Array 1 136875-136010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039144.1 Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 136874 28 100.0 32 ............................ GACTAAACGTAGATTTTTTAAGTAATATTCAA 136814 28 100.0 32 ............................ CGAAACATGCAATTTGAGGGCTTCTGCGCGCA 136754 28 100.0 32 ............................ ATGAAAATTTGATGGCTGTTTGATGATTGGGA 136694 28 100.0 32 ............................ GGATGAACAAACATGCTTTTCAATTACTGCAA 136634 28 100.0 32 ............................ CATATGATTGTTTATATCGTTCCGTTTGACGA 136574 28 100.0 32 ............................ TTAAAAGCATTTAAAAGCTTTTCTTTTATTAA 136514 28 100.0 32 ............................ AGCAGAAAAAGCAGAAAGGAAAATAGCACTAG 136454 28 100.0 32 ............................ CCCCCTTTCTGCAACGTCACCCCCTTTTGTCT 136394 28 100.0 33 ............................ ATGCAATTATTAATTCATACAAACGGATTGCAT 136333 28 100.0 33 ............................ TTATGCTTGGTGGACAGCAATTTGTTTTACTTG 136272 28 100.0 32 ............................ TTTTGCCTGGTACACATACTTAACCTGGGCCA 136212 28 100.0 32 ............................ AGGGGCCAGCCGAACAAATTAAATTAGCAAGA 136152 28 96.4 32 .......................T.... GTCAAAAGTTATGGAAAAGTTTTGAAGCTTGG 136092 28 100.0 27 ............................ TTTGTAAAACAAGTTGACTGTTACTTC 136037 28 75.0 0 A..........A.C......T...TTC. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.1 32 GTTCACTGCCGTATAGGTAGCTTAGAAA # Left flank : TCTGAATATTGACCAATGGTTGAAAAACCTGGTTGATGGGGATTATGTGCATATTACGTCGATTAAAAGCGTACCGGCAGAAATTAAGGGCTACGCTTGTTATGGTAGAAAGCAGACGTTTAACCAATCTTATATTGCACGTTTACAACGGCGAGCTAATGCAAGAAATAAAGGAGAATCTTCTTTAGCTTCGACGACATTAACTGACTTACCGTATGTTCAGCTCGAAAGTTACAGCACTCCGACTGAATTAGAGGGTCAGCGTCACGGATTCACGCTTCATATTGAAAAAAAACTGGTAGATAAAAATGAGAACTTCGTTTTTTCTACCTATGGTTTAAGTTCGGAATCAGCACTTCCAGAATTTTAACCATATAAAAATCCACTCTTTAAAAACTTAGTTAATACAACACCTTATAATAAGGGGTTAAAAATTGGGTAGTTTTGTTATCTGATTCTTAACCCTTTATTATTAATGGTGTTTTCGTTATATTTTCACA # Right flank : ATCATTTTTTCTACTGAAAAAAATCTTACGCTTACCTGGTTACAGGTATTAAAAAGGGTCCATAACGGCCCCAAGCTAGTTAAAATTCAATATCAGCATAAGTGTAATACGTGCCATCAGCTCTAAACTCGCACAGATTGTTCAGTACGAAGCTTCGGCGGTACTTAGGGCATTTCAGTTTACTACGATTGCTATGCAGCTCTCTGATGAAATGGCTGTTATTGATACACGCATGCAAGTCCTTCTTGATCGCTGCACGAGCATTGGCAATGTCTTGAATGAACCCTTTATGCTCCGCATCCATTACGTTCTGAATGGCTATTTGCTGAATGTCATCAGGCAACTGATCTAAGACAAACAAGCCGTGTGCAGTTAAAAAATCTTGGTGTTGTGCTTGAATATTCATTTTTATAAACCCTATCTCTAAGCCTTTAATCCGGTGACTTTCCGGTTGAGCAAGCTGCTCTTCATGCAATTAATTATCTCTTAAAACATGGCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 902367-904075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039143.1 Acinetobacter sp. 10FS3-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 902367 28 100.0 32 ............................ AACTCAACAAGGATGGAAAGAAGTATTTGAAA 902427 28 100.0 32 ............................ TCAAACGTGGTGGCTTGGTGATCCTGATTCAT 902487 28 100.0 32 ............................ TTAAATCGGTTTTTAGCTCTTGGAGTTCAACA 902547 28 100.0 32 ............................ AATTGCATCAGAAATGAATTCAGTCGGAACAA 902607 28 100.0 32 ............................ TACAACGAGCTTCTAGAAATGCAAAGCTTATC 902667 28 100.0 32 ............................ GTGACATTTTAAGAGCCATTAAAAAGCTAGAT 902727 28 100.0 32 ............................ TAGAGATGGCTAAGCAAGGCATACCACTAAAA 902787 28 100.0 32 ............................ TTCATGCTGCATTAAAAAGGTAATTGCGTCAT 902847 28 100.0 32 ............................ TTATTGGTATCACGATCAATATGCTGTCCACA 902907 28 100.0 32 ............................ TAAAAGCATTTTTGCTTGCTTACGCACCGACT 902967 28 100.0 32 ............................ ACGTATGCAAGAATGTAGGACAGTTTGATGAT 903027 28 100.0 32 ............................ AGCCATTATCACCCCGCAATCGACTACCTAAG 903087 28 100.0 32 ............................ TTGCACACTGTAAAACAAATTAATTTTACCAA 903147 28 100.0 32 ............................ GCGTGCAGATTTACTTTGATCAATCCAACCGT 903207 28 100.0 32 ............................ ACAAGCAGAAAAGCAGGGCGTGGAAGAAAAAG 903267 28 100.0 32 ............................ GAAATGTCTAAGTATTCGCAAGGTACGGAAAG 903327 28 100.0 32 ............................ TTTGGGGTATGAATCGCCCATGTGTAGGCATG 903387 28 100.0 32 ............................ CATTAATAAGTGCAAGTGATTAGGCTGATTAA 903447 28 100.0 32 ............................ TCAAGTAGTTTTAAATAATCGTTTCTCATAAC 903507 28 100.0 32 ............................ GTTCACTGAAGTCATAATTCTGGTATTAAAAA 903567 28 100.0 32 ............................ ATAGCCCCACATAAGAAGCGCAGGACCCGCTT 903627 28 96.4 32 ................T........... ATAATCGCAGTACGAGTCTCGACTTTGGTAAT 903687 28 100.0 32 ............................ TAAATCAGATATCAGCCCGTTTAGCGATTTTT 903747 28 100.0 32 ............................ TGTCGTTATCAGAGTAGCCGTTCGGGTAGTCT 903807 28 100.0 34 ............................ TATACGCAATAGGTTTAGTTACAGAGCAGTATAA 903869 28 100.0 32 ............................ GATGGAAATGGAATATGTTGGCCATCATGTGC 903929 28 100.0 32 ............................ TTGTCCAGATCTGCTGGAATTAAAATCAGGCC 903989 28 100.0 32 ............................ ATGCACCAAAGGCAACTGCCAGTGCAAGTAAG 904049 26 92.9 0 ........--.................. | C [904074] ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.6 32 GTGTACTGCCATATAGGCAGCTTAGAAA # Left flank : TGATCATTGGTGCCTTTGTGGAGGCTCGTTCTTGTGAGCGTTTCTATGCACTTGCACCTTTGGTCGATGAAGAGCTGGGCCGTTATTATCGTTATCTGCTGAAATCCGAATCTCGCCATTATGAGGATTATCTGGCACTGGCGATGGATGTGGCAAAAACCGCAAAATGGAAAAATCCAGAAGAGAATATCCAGAGCCGTATTGAGCATATCCGGGAAGTAGAAAAGAATCTGATTTTAAGTCCAGATGAGCTTTTTCGTTTTCATAGTGGTGTGCCCGTACAGGCAGCATAAGTTTGACATGATGCAAGCGGGACAAAGTTCCCGCTTTTTCTTTGGGCTGAAGTTGATTAAATAGAGGCTTTATTTAACCCAAAATATTTTAATTTTCTAATTAAATATAAAAATTAGAAACTTATAGATAGATAGGAATAAGAGGGCTATTGGGGTGTATTTTAGATAATACTATGTTTTTTATCTGGTTTTAGGTATTTTGGTTGT # Right flank : AGCGAGTTGATGATTTTAAGGTCGCTAAAAGAAGGGAGGGCATAAAATAGAAAATAAAAAAGCCCGCTTTAATGCTGCGGGCTTTCTTGAATTTGGCTCTCCCACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATGGGAGAATCTGCATGCGATTATAGAGACATTTTGACAAGGGTCAAGCAAAAACTTTCATATTTATGACAAATCATATTTATCTGATTTTAATTTAAACAATTGCATAAAAATATTGAAAAATACTTGTCAGGAGAATATCCAGTTGCTAGATTGAATCCATAAAGTCGTTTGATCAAATGGTCAAACAGTGTGGATTTAAACCGACTTGCCAGCACAAAAATGGCTAAACTGGAGAAAGCGAATGAATACGCTCACAATCCCCCAAATTTTCGCGCAGTGGTCTTTCTATCAAGAGCATTATCTCGATATTATTCAAGATTCGAGCCAATATTTTAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1907105-1899035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039143.1 Acinetobacter sp. 10FS3-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1907104 28 100.0 32 ............................ GGTAACAGATTCATCCACCATATTTTCATAAC 1907044 28 100.0 32 ............................ CTTTGGTGAACGGTTGAGAGAGTTTCGGCAAT 1906984 28 100.0 32 ............................ TCCTAAACGACCTTTACTAATCTGACGCTCGA 1906924 28 100.0 32 ............................ AAAAAGAAATGGCAGTAAAAAGAGAGGCATTG 1906864 28 100.0 32 ............................ TCCCACTCCTGAACCTGAAAATACTCATCAAA 1906804 28 100.0 32 ............................ AATCTAAAATCTTGCTCATAAATAGCACCTTT 1906744 28 100.0 32 ............................ AGATTCAAAATCAGAAGCAAAAACTTATTGAG 1906684 28 100.0 32 ............................ TTTTTGGTGTTTCTTTTGGGTAATGTACTTTC 1906624 28 100.0 32 ............................ TTGCAAGGTAAGGGCGGAGTCGGAAAATCATT 1906564 28 100.0 32 ............................ TGTTTCTTTTTGATTTTGGCTTGCAGCAGTCA 1906504 28 100.0 32 ............................ AGCAGCAGCACAAATTTTGATTACTTTCAAAA 1906444 28 100.0 32 ............................ ATGCTGAAAAGAATTGTCTTGTAGCTGGAAAT 1906384 28 100.0 32 ............................ GTTCGAGGGGCAAAAATAATTTGACAAGCCAT 1906324 28 100.0 32 ............................ TTGCGCGGTGTGCAACTAGAAGCCGCAAAAGA 1906264 28 100.0 32 ............................ TCGAAGTTCAGCGACAATCTGCGCTGTCGTGT 1906204 28 100.0 32 ............................ CACTGGAATGCGAACGGCTACAAACATTCCCT 1906144 28 100.0 32 ............................ TTACCAATACCTCCACCAGATTGAATAGTCGC 1906084 28 100.0 32 ............................ AAGCAAACAAGCTAAAAGGAAATGAAAATGAA 1906024 28 100.0 32 ............................ TAGAGCATCAGAGATATGATCCAGTCCAGACT 1905964 28 100.0 32 ............................ CGTGACACATCGGGAGCTTGTGACAATATGCC 1905904 28 100.0 32 ............................ GCTCTTAATAATGGCCATAGTATGCAAGCACC 1905844 28 100.0 32 ............................ TATACAATCGCAAGCACAGGCAAAAAATCATT 1905784 28 100.0 32 ............................ AACAGAAGCAGCCACAAAGGGCATGAACAAGA 1905724 28 100.0 33 ............................ CATACCAATCAGCAAATGTTCGCCGGATTGTAT 1905663 28 100.0 32 ............................ TTGACGAATCACATAAACCGCTGCTGCCATTT 1905603 28 100.0 32 ............................ TTATTGTGGTTTGCCCATACCATGGTAAATTC 1905543 28 100.0 32 ............................ GATGGCGTAGTGACCGAGAAAAGCGTTAAAGC 1905483 28 100.0 32 ............................ ATTAACGCAAATCCTGAGCGCTTAACACCGTT 1905423 28 100.0 32 ............................ ATGTCGCCAAGCTTTGTCATGTCTTCATAGCG 1905363 28 100.0 32 ............................ ATTTGTACCAATTGAGAACATGCCACGGGGGA 1905303 28 100.0 31 ............................ TGATGCTGAGCCGATTAATAGGCAGTTGCAT 1905244 28 100.0 32 ............................ TTTATGGACAATACCAGCGGGATCGTATTTGC 1905184 28 100.0 32 ............................ TAGAAAGTATTCATGGAAAAAATAGCAACCAA 1905124 28 100.0 32 ............................ GTCGTGGGCCATACCTGCAATGGTTTGACCGG 1905064 28 100.0 32 ............................ TGATGCTGAGCCGATTAATAGGCAGTTGCATG 1905004 28 100.0 32 ............................ TTCCGCTAAGGTTACGTTTATTAATTCAACAG 1904944 28 100.0 32 ............................ ATAAGCTTTGCGTAATACTCCTGACAGTGCGG 1904884 28 100.0 32 ............................ TCTCGACTCTCGGAGGCATATGCCAATCACTC 1904824 28 100.0 32 ............................ ACAAAGCCCAGGCGGTGCCGGAAGGGTTTGTT 1904764 28 100.0 32 ............................ TGAAAATGCACACCGATTTCGGATAGGTGTAA 1904704 28 100.0 32 ............................ TATAGGATGCTTTATCTGTAATTAATTGTAAA 1904644 28 100.0 32 ............................ TCTGAGGGTTTGAATACCAATGGTGACTACCC 1904584 28 100.0 32 ............................ TGACAGAGATTGGGTAATCAGCTCAAGTTGTG 1904524 28 100.0 32 ............................ TTTGTGAGTTCCAGTGGAGTAGGGAATAACCA 1904464 28 100.0 33 ............................ AGTGCTTGCTGCATTGAGGCATGAGGTTGAATT 1904403 28 100.0 32 ............................ TGACAGTGCGGAATCTTGTCTTTGATCTTCTG 1904343 28 100.0 32 ............................ GTATTCAGAAGTGAAAGCGACTGCAAAATCAA 1904283 28 100.0 32 ............................ TCAATCAGAAAATGCACACAGTGATATTTCTC 1904223 28 100.0 32 ............................ GGGTAAACCGCGAACGCATTAAAGGCCGTGTT 1904163 28 100.0 32 ............................ AAGACGGACGGCCTTGGCGGAGCTAACCGGAA 1904103 28 100.0 32 ............................ GACTAGATCGCACCATGTTCAATGCCGTATTT 1904043 28 100.0 32 ............................ TAAAGAAAAGTAGACGGAAAACAGACCTTACA 1903983 28 100.0 32 ............................ AGAATACTTACGCTCAGTACGAACATCGGTTT 1903923 28 100.0 32 ............................ AACCCAAATGCTATTACTGAAATGAAGGTGAC 1903863 28 100.0 32 ............................ GTCTACAGCTTAGGACGCTTTGCATTCCCTAT 1903803 28 100.0 32 ............................ TAATACCTAGACAAGCGCAATCATGCGAAAAA 1903743 28 100.0 32 ............................ TTTGGAACGCATGGTCTAGCTTGGGTTCAACT 1903683 28 100.0 32 ............................ TGTCCGTTTCTGTGTTTTTTTCAGGTGGCGTT 1903623 28 100.0 32 ............................ GTATGCCACGATTTCAGGGCTAAATACATCAC 1903563 28 100.0 32 ............................ GCAACGGCGCTGTATAAATCATCAAACGTGGA 1903503 28 100.0 32 ............................ CAAACACCCAGGTCATCGAATGCCGATTTACG 1903443 28 100.0 32 ............................ AAGAGAAATTACAAGCGCGTGAAGCTGAACTT 1903383 28 100.0 32 ............................ CGAAGCCTTTACGGTGTCAGCCGTTGCGCTTG 1903323 28 100.0 32 ............................ TATATCGAGCATACAGAGAGAAATAGACATGC 1903263 28 100.0 32 ............................ GTTAGCAGACCATGCCATAGTAAACGAGCCTG 1903203 28 100.0 32 ............................ TGCTAGCAAACTCCGCACACCCGTTACAATTG 1903143 28 100.0 32 ............................ TCAGAGCCGAACTCGCCCAACACGACACATTA 1903083 28 100.0 32 ............................ TGCAGTTTGAAGCCTTTCTTCGCTACTGTGAA 1903023 28 100.0 32 ............................ GTTCAGAATGACACTGTTGATGCAATTTGTTG 1902963 28 100.0 32 ............................ AGAGCGCAAGGGAATGGCGCGCTATATTTAGC 1902903 28 100.0 32 ............................ ATGACGTTTTCCGTGATAATACAAAGCGCGAG 1902843 28 100.0 32 ............................ CCTGCATTGATAATAAATTCAGTCATCTTTCT 1902783 28 100.0 32 ............................ AGCCAATACATTGGTATTGTCAGACGCATCAT 1902723 28 100.0 32 ............................ AGCTGGGGTCGCTTTCAATTGATGGGTGAAAA 1902663 28 100.0 32 ............................ TTACTATCCGTACTATCAACGACTTTATTAGG 1902603 28 100.0 32 ............................ AAACCAATCATGATACGGTCCAAAGCAATTGC 1902543 28 100.0 32 ............................ GAAAGCCGAAGTATTTTAAACATGTACTGTTT 1902483 28 100.0 32 ............................ AATGACGTTTGCTGTTTGTGCTGCTTCATCTT 1902423 28 100.0 32 ............................ ACACCAGATGAGCGTCCATAGTTACGCCAACA 1902363 28 100.0 32 ............................ ACGTATCGTGAAATGTGGTCGTCTGGTCAAAT 1902303 28 100.0 32 ............................ TTTCTGTTCACGTAGGCGTTTACGTCTTGGGG 1902243 28 100.0 32 ............................ AATCACTGCACCAAACAGTGCATCACCATTCA 1902183 28 100.0 32 ............................ TCACCTTCCGTCAGCGTATTACAGACAGCTAT 1902123 28 100.0 32 ............................ ATGAGATAGCCAAGGCGTGTCCATTCACGTTG 1902063 28 100.0 32 ............................ TTGTTGTTTTGGGGGGGGCTTCAACAGACCCC 1902003 28 100.0 32 ............................ ATTCATTTTTTTTGCTTATCGGGAGATAAAAT 1901943 28 100.0 32 ............................ ATAATTTCGGGCTAGATGAAAAAAGAGTTTTA 1901883 28 100.0 32 ............................ ATCTGGCGCGTTCTTGCGGATTTCTTCTAGGC 1901823 28 100.0 32 ............................ AAAAACCTAATTCATTTGGTCGCCCAAGACGG 1901763 28 100.0 32 ............................ GTCAATGTGTGGATATAGCAGGCTAGTGGCTA 1901703 28 100.0 32 ............................ ACGAAGCGAATTGGAACCGCTACCAAGCATAT 1901643 28 100.0 32 ............................ TCCAAAGGCGGTCTTTTAGCTTTGCAATGTGT 1901583 28 100.0 32 ............................ ATGTTAGGGAAACGCTTGATACATTCATGCTT 1901523 28 100.0 32 ............................ AATATAAAAAATCCAATACAGGGCTTAAAGCC 1901463 28 100.0 32 ............................ ACTCAGCAAAAAGAAAGTGCTTTGCTTATGCC 1901403 28 100.0 32 ............................ ATCGTCCTGAGAAGATATCACCAGCAAAGCCA 1901343 28 100.0 32 ............................ GTCAGAGCGCCCGTACTATGACGAAACAGGCT 1901283 28 100.0 32 ............................ CGCGATAATACCACCACCAACTTTATCAATTA 1901223 28 100.0 32 ............................ GCTATGAATCCTGCCGAGCCACTAAGCAGCCG 1901163 28 100.0 32 ............................ TGCACCGTTGCCAGTCAGTTCGGTCGCGCTAT 1901103 28 100.0 32 ............................ CAACTATTGAGTTGTCTAAATCGATCTCATAA 1901043 28 100.0 32 ............................ GAACGAAATGAGTTCGATTAATTGAACCACTT 1900983 28 100.0 32 ............................ CAAGGCTGAACGAAAAAAAGCCAAGCTTAAAC 1900923 28 100.0 32 ............................ TTTGGATTGGTGGCCGTAGGTTTTAATCATCT 1900863 28 100.0 33 ............................ ATGTACGAAGCCCACCTTATGCGCAAAGTTGTT 1900802 28 100.0 32 ............................ TGACGACATACGAGCGTTGTGCAGCTCGTCAT 1900742 28 100.0 32 ............................ TTGAAAATCAAAAATAATCCAAGTAAATGCAA 1900682 28 100.0 32 ............................ ACTCTGAAACGATACCGCAGCGATGCAGCTCA 1900622 28 100.0 32 ............................ AGAATCGGTGATGATTGTTTTCTTAGCTCTTA 1900562 28 100.0 32 ............................ AAGCCAAAGAAGTACTGCAAGTGATGGTTGAC 1900502 28 100.0 32 ............................ TAACATCGATGCCACATTCATTGACCGGTACG 1900442 28 100.0 33 ............................ ACCCGAAGGTGGTTTACTTAGGTGGCCCTGGAA 1900381 28 100.0 32 ............................ ATATTGATACCGAGCGTCTTAGCGTTGTCGCT 1900321 28 100.0 32 ............................ ACCTGAACTGATACTTGTATTCACAAGAACAT 1900261 28 100.0 32 ............................ TTTTTCAAGGCTGCACAGCTCATTCAATCTCA 1900201 28 100.0 32 ............................ TCCTGAATTGATGCAGTGTTTTGGCCTACGGT 1900141 28 100.0 32 ............................ TCGCACCAGTGGCCAGTACGTTGCTTGGGCTT 1900081 28 100.0 32 ............................ TTTACCCCATGTCGGCCAAGTTTTTAGGGATG 1900021 28 100.0 32 ............................ GTTGGCAAATTTAAGCGTGAACTCGTGATAGA 1899961 28 100.0 32 ............................ TGATAGATGCCTGCAATAGCTCGGAAGTTAAA 1899901 28 100.0 32 ............................ TCTATTTTTAGATATAGATTGGCCTTTAACCG 1899841 28 100.0 32 ............................ TGTAGTAAAAGACAACCGCTATGAGCATGCTG 1899781 28 100.0 32 ............................ GAACGGGTCAGTTCGTTGATATATAACTTCGT 1899721 28 100.0 32 ............................ AAAGCAAAGTAGAGGGGGTTTTATTTATGCTA 1899661 28 100.0 32 ............................ ATCGTTCAGCCAGAATTAGCGGGTGAGCTGTC 1899601 28 100.0 32 ............................ AACCACAACATCATTCCAATCACTGATACCTT 1899541 28 100.0 32 ............................ TCAGCATCCACACGGATTTGCTTCATCTCATC 1899481 28 100.0 32 ............................ GATAGATGAATCTATATTCGAACTGAGCTTGA 1899421 28 100.0 32 ............................ TTGACGCTGATCCATTCCGGCACCGCCTGGGC 1899361 28 100.0 32 ............................ TGCATGTGGCGCAACAATTCTTCAGCGCGTTC 1899301 28 100.0 32 ............................ ATTGCGAATAATTCCGAAAAGTTGCGAATATG 1899241 28 100.0 32 ............................ TGATTGTTGTGCTGTGCATCGTGATTGTCTGC 1899181 28 100.0 32 ............................ AAACGTGGGTCAAAGTAGTTATTGCGAACAAT 1899121 28 100.0 32 ............................ TAAAGCTACTCGAACAGAACAACCAGCTAATA 1899061 27 89.3 0 ....................T...-..T | ========== ====== ====== ====== ============================ ================================= ================== 135 28 99.9 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : GATATAAAGAAATGGCTAGACCGTTTAACTGATTATTTGCATATTACTTCGATTCGCGAAGTACCTGAAACTAAAGTGAGGGGCTATGCAATATATAGTCGTAAACAGGTTAAAACCAATGCTGAACGCTTGGCACGTCATGAGGCAAATAAGGGACGTTATAGTTATGAAAATGCTTTAGCACATTATCAAAAATTTATCACAACTACGGATTTACCTTATATTCAAATGCTCAGCCTAAGCACTTCTAATGAACAGGATAAGAAGCGTTTTAAATTATTTATTGAAAAGCGACCTGCTGAAAAATCTGAAACTCAGGTTTTTAGTACTTATGGTTTAAGTTCGGTGTCATCTGTACCCGAATTTTAACCCAATATTTTTTCACTCTTTAACAGTTTAATAAAATCAATAAGTTATAGCGGTAGGTTGAAACTTGGGTCTTTTGTGGATTTAAAGGGTTAACTTACTGTTATAACTTTATTTTTTGCTGTAAAATTACT # Right flank : CTTAATACCTACACCTGATTACCATTTTTAAAAATGGTGACTGATCACCTGAATCACTCACCATATGCTTTGAGCCGAGTAGGGGCTAGTTGTTGGCTTCTGGCAAATCAAACCAGATCACTTGAGCATCCTCCAGCGCCTTAATCTGACTTGCTTCAATGAAAGCAATTGCACCACCAGCCGCTACAGTATGTTCTGCAATCTGGACTGAACCGGAAATCACATGTACATAATTCACCTGCTGTGTTGCTTCAACCTCCAGACTTTGCCCTTTGTGAATCACTGCAGTTTTGACTTCAGTATTCTGGCGGATATGCATAGGCGCATTGTCATTTGGTCCACAAATCAAATGCCATTGGTTGGGCTGCTCGTGCGGATCACATCTAATTTGTTGATAGCTGGGTTCGGCATTCCGCTCATTAGGCACAATCCAGATCTGCAATAAATGCACCTGCTCATCACCCTGGTTCATCTCACTATGACGTACACCTGTGCCGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //