Array 1 91990-92751 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235908.1 Kamptonema formosum PCC 6407 Oscil6407scaffold_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 91990 35 100.0 39 ................................... AAGAAACTGCTTTCCACCCCTGCTCAGTGGGAAAGAAAT 92064 35 100.0 38 ................................... TGGAGTGAAAATCGGAGGAGTAGGAGCAGCGCCACCAG 92137 35 100.0 38 ................................... TTTCAACTACACCATCCTCCCCATCGGGTCCCGTCATG 92210 35 100.0 37 ................................... AAATGAGAGCTAAATGTCTTAAAAAGATAATGGAAAA 92282 35 100.0 35 ................................... TCGTCTTCTTCACCTTCAAAAGAAAGAGTGCCGTC 92352 35 100.0 37 ................................... CTAATCAGGCATTAGAGAAATTCAAAAGCAAAAGCTA 92424 35 100.0 35 ................................... ATTAGCCGGGTTGATTGCGAGCTGCAACACCACGT 92494 35 100.0 39 ................................... ATCACTATATTAATAATGATAAGAGAAAAAGTTTTGCCA 92568 35 100.0 36 ................................... CAGTCGTTGTTGTAGATGTAATGATAGCGCCGTATT 92639 34 85.7 41 ...C..-....CG....A................. AAACCTGTATCATCTCTACTCATCTGTTCTTTCATTTGAGT G,G [92642,92656] 92716 34 80.0 0 ...C..-....CG....A........C.T...... | G,G [92719,92733] ========== ====== ====== ====== =================================== ========================================= ================== 11 35 96.9 38 GTTTGACCCTTACTAAAGGGAAAAGGTGCTGAAAC # Left flank : GTGAATTCTAAGATTTTTGTACTAGAGGATTTTACACCGCCAGATGAGCGGGGTGGTGTCTATCTTCAACCTTATGCCCTAAAGAAGTACCTGAAGCATTGGGAGGAAAAATTACTTTCTGAGGTGACTCATCCCCATACAGGGTATCAAGTCAGTTTGAGACGGTGTATGGAACTACAGGTGCGAGAGTATATTGCTTGTTTGATGGGGGAAGTTGAAGTGTACCGCCCTATGCTGTGGAAGCTCTAGTGTTTGCTAACTGTTCATTGATTTGTTTAGTTTATCAATGAACTGCCACTGATAAGCATCTGAGGGGGTCTGCTAGGGTTTGAAATCCTTATTCTTTCGTTGACCCTCTCGGATAAAGCTCTGGAAGAGGTTTTCAAGCTTGTGTTTGGCAGACTTATTGAGAAGTAGACTCATTTATTGCAGAAGAAACTTGACCCCTTCAGATCAATGGGTGTATGATGCTCTCATACTCAGGCTTCTACAAGCTGATG # Right flank : CGGTAGGCATCAGAATGTTGCGAAGCTAAAAGTTATACTCCCCTGTTGCGACCTTTTCATTAAAGTTTAAGTCGTCACTTTTTAAAACGGAGAAGAAGATGGCAATGTTACCAACAGAACTACCCAATTGGTATAAGGTTCAAGGAATAGGCAATGAAGAGAAAGGCTGGGTGCCAAAAACTGAAGACATTGTTGAAGGCAGTCAACGGGAAAAGAAAGAAGTAACAGAAGCGTGGAAAGGGACAAATGACTTAAAAGCTTCCAATAGCTATACTCTTCGCATTGATGACTTGCAAGTTATTAGTCCCCTACAAATTGGTGGCGGCAGTTTCCCTGAAGGTCATATTTTACCAGCACGAATTGCTGGAATCCCCTGCATCCCAGGTTCAACGCTGCGGGGAGCTTTACTGAGCTGGATAGAAAAAATCTTAAAGGTATCGCCTGAGAATTTGTCGCCAGAGGAGAGAGAGGAGAGAAAGTTTTGGGAAAGCTTAATTGAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACCCTTACTAAAGGGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 411993-411733 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235898.1 Kamptonema formosum PCC 6407 Oscil6407scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 411992 37 100.0 42 ..................................... CCTGCTGTTGGATTTGCCCTCATTTTGAGGAAAATATCTAGC 411913 37 100.0 33 ..................................... CCGTATCCCGATAAAAATTAGTCCAGTCCGAGG 411843 37 100.0 37 ..................................... ATAGCTCTATTTGGAATAGAACCTTTCAGTAGTTATC 411769 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ========================================== ================== 4 37 99.3 38 GTTACAATTAACCTAAATCCCTATCAGGGATTGAAAC # Left flank : ACAGCAAGCTAAGCCAGAGGCAGGTGCGATCGCGCCTGGGGATGATGTTGCACCTTTGCCTTAGTTTGGTTGATTGCTACAGCAACCGCTTTCAGCGGTTAGGGGCTAGGGGCTAGGGGCTAGGGGAAGAGAGGAAGAGGGGAAGAGAGTCAATAGTTTGGGCCATGAGCGAGTGTCCTAACCGTTGTGGCGGTTGCTACAATTGCTGATTGGTTGGCGATTGGTAATTAGCAATGCGATCGGACTTTTTTGCGGGAGAGGGTGGGTGTAAAAATCAGGGTTGGATTTTTTTCGGCTGGATGCCTTGATGGGTAAGGATTTGAGGGTTGTTGGCGTGAATTTTGATTCCCGCAAGTTTGGAAATGCTTGATGTTAAAGGGTTTGAGGGAAAATTTGTAATTTGCCTATTGACAAGCTGAGGTCTGGAATGGTACTTTTAGAAATGTCACGCGCAACTGTACCTTGAAAACTAAATATAGTAAGGGTTTCAACACCAAGCG # Right flank : ATACAACAGTAAAGTGGGCGCAAAAGCGCCCACCCTAAATTCAACTGAACTGCTTACCCACATCAAGATTGAAAAGCGTTTGCAAAGTCTGCATCGCTTGGCGGCGCACCTCAATATCTTGCTGTGCTCGCAACTGCACCATCGGATCGTGTAAAATCTTATTTACAATCCCCCTAGTCAAAGCCTCAATCACTTCTTGATGTTTTTCTGCAAACTCAGAACCCAAACGAGATAAAGCCTTTTCTAACTCTTGTTCGCGAATCGATTCAATCTTATCCCGCAAGCAGCTAATAGTTGGAACCGTCTCCAAACTCCGCCACCAGACATCAAACGCTGCTATTTCCTCTTCTAATAAACCCTCAGCTTCCTGAGCCATCTTGCGGCGAGTTTCATGATTTTGAGCTACAACAGCTTTCAGGTCATCTACATTAAAAGCTCTCACGTTCGGCAAGTCATTAACATCAGCATCAACATTACGCGGAACAGAAATATCCACCAAC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTAACCTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 428585-428257 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235898.1 Kamptonema formosum PCC 6407 Oscil6407scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 428584 37 100.0 40 ..................................... GAAGCCTTGACCCCACTAGAAGCGCTTGAAAAAGTAAAGG 428507 37 100.0 33 ..................................... AAAAAGCTGAGAAAAGAACAAATTCGACGATTT 428437 37 100.0 37 ..................................... CTATTTTCTGCGGTACTTTTGCCTCAATTGGTGCAAT 428363 37 100.0 33 ..................................... AATTGATTGATAGTCAACGTTGAACTGGTGTTT 428293 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 100.0 36 CTTTCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Left flank : TGGAATAACGCTAATGTTCCACAGGTATGGCGGGATGAATATCCACAACCGCCGGATTTTATAGAGTCTCGCCCTGCGACGGTTAAGCTGACTCGTTCGATTCCGCAGGAGAATAAGCAGTTGCTTAAGGAAAAGTTGGGTTTTAAGGGCTACAAAATTGGGGAGTTTGGGCCTCGGCAGACTCGTCGGGCGACGGCGGCTAATTGGCTGATGAGTTATATGGTGGATGGGCGCTGTTGAGGGATGGCTTTGCGGGAATCGGTAGGTGTTTTTTTTAGGGTGTAAATTTTTGGGGCTGAATCGCTTATGCTGCAAGGTTTTGAGGTGCGTGGGATGGTGAAGGTGATTCCCGCAAAGTCTGTAATATTTGCTGTGATTGGGTTTGAAGCTTTTTTTGTTTTTGCCTCTTGACAAGTCGGTGGCTGAAACGGTATATTGATGATCGGTTCACGAAACTGTACCTTGAAAACCAAATACAGCAAGGCTTCCAGAGGTCGGGC # Right flank : TATGATTGATAGAATCCCTATCAATCACAGTTTAACGAAATGCACCTATTGCAAATTGCTCTACATCTCTGCTATTTTCTTTTTCACCCATTAATCGCTTTGTAGCGCGTATTTTCTTTAGCAGTAAGTAGTCGCGCTAAGAGTTTTTACCGCAATTGGTCGAGGGCCCTACAGGAGTCACCCTAAGAGTTTTCGCCGCAACTGATCGAGGGCTGTACAGGCGCTCAGATTCCGAATCCAGTTGCGATCGCGCAGAGTACCAAAGCGATATTTAAAAGCTTCTACTTCACCATTAGGCCGCGCTAAACCGATATAAACCAATCCCACTGGTTTATCCTCACTCCCTCCTCCAGGCCCAGCAATTCCTGTAATACTCAAACCATAAGTAGTTTCTAGGCGCGATCGCACTCCCGCAGCCATTTGTTTTGCCACTGTACGGCTTACCGCGCCAAATTTAGCTAAGTCTTCTGGATTAACATCCAATAGCCCTACTTTAACTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTTAAATAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 408541-410209 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235903.1 Kamptonema formosum PCC 6407 Oscil6407scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 408541 37 100.0 40 ..................................... TCTCCAAAATGTGCTAGGGATATTCACATCACCAGTAAGC 408618 37 100.0 41 ..................................... CACAAATTAGCCGCAAAAGGTGCAGATGCAGCTCCCTCAAA 408696 37 100.0 35 ..................................... GATCGCTATCGGATCGCGAAAAAGCCCCCAGTACG 408768 37 100.0 41 ..................................... GATAGTCCAGCCACCACTTTTCAGCAAAGAAATACCCGGCT 408846 37 100.0 39 ..................................... GTTTCCAAAATCCATAAATCCAGGATCGGATCGTCTTAC 408922 37 100.0 34 ..................................... GAGCATCATCGATGGTGTAGTTAATTAAGGAGAA 408993 37 100.0 35 ..................................... GTCCTTCGTGGGCAACAGAAGCGGAAGCATAAATC 409065 37 100.0 40 ..................................... AATCAATTGGTTTGCTAGAATTAAAGAGTCGATTTAGCGC 409142 37 100.0 38 ..................................... TATAATGGCTAGAATCCTAAATACTATTGAAAGCCTTC 409217 37 100.0 32 ..................................... CAGAACTTACAGCAGCAAATTCAGAATTTACA 409286 37 100.0 35 ..................................... GAAGAGTTACGTAAAAGTAAAGAGGAAATTGCACT 409358 37 100.0 36 ..................................... TTGCTTGTCATGCCCTGACCCAACACGGCCGCGAGA 409431 37 100.0 42 ..................................... CTTAGCTGCTTGGTATACCGCCTTGGTGTCGCAGCCGCACCG 409510 37 100.0 34 ..................................... CCGCCATCTTCCTTTGTGGCGGCGTAGCCGAAGC 409581 37 100.0 41 ..................................... TTTGGACGCTTCCGCACTTTCTTGTAGCGACCGCGCTCACG 409659 37 100.0 38 ..................................... ATTTCCGGTGGTAAATGCGATCGCTCACAACTAGCGAG 409734 37 100.0 38 ..................................... AGTAAATTCGCCTACCAGACATACTAATAACAACACCC 409809 37 100.0 33 ..................................... CTTTCTTACTTAGGCTTCGATAGGCTCAGTGAA 409879 37 100.0 38 ..................................... CAGCATATTTTCTCAAATCAGAAGATTCGGAAGCTCGA 409954 37 100.0 35 ..................................... CTGCTTAAGAAAATCAGCAAAAATTCCACCAACAC 410026 37 100.0 36 ..................................... ATGCTAATTCCTAAAATCTGAGCCGATACCAACAGA 410099 37 100.0 37 ..................................... ACTTAAGCGGGTTGAAGGTTCCCAAATTATTCAACCA 410173 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 100.0 38 GCCGCAATTAAACCAAATCCCTATTAGGGATTGAAAC # Left flank : ATCGCTCTTTGTGTGGCTGATGCTGAGTATGTTGAGGTGAATCTGTGCGGTACTTGGCTGTCGGTGAATGCTGAGGGCGCTGATGGCATATTTATGACTGTTTTGAGCGATCGCGCCGAGTTTTTGCTGCTGAAACTTTGGCACGAAGCCGAAGCTGGTGCTTCTGTGGTTAAGGAAGTTGGCGATTAATATCGTATGCGGGCGGCTGGTTAGTCGCCCTTTTACTGTTATGGGTGCTGATTGGGGGTTTTTGCGGGAATCGGTAGGTGTAAAATTTGGGGTGTAAATTTTTTCGGCTGTATGGTTTGATGGGTAAGGGTTTGAGGGCGATCGCTTGAAAAATCGATTCCCGCAATGTCTGAAATCCTTGCAGGGATTGGATTTGAAGGGAATTTTATTTTTGCCTCTTGACAAGTTGAAGTCTGGAATGGTACTTTAAGTTTAGTTTCCCGCAACTGCACCTTGAAAATTAAATACAGTAAGGGTTTCAAAACCAGGCG # Right flank : CCAAACTGCAATTGAAATTAGGACTACGCAAAGAAACAAGAAACCGGGTTTCTGTGAAAAATCCTTAGTTTCTCAACCAGAGATTTACGAAGAAACCCGGTTTCTAGCCTCAGCGTGCTTAATTACCAATTACCAATTACCAATTACCAATTAGTGCAAATCTCGATCCCAAACACCGATATAAATGCGATCGCTATCGTTGCGAGCAATCTCACCTTTAAGACCATCTTTGCTAAAATCAAAGCGATCCGTTCTCCGCTGCTCTACCGACCTAAAACCCTCCATAATTTCATTATTTGCCCCACCTAACATCCCATTTAAAGTAGTTCGCATCACCAAATCATCCACAGATTGAGCAAAAGATACCTCAGTTTGGCGCAATTTCCCAGAATCGCGATCGTAAATATAGCCTAAAGTAATTTGATTCGGCAGCAATTCATAAGTTGCCGTGCGAGTATTTGGCCAAAAACCTCTATTTTTAATCTTAGTTGGTTGTCCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTAAACCAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 1310855-1311474 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235903.1 Kamptonema formosum PCC 6407 Oscil6407scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1310855 37 100.0 37 ..................................... CTAGTAGGTGAAGAAGGCAAGCTAGAGAATCTTTGCC 1310929 37 100.0 33 ..................................... GCTGACGGTATTGGTTTTGGAACTTCTGGCTCT 1310999 37 100.0 38 ..................................... CTTAAACACTAAGTATATGAATGATAGGAATGAAGAAT 1311074 37 100.0 35 ..................................... AGAATTGTGTCCGCAAGAACACTTTCTTCCCTTAG 1311146 37 100.0 35 ..................................... AACTTAACAATCTCATCAACAGAATTGTACTTATT 1311218 37 100.0 34 ..................................... ATTATCCTCTTCAGATTCCAGCAAATTTAGCTGC 1311289 37 100.0 34 ..................................... CATAGGACATTGTTATTTGGGAGGGGAAAAAGCT 1311360 37 100.0 41 ..................................... TCACTGATTTTCGCAGCCATGATCGCACCAATGTTTTCTGA 1311438 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 36 GCCGCAATTAAACTAAATCCCTATTAGGGATTGAAAC # Left flank : GTTGGTAGGTTCGGGGATTCCTGAACCGATTTTGGGTTTGCAATGGTTGAAACTGTTGCCTTTGGCTGTGAATTTTGGGGCGGGAATATTGACGCTGGGGTAGAGTTGGAAATGCGATCGCGCCTTGCTAAAATCATCAAGCCGGAAGAGGATAGTATTCTGTTCATTCCTCTGTGTGCTTGCTGTCGGGGTAAGATTGAGCGCATTGGCGGGATTGCACCAGCGGACAGGAGTATATTTTTTGCCTAGTTTGCGGGAATCGGTAGGTGTAATTTTTGGGGTATCAAATTTTTCGGCTGTAACGCAACTGGGATAAGGGTTTGATGCCCCTGACTTTTAAAAACGATTCCCGCAATGGCTGGAACCTTTACAGGATAAGGATTTACGGAAAAGTTTTGCGGATGGTATTGACAAGTCGATGGCTGGAATGATACTTTTAGATCAGGTTCCCGAAACTGCACCTTGAAAACTAAATATAGTAAGGGTTTCATAAACCGACG # Right flank : CTAACAACCACAGATGTATAATTTAATCTATATTGCAGCAATGGGAATAAACTACCCGCTCGATACCGATATCCTACTGTAGTGGCTTTTTGATAATAAAAAAATAATTATCATCATCAAGAATTTTTTACTATCAAATATCAATATCAGGACTTACGCACCCAACCAAAGAAACCGGGTTTTTTTACAAAAATACTTCGTTATTACCCACATACAATCTCAAAAACCCGGTTTCTGGGGCCATCAGCGCAAGTCCTAAATATTACAAACCTCCCCAATCTGATAAAATCCATAACAGCCATCCCCCACCCACAGCCAAATCAATGACCGACAAACGCTTCATCAGAATCAATCCCGAAATCTATCAACATCCCTTCGACCGTAAGGCCCTAGCATCCCTCGAAAAAATGCCAGGACTATCATTTTTGATGAAAAAAGTCAACGAATATGGCATAGAACGCATCCTCAGAATGCAAACCTTGGGTAGTGAATTTAAAGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTAAACTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 1791888-1793088 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235903.1 Kamptonema formosum PCC 6407 Oscil6407scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1791888 36 100.0 35 .................................... GTAAAGAGATTCCCTCATTTCGGCAAAAGGGAATT 1791959 36 100.0 38 .................................... GCATAGAAGCGATGGGCAATGCCTTACAAATGGTGTTA 1792033 36 100.0 36 .................................... TCGCTAACAACTGCTTTGACACACCTTGTCACTCTA 1792105 36 100.0 37 .................................... CAGACACTCCATAAGATAATTCGCCCCGAAGACGAAT 1792178 36 100.0 35 .................................... ATGAATTGCCTAAATGGTATAACTTCGATGCTGAC 1792249 36 100.0 36 .................................... AGTTAAATTATTAATGCCGGATTTTGAGACAAAACC 1792321 36 100.0 35 .................................... GAACACCTACGGAAGGATTTGAATTTGAGCTAGAG 1792392 36 100.0 37 .................................... GTAAAACCAGCGAAAAAGGCGGAGGAAAAGCCTCCCA 1792465 36 100.0 39 .................................... TATTTTTCACCCGTTCTTTCTTAGGCCGGCTGCCTGGGC 1792540 36 100.0 38 .................................... TTGGCTTGTTTGTTACCTCCTGTTGTTTTAATTTTCTG 1792614 36 100.0 38 .................................... ATATGTTTAGCGCGTGGCCGGCTAACGCAATGGGTTTA 1792688 36 100.0 34 .................................... TACACCTCCTTTGTGTGGTTATGGTTGGTCAATG 1792758 36 100.0 41 .................................... CTAGACCCGATCATTTATTATTGGATGGCAGAGTGTTTAGA 1792835 36 100.0 38 .................................... TCCCACCCATTCTATCAAGTCAGCATCCCTAAGTTTCC 1792909 36 100.0 37 .................................... AGGATAAAGGTGCGCGATCGCTAGGCAAATTCAAATC 1792982 36 100.0 35 .................................... TAAAGAAGCGGCGGCTAGCTAGAATCACGAATAGC 1793053 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 17 36 100.0 37 GTGATTAAACCTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : CAGCTTTACGCATTCCAGTCCCAGAAGGCCGCATCCGCTACCATGCTGATAACGTCATGGTTCGCGTCCCCTTCGATGATACAGGACGGGCAGCAGTGCGAGAGGCGATAGAGCAAGCGCGATCGCTCCGCCAGTCCCCCTGTCGCCCACCCGTCACCGACAACGAACGCCTCTGTACCCGCTGCTCCCTTGCTCCAGTCTGCTTGCCAGAAGAAGCCCGACTTGCCCACAACCGAGAATGGCAACCTATTCGGTTATTTCCTGAAGACGACGAAGGTTGTATGGCTGGAAACCTTTATCCTGTATGGGTTTTAGCTTTGATTGGTTCGCTGGAGGTGCTTGCAAAACTCTGGATTTCATACAGGATAAGGGTTTGAGGAAATTGCGATTTGGGTTTTATGGCTAGTTTTTGGCTTTTTTTGAGATTTTGTTGCTATTGAGTGGAGGTGCTTGTAAAATGGGCGAGAGGTGGTTGTCCTGTAAAGGTTTCAGCCGCCGCT # Right flank : CGAAGGGAATTATCCGAATGAGTTTGATGTTCCTTGATGCCAATAGGTGTTATCTTACATCCAATCCGGGGGTTGTTCGTACTAGAAGTCAAAGACTAAAAACTAGATACTATCGGCCATGTAACCAAATCTGACTGGACGAGCTTTGAGAGCGATCGCGACCAAGAAAAGTTCTATATTAGTCTATATTTTGGGGAACCATCATCAGCACTAATTTACCCATGACATCCACCACAACGATCGCCACCCCCCTAAGCTGGACAGAATTAGAAGCCCTCACAGACTTTCAAATCGATCGCATCAACGGGCCAACTAACGCTCAATCCCGCCTGCGCCTGTTCGGACAAACCGAAGCCGATGTCCGAGTCACCCTCTACCGCGACAACCACGCCTGGTGTCCCTATTGCCAAAAAATCTGGTTGTGGTTGGAAGAAAAACAAATTCCCTATCGTATTGACAAAGTTACCATGTTCTGCTATGGGGAAAAAGAAAGTTGGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTAAACCTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 787056-788421 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235904.1 Kamptonema formosum PCC 6407 Oscil6407scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 787056 37 100.0 35 ..................................... CACCATCCCTATCATCAAGACTGTACCATTTGCTT 787128 37 97.3 32 T.................................... CGAAGCTTAAGAAACCTATCCCAAGATTTAGA 787197 37 100.0 35 ..................................... GTGATAATATTCAAGGTTCATTCTCAAGAGTATTA 787269 37 97.3 37 C.................................... GTTCCCTTGCCTGATGTACCTAATTTAACTGGCATCA 787343 37 100.0 34 ..................................... TTCTAACCTATAAACACAATAACTAAATAAACTA 787414 37 100.0 38 ..................................... CGTGCTTTTCCTTGATAATAAAGAAATTTTCTACTTGC 787489 37 100.0 34 ..................................... CAACTGCTGCAATATTTAGAGATTTCTGCTGAGG 787560 37 100.0 42 ..................................... TGAATATTTCAGGCTTGAAAGAAGGTAATTATTATTGTTATT 787639 37 100.0 33 ..................................... TTGGTTGGACAAACTGGAGCTGTTACAGTTCAA 787709 37 100.0 42 ..................................... CTAAAATATGGCTATAACTGGAATTATTGGACATCAGGGTAA 787788 37 100.0 34 ..................................... AATAAGAAAGTTGAACCGTGCTTTCCGACTATAA 787859 37 100.0 39 ..................................... AACAACGGAATGGTATCAGTAACTGTAGTGACAACCTCC 787935 37 100.0 36 ..................................... TTTTCTGAAATCAATTGATAAACTATCAGAGAATCA 788008 37 100.0 34 ..................................... TCCACGTGGCTGTATTATCGATCACGGGAATTTT 788079 37 100.0 45 ..................................... CAAATAGAATACAAGTCCTTCCATAAAGCTAGACATTTGTTTTGC 788161 37 100.0 36 ..................................... AGGCACTACAGCAGGCATTTCAAAGACCAATGCAAA 788234 37 100.0 36 ..................................... ACCATCATCAGAAGGCAGCTTGAGAATGGGACAGTT 788307 37 100.0 41 ..................................... TCTACAATTGCTTTAGCGTAACCAGCAATGTCCGCTTTAGA 788385 37 91.9 0 ..................................TTT | ========== ====== ====== ====== ===================================== ============================================= ================== 19 37 99.3 37 GCCGCAATTAAACTAAATCCCTATTAGGGATTGAAAC # Left flank : CTGGTTCGCTGATTTTGTCGGGGGTGATGATGTTAGAATATCTCGGTTGGCAGGAGGCGGCTGAGTTGATTAAGAAGGGTTTGGCGGCGGCGATTTCTAATGGTGAAGTGACTTATGATTTGGCGCGAATGATGGAACCGCCTGTCCCTGAGTTGAAGTGTTCGGAGTTTGCGGATGCGATTATTAAGCATTTTGGTTAACTGTTAACTGTTAACTGTTAACGGTTGAGACAGGAGTATATTTTGTCTAGTTTGCGGGAATCGGTAGGTGTAAATTTTGGGGTGTCAAATTTTTCGGCTGTAATGCAACTGCTGTAAGGGTTTGATGCCCCTTACCTAAAAAAACGATTCCCGCAATGGCTGCAACCTTTACAGGGTATGGATTTGAGAAAAAGATCGCAGGAGGGTATTGACAAGTCGATGGCTGGAATGATACTTTTAGATCAGATTCCCGAAACCGCACCTTGAAAACTAAATATAGTAAGGCTTTCAGAAACCGGC # Right flank : TTCAACTGCATAGGCAATCTCATTTTTTAGGGCTTACACAATTGTCACACTTGAATCTACTTGTAGGATGCGTCAGACACAGAAATCGATCGAAACCGTCAGGGTTGTAGTATCAGACGCACCCTACTAATTGTGCCAGTTGCCTAAGTTCTGTCATTATTTTGTTAATCAAACACCTAACAACAACCCCCACCACTATAATGCCAAGTTGAATCAGTAATTAACACTCGATCCTGGATTAACGCCCCTAACTTCCCAGCAGTTTTATCGCACACGGCCGCAGGAACTCCCCGCTGAAGTATATGACCTTCTCCATCATCAAAAAACTCTTCTAGCCCGTTATAAATTGCTGTTTTACCCGTAAAAACACAGGCCCCATCATCGGGAATTGATACCTTAAAAGATACAGAATCCAGACTTTCTAAAAGCAAATCTGCATCTAAATTATAACTCACCCGATCCAATAACCGATAAGACCGCCGCGCCCTAATTTCCACTTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATTAAACTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 1965404-1965962 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235904.1 Kamptonema formosum PCC 6407 Oscil6407scaffold_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1965404 36 100.0 37 .................................... TATTCTATGTTTGTTTCTCCATCACGTTCCCAATTAG 1965477 36 100.0 39 .................................... CCTTTTATAAAGGTGGATTAGAAACCACCTCCTCAATGT 1965552 36 100.0 40 .................................... GGGTTAATTCAGTGTACATACTTGAACTATTTTTATCTGA 1965628 36 100.0 44 .................................... GAGCAGCAGCCTCTTGACCGTTAGTCATTGAAAACTAACTTAGA 1965708 36 100.0 34 .................................... TTTTCAGAAAAATGTGTATGTCACAAGAAAGAGT 1965778 36 100.0 36 .................................... CAGTAAGATGTCTGATAATAATCCATTTTTTTACCT 1965850 36 100.0 41 .................................... CCTTGTCCCGCTGTGGCAGCGGAGTTGGGTCCATTTGAGGC 1965927 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 8 36 100.0 39 CTTTCATTACTCATTTCCCCGCAAGGGGACGGAAAC # Left flank : CTCAGCATAAAGGTAGTCATTGCTGTGGGGGGCTAGTTCAATGACTAGCCCGACTAATTCTGTGTCCGCAGGCCAAGGGAGAGGTTGATGCTTTTTTTGGGTGGGTAGTTTTGGCATAGGGGCTAGGGGCTAGGGGCTACGATGCTCAGGAAGAAGGGATATAGAATCAACGGTTTCAGTAATTCCGATCGTAGGCCTTGACAAAGACCTTTTCCATCTGTATGCTGAGGTTAATTCACTTCAGGACTTTGAAAATTTTATAGTTTTGGTCAATCGCGTGGGGTTTGTTTCGTGACCCGTAGACAATAATCGACGCAATCCGAGAAATCGCTGAAAGCCTCATTCTTTCGTTGAGGTGTGTCGATTCCTTTCCCCGTAAGGGTTTGAGATGTTATCGCTCAGGGCTTATTGAAGATGACCCCCCTTTTATTGACAGGTAAAATTTATTGCGTCGATTTGCCGTCTGAAACTCTCTCTGGGTAAGGAGTTGTAGCGTAGCT # Right flank : CGTTTAATGTTTTTTAGAAAGTAATAAAAATAACTATAACTTTCATTACTATCGCGATCGCTCCCTTACAATTAAGAGCGATCGCACCTTCGTCTATTCTGGAAAATCAGGAATCACCCATTTAGGTGGCTCCGATCGCTTCTTCCTTACCGCTTCCTCAGCCATCTCCAGCATTTTATCCAGAGAAGTGTTTTCTATGAAACTTGACGTTGCTGCCGCATATTCCCGCTTCGGGCATTTATCGCCCAAAATGCAGCCGTTGACGCACTCTACAGCACAATTTACTGTACTTTCTACCATATTCTCTTTCCTTCGATGCTGCCGACAATTCGCAGGCCGATGCTCTCAGAGCCTTAGCTGAGAAACTGCCCGGTATATGTATTTTACTTTACAAATTGCCCTAAATGCCGCTCGAGGGCCATAGCCAGAGCGATCGCGATCGCCGAGCTGTAATACAATCAAAACAACCCACCTTTTCTCTGCACTATGAGTAATCCTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATTACTCATTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //