCCCCGGGTCATGAGGCCCCCGGTCATGAAGCCGTGAGCCATGAAGCCGTGAACCATGAGGCCGTGAACCATGAGGCCGAGGGTTCGGAGCGACTGCGTCATTGGCCGGGCCAGACTCCGCCTGAATGCGCGCCCGGCGCTGTTCATCGAGCTGTTGCTTTACCCGCTTTTCATTGAGCGTCACGACGTAACTCAGCCCCAGGGCCGATGCGACGACCAGGACAAGCAGAATCAGCACTTCCAGGATCAATCCGCTCATCGCGTTATGCCTTTTTTCCGTTCCAGGGTCTCTGCCACCCTCTCGTCCTCGTCGACGGGCCAGCAAGCCAGGGCAGCAGCCAGGGCAGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAACCGACCCTCCCTGCTTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 1847068-1845697 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016027.1 Halothiobacillus sp. LS2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1847067 29 100.0 32 ............................. CATTAGTAAACCACGGCAGTCAGAAAAAGGCT 1847006 29 100.0 32 ............................. CATCGAGGATCACGCTAAATTCTTCTACGAAA 1846945 29 100.0 32 ............................. GATACCGTTAAAAGCCCGTTGGGATTGTTCGA 1846884 29 100.0 32 ............................. CGAGAATCACGCATCTTCACGGAGCAATGAGA 1846823 29 100.0 32 ............................. GTCACCGCAGTATTGATATGAGCCGGTTGTCA 1846762 29 100.0 32 ............................. GACGGCATCACGCCGGAGCAGGCAGTGAATGC 1846701 29 100.0 32 ............................. TGCCAACAGGATGCGAAACAGCGAGTAGGTCT 1846640 29 100.0 32 ............................. GACTGCAGAACAACGCGGCAAATTATGGCCTC 1846579 29 100.0 32 ............................. GTGCTTTCCGTCAACACCAATAGCCGGATCGT 1846518 29 100.0 32 ............................. ACTCCTAACGAGCGTTACGGCTGGATCACTAC 1846457 29 100.0 32 ............................. ATTATCATGGAAATGCTTAATTCCATTCCGTT 1846396 29 100.0 32 ............................. GGGCCGTTAGCAGAATTGCAAAATACAATCCT 1846335 29 100.0 32 ............................. TGCTGCTGCTGGTTGCGCCAGTGGGGTCACAT 1846274 29 100.0 32 ............................. ATCGCCCGATCAATGAGCCCATCGACCCAAGT 1846213 29 100.0 32 ............................. AGACCTTGGACAGGGTGCGCGAGAAATGGCGC 1846152 29 100.0 32 ............................. TCCTGAGTTGCCCCATGCCATCCTGGGCCAGC 1846091 29 96.6 32 ...A......................... GGCCTGACGCATTGGCTTGTGTTCATGAAATC 1846030 29 100.0 32 ............................. GTTGTACACCTGACCCTGGGCAATGGCCTTGG 1845969 29 100.0 32 ............................. GTCGAGCAGATCGACGCCGGCCAGATTGCCCA 1845908 29 100.0 32 ............................. CCGTAACCGAAACACAGGAACCGCCCCATGTC 1845847 29 100.0 32 ............................. ACTCATCGGGATTTTGTTGATATGGAGGGCGA 1845786 29 100.0 32 ............................. GGTGAGCAAGAGTGCGCCGGTGGTGTAATCGA 1845725 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : TGCGCTGCCGGGATATCTTCCGCGAGACCCGGCTGCTGGAGCGGATCATTCCCGGCATAGAGGACATGCTTTCCGCTGGTGGCATTGAGCGACCTACCGCGGCGCCGGAACAAGTCGAACCGGCCATTCCTGCATCGAAGGGGCTGGGTGATGCTGGTCATCGTGGTTGAAAATGCCCCGCCCCGTTTGAGGGGGCGTTTGGCTGTCTGGCTGCTGGAAATCCGCGCCGGGGTATATGTGGGCAACTACTCCGCTAAAGTGCGGGATTACCTCTGGAGTCAGGTTGCGGTAGGCATTGAGGAAGGCAATGCTGTCATGGCGTGGCGAACCAGCAACGAAGCGGGCTTCGACTTCATGACCATCGGCACCAATCGACGTATTCCGGTCGAAATGGATGGCGCTAAACTCGTTTCATTTCTGCCTGAGGAAAATAAGGAAATTTCCCGGTAGAATTTCCGGTGCTGTTAAAAGTCTTTTAAAACAAGCGTAAATGTTAAGAC # Right flank : GACGTGACGCCGGTCTACGTCGGCAATCCCGCCCGTTCCCCCTTTGCCTGCCGCAAGGCCGCGCCCGAGTATCCGTTCTTGCGTGAAATGCTGATCGAGTTTGGTGCTGCGGGCTATGTTGCTTTGTATGAAATCGAGTCTGGCGAGTTTGTGACGATTGTGGCCGATCGTCATCAGCGCGAGGATGATTATCACTGACGGATGCACCGCATCAGATGCGATCGAGGCCGGCGTGCCGATCTGGATTCCGGAGGGCGGGCAGCAGTCGGTTTGAATGAACCCAGCGAACCATGAATGGGGCTTGATCCGTCCCCCTACCCTACGTCCGGAACGTTTTGTGGTATGAGCACACGGTTCGATGCCCGGATCAAGCATCGATAGTCTAGCGCATTCCGTGGTGCCACGGGGGGTGCCGCGAGTGGCGGGGCGTCCATGCCCCGCGGGGTTGTTTCCTTCCGTCCGGTTCATCAACCCAGTTGCCCGATATTCAGTCTCAGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //