Array 1 2863-2222 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHS01000198.1 Gilliamella apicola strain NO8 NODE_198, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2862 29 100.0 32 ............................. TCTTGCTGCTCTTTAATTGATTCATCCCGTGA 2801 29 100.0 32 ............................. ACAGAGGATGAGCTACGGGCTGTTTACGCAAA 2740 29 100.0 32 ............................. AAATCAAATTTTACAGTATTATTTTGAGTCAT 2679 29 100.0 32 ............................. GACGAATTAGGGACGCCTATCAGAAAATTATG 2618 29 96.6 33 ............................A GATATCGGAATCCGTTTATCTCGTTGTTACTGC 2556 29 100.0 32 ............................. CAATGCGGAATTAATAAAATCAACATCTTGCG 2495 29 93.1 32 ............CA............... TGGGTTACAGAACATCAAGAAAACATAAAGGA 2434 29 93.1 32 ............CA............... CTCTGTTTGAGTTAGGAATTTTGCTAATGAAT 2373 29 93.1 33 ............CA............... TGGTGCAGACCTGAATAATGCGTCCCTTTATAG 2311 29 93.1 32 ............CA............... GCACTGCAGCAGATATCGGCGCCGAATCATAT 2250 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TCAGTATAAAAATCAATGAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAGATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGTGTAATTTTGATAACAACAAAGCACTAAAAACATCTCAATAAAACTTATTATTTTTTAACTGAATGAAAAATATAAGCTTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTACTTTAATAAAATCATAATGTTATAAATACTAATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGGAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CTTATTTAGCAACATAATCAATGGGTCCATATTGGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCATAGTGAGATAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGTATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTATTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1501-1228 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHS01000355.1 Gilliamella apicola strain NO8 NODE_355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1500 29 100.0 32 ............................. GACAAGGCGTACAAGCTTTCGGACGGGCGAGG 1439 29 100.0 32 ............................. CGTAATAGACCCAACCGATGTTGCAGCAACAA 1378 29 100.0 32 ............................. GTTTAGATAGACTCGATGCTTCGTCTAAAAGT 1317 29 100.0 32 ............................. TAAAAATATGTTCCCTTGATATTGACACCTTA 1256 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : GTTATAATTAGAGTGTTCCCTGTATACATAGAGATAAACCGTCGATGTGTTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTCTGTATTTCATTGTTTACTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAATTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTGATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : ATAGTAGGCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTGTAAAAAAAATATTGCTACCGCCATCGACCAGTTGAATGATTTGTGAGAAAAAACAAAATCGCCTGATGAAAAGCAACTATACCCTATTACCATTACAAAATTGCAGGGCGCGCAAAGGTGGGCAGTCAAGGCCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATACAACTAATATGTATAAAATATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGCGGTAGGATTATCACAGCGTCAGGGCAAGGGTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGATTTGGTTTCCTGTCCTAAATGTAGCAGTACTGGCAGAATCATAGAAGGGGCAAACGATTTTATTATCGATGGCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 94-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHS01000143.1 Gilliamella apicola strain NO8 NODE_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94 29 96.6 32 ............T................ GGAAAAATTATAAACGGAATATAGCTGACAAA 155 29 96.6 32 ............T................ GGTATTATCAGTGAAGAGGACTGGCGTGAGAA 216 29 96.6 32 ............T................ TGGTAACGAACGATTACCGCTAACAACTAATG 277 29 100.0 32 ............................. AATAGTACAGGAGATATAAAATGGAAAAAAAT 338 29 100.0 32 ............................. AAACCCTTTATCACGATTAATAGTGCGTTCAT 399 29 100.0 32 ............................. GCGCATCGGTATTTGACAGGGCGTTCATTTCA 460 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : TATAAATACTAATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGGAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGTA # Right flank : ACAAATCCATCACAAATCCATCACAAACAGCCCTCGTGGCGGTTTTTCATTGCCCTTAATTTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGAAAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAGGAAAATAATCTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5310-5098 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAHS01000179.1 Gilliamella apicola strain NO8 NODE_179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5309 29 100.0 32 ............................. CCATTTCACTAGATAACCTATTAGTTAAAACC 5248 29 100.0 32 ............................. AATTTGAAACGTTCCCGATATTGAGCTGATTT 5187 29 100.0 32 ............................. ACGAATCCGACGGCGATGGCGAGTGATTTTAA 5126 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : ACTTAGTGCAATGCCAACATAGTAACTTTTTGCTATTTAATAAATCCTAATTATATATTTCAAGGTATTATTATTTTTAATCTAATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTAACTATCTTTAATTTAAATTAACTAAATAAAAACATAGTGTTATAAATACTAATTTTATTGCAAATTAACCCCAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTAATGAAATGGATTACATCCCGTGGATAGCGGTATCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGCGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGACATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //