Array 1 34-2702 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000002.1 Thermococcus zilligii AN1 TziAN1_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 34 30 100.0 37 .............................. TCGGAGTATCAACTGAAACAATCAATGGAATACCATA 101 30 100.0 38 .............................. TGCAAGCAACACCAACGGCCGCTCAGGAACATCAATAA 169 30 100.0 37 .............................. TCACCCACCACCTCCCATCACTTCAAAAGGTAACATA 236 30 100.0 36 .............................. TAACAATATCCTTTAACGTCATTTTGTCTGTCCTCA 302 30 100.0 42 .............................. AAGGAGGCTGAGTTTTTACTGAAGCAGGGTGCTATGGCTTTG 374 30 100.0 39 .............................. CTAATCGTCCCATCATTACCCAAACCACTCTTATCCAAC 443 30 100.0 38 .............................. TAGGCCCCCTTGTCAAAGTCATAATAAACTCATACCAC 511 30 100.0 37 .............................. AATGAGGCGGAGATGGTAATGGATGCAGTGTTGGCGC 578 30 100.0 37 .............................. CATCCTCAACATCGACAACCGTCGTAAACCACAAACC 645 30 100.0 38 .............................. TAAGACCACCAAAAATTAGGACAACACAACAAAATTGT 713 30 100.0 34 .............................. AAGATTGTTGCGAATGGTTATGCTGGTGTTGTGA 777 30 100.0 38 .............................. AAGGAGTTTGAGGAGTTGATAAGGGATATTATTGGTAA 845 30 100.0 37 .............................. TAGTAACCGTTCGCGTCAGAGACCCTCACACCCTCGT 912 30 100.0 40 .............................. TAGAGGTAGCTCCCCACAATGTCCTCGTCCTCCTCCCCAG 982 30 100.0 35 .............................. CATAAACGGCCCTGTTCCCCACCTTCCCCACCGGC 1047 30 100.0 36 .............................. CGGAGAGATTGACCTCTTTGCTGAGAACACGCTCGA 1113 30 100.0 40 .............................. CACGGATGAGGAGGCAGAGAAGGTCATCGCTGAGATCCTG 1183 30 100.0 42 .............................. AGGAGCGAGGGATCACAATCACCGGCTGGTTTGTGGACAAGG 1255 30 100.0 36 .............................. GTTATGTTTGTTATGCTTAAGATGTTAAAGTCTTCG 1321 30 100.0 38 .............................. ACGATAGGGGCAACAGGATACTTGAACCAGAGGTTAGG 1389 30 100.0 36 .............................. GTTATGTCTGTTATGCTGAGGACAGTGAAGTCTTCG 1455 30 100.0 35 .............................. CCGGCACTGAAGGACGTGGGCGGGTTCGAGGATCT 1520 30 100.0 37 .............................. AAAGATTAAAAACCGGCGTTCATACGCTTTCAAGTCT 1587 30 100.0 40 .............................. ACGACGCAGACACAATAGTTCAGAAGGCTGTCGACATTAT 1657 30 100.0 39 .............................. CACCTGAACGTCCTCGACTTCCCACTCCTTCTCGCTGAA 1726 30 100.0 39 .............................. CGGCACCCTAACAAACAGCACTTTCTCCCTCATCCCGAA 1795 30 100.0 36 .............................. CAGTTCCACTGCCTCGACCACCCTATCGAGAACCAC 1861 30 100.0 37 .............................. GCAGGGCGACGGGACGATTACTGTGGACTTTGTGTTC 1928 30 100.0 37 .............................. AGGCAGATATGGGGAATAAAACTCACGGAAACGAACC 1995 30 100.0 37 .............................. GAGGGCTCTTCCGACCCCAGCCCGACCCTTGACGGCT 2062 30 100.0 36 .............................. TCCCAGTACACTGCAACCTCCACATCATACGCGTAT 2128 30 100.0 37 .............................. GAGGCGCTACCGGTTCTATGACGCGCTCGATGCAGCG 2195 30 100.0 38 .............................. AAACACAATCTCAACCCTAAACAACATCTCCAACCACC 2263 30 100.0 39 .............................. AAGGGAGTCACCGGGACAGTCCCCGGCCTGGCAGTGGGC 2332 30 100.0 39 .............................. TTCGCTGGTGCTGGGACTACGCTTGTTGTTGCTGAGCGG 2401 30 96.7 38 ........................T..... TTGATGTAGAACATCGTGTCGACTGCTGGCTGTTTTGA 2469 30 96.7 38 ........................T..... CGACGTTGGTATACACGTCTTTCCACATACGGGTGTCG 2537 30 90.0 36 .............C...A......T..... GGAAGTTCTCGAAACTGAACGCAGCGTTAGAGGGAT 2603 30 93.3 40 .................A......T..... ACGACAGCCAGCACGGAGAGCAATGCCACAACTCCTTTGT 2673 30 93.3 0 .................A......T..... | ========== ====== ====== ====== ============================== ========================================== ================== 40 30 99.2 38 GTTGCAATAAGACTCTGGGAGAATGGAAAC # Left flank : TTTAAGTCAACAACTTCAAACATCTTTCGTCATG # Right flank : CAAGGGGTATTATTGCAGGCACTGTGGTTATGCGGTTAGTGATGCTGAGTTGGCTCGTAGGGGGTATGTAGTTATTGAGTGAGGTGATATTTATGGGTATAGTTTTAGATGTGTTGCTATATTTGGTTATTTTATTTGTTGTTGGTTTTAGTGCTTTGGTGTTGTTGGTTTGGTTTTATTCGATGTTGGCGGATTTGTTCCTTGAACCGTTAAGGGGGTTGTTTGATGAAGGTGAGGGATTACGTGAGAATGAAAGGTATAAGTGATTTATATCCTCACCAGAAGGAGGCTTTGAAGGTTCTTCTTGGGACTGATAAGAAGTTGCAATAAGGCCCTGGGAGAATTAAAAGACAAGAACACAGTTCACCCCGGGCTTTGGTGGGGGTCTCAGGAAACTTCGAGGGGGTGTGGGGGACGGGACGTCCCCCCAGACTCTGGGAGAATGGAAATCAGAAGAATCGAAACTACAGGAACTCCTCAAAAAGGAGGTCTTCCTTCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 368669-372307 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000002.1 Thermococcus zilligii AN1 TziAN1_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 368669 30 100.0 38 .............................. ATGGTTTGAATGCAGTGCAACAAACAATGTTCACGAAG 368737 30 100.0 38 .............................. GGTCCTTGCGATGACATCAACAGCATTAGTGATGTGGA 368805 30 100.0 37 .............................. ACGGGCCAGACAGCCTCCGAGCACTGTACCTCAACCA 368872 30 100.0 39 .............................. CTTCATCCATACGCTCACTGTGGAATCGTTCTCCACCTT 368941 30 100.0 43 .............................. GGTAATGAGCTACGCTCCTCTCCTCACACACGCCGCGTTTCCG 369014 30 100.0 39 .............................. ACCATCGCGGCGAGCAGTATGAGGTACACCAAACCCACG 369083 30 100.0 38 .............................. AAACAGAAGCAATATCAATGCGCTACGAATGGTATCCA 369151 30 100.0 36 .............................. GTGTTTGCGGCATTTTTAGGTGGTTTGGGAAAGGAT 369217 30 100.0 37 .............................. GCAAGTCCAGTTCGTTTCAATTCTCCCAGAGTCTTAT 369284 30 100.0 38 .............................. AGCCGATACAGCCGCGCAACCCCGCAGAGACATACTTT 369352 30 100.0 39 .............................. GCGGGGGGCAACCACCACAGGACATCGACACAGTCACAC 369421 30 100.0 39 .............................. CTCGAAGACCTTACAACCAACGAGTTCGGCCTTATCCTA 369490 30 100.0 34 .............................. AACTCCTTCTTAAAATTCGACCCTACAACCCTAT 369554 30 100.0 38 .............................. CAATAACCATCTTAAGCTTCTCCTCAGGCGATAACTCA 369622 30 100.0 37 .............................. CGGCAAGAGCTACGACGAGGTCATGGCCCACATCCTG 369689 30 100.0 42 .............................. TCTTAGGTTTGTTAGGGATGTTAGTGATGTGAATGATTTAAT 369761 30 100.0 37 .............................. TATACATCAGCACATCGCTCATTTTCTCAAACCGTAA 369828 30 100.0 40 .............................. CATGAGGAGAAGGATTTGAAGGCAATTCATGAGAGGGAGT 369898 30 100.0 38 .............................. CCTTCAACTTCAGGGACGCTGACGCTGAGCCTATACGT 369966 30 100.0 37 .............................. AGTTTTGCGTTATCGGATTTGAGTAATGTTAGCGATT 370033 30 100.0 37 .............................. ACTAAGGAAGGTGAGAAGGTCGAGGTTACTGCTGAGG 370100 30 100.0 38 .............................. AGATTCATATCAACCATTTTACCATCGACAACAACTCT 370168 30 100.0 36 .............................. AGTTGGTCGGAGTATAAGTTGTCTGATTTGGATAGG 370234 30 100.0 38 .............................. TATACATAGAGACGTCACTTAACTTTTCAAACAAGAGC 370302 30 100.0 42 .............................. GGGTTTGCACCAACGACCTCACCCCCCAAAGCCGCTTCAACG 370374 30 100.0 37 .............................. CAGTGAGCCTGATCAGGGCCTCCATCGCACGCGGTGC 370441 30 100.0 38 .............................. GCTTGACTGGTTGGCCACGTTGAGCTCAGGGTACAGGT 370509 30 100.0 37 .............................. GGCTTTAGAAACATTTCAATTTCTTCACCCATCAGCT 370576 30 100.0 38 .............................. AACTGCGCGCCGGCGGCTTTTTGTGTCGCGGAGCCGTA 370644 30 100.0 42 .............................. AAACCTGTCCACTTGTGTGCGTGATTGTTCAATCCTGGGCAT 370716 30 100.0 40 .............................. GAAACCCACAAAAACTCATCAGAGTACACGAGAAACAAGT 370786 30 100.0 37 .............................. TAGCCTCACTGAAATTATATTTATACGTCTCCACCCC 370853 30 100.0 37 .............................. CCGGATGTGTATGAGGTTTATGATGGGACTAATTGGA 370920 30 100.0 38 .............................. GTGCACAAACCAATTCGGATTTTTTTGCCTTGGCTCTT 370988 30 100.0 38 .............................. GGGCTAACGTTCGGAACAAGTATAGGCACTGTTATTTT 371056 30 100.0 40 .............................. CCATAATAAAACCAAAAACAACAAACAAAAATAAAAAAAC 371126 30 100.0 38 .............................. TCACGACGTTGCACACTTCGACAGCCCCAACGTACTTT 371194 30 100.0 37 .............................. AACCGTAACCGCGTTTTCATACTCATCCGCATCCACG 371261 30 100.0 37 .............................. GAGCCCACTGCTTACGCGACTAAAGTCTATGTACTGC 371328 30 100.0 39 .............................. CTGCCCCCAGCTGTCAGAGCCCCTTCCAACTGTAGCCAT 371397 30 100.0 38 .............................. GACGACATCACGAATGTCAGGCCGGAAGACTTAGAGGT 371465 30 100.0 37 .............................. AAACTTTGAACATTGTTCAAACGTCGCCGCATATCGA 371532 30 100.0 39 .............................. ACCACCTAACCATTCTAACCCTTTTCGCATTACACTGAG 371601 30 100.0 40 .............................. GTGATGACTCATGAGACCCAAAAACATAATAGTAGTTCAG 371671 30 100.0 36 .............................. TGAACAGTTCTTCCTCTGATTGGAACACTTTGCTCT 371737 30 100.0 38 .............................. CCATTTGCCTCCTTCAGTTTTTCTTCAATCTTTTCAAC 371805 30 100.0 37 .............................. GTCAAAGAACTCATTACCTCCTATTACTTCATGCCTA 371872 30 100.0 37 .............................. CCAGTTTCTGGTAGGCTTTCTCGAAGTTCCCAGCCTC 371939 30 100.0 38 .............................. TGAACTACGCCGCAAACAGGGCCGAAGCCGCCAGCAAA 372007 30 100.0 38 .............................. ACGATCACGACAAGGCTTCCGAGCAGCGTGATGAGGAA 372075 30 100.0 36 .............................. AGTGAGATTGCTGGATATAAAAGGGTTATATACCAG 372141 30 96.7 40 ...........G.................. TTCTTTCGCCTCCAGCACATACTCAAAGTCCCCCGGATCA 372211 30 96.7 37 .................A............ TTATTTCCCGGCGGCCCGCGCACCGGTGGTGATACCG 372278 30 83.3 0 ........C......C........TA...G | ========== ====== ====== ====== ============================== =========================================== ================== 54 30 99.6 38 GTTGCAATAAGACTCTGGGAGAATGGAAAC # Left flank : AAAGAAAGCCGCTGAGGTTTTATGTTTTTCTGTATCACGCCTGGGCTGTCCTGATTTTGGAATTGCCCTTTCTGAGGGCCGTTTTTCTGGAGATTTCCTCAGTGACGGCCCTGGAAGTTTTTAGTAACCTTGTGTTACTATCTAACATTTTGTTACAGATTTTTGTGCATTTTGTAACGAATTTTTTTCGGAGTCTTGAGTGGGGGGAGGAGAGGGCCCGGAATCCCGCCCCCCGGATGGGAATTGGAGTTTTTTGCGTTTAAAGGGTTTAAAAGCCGTTTTTGCCTGTTTGGGCCCTTTTTCTCCCCCTGGAAGTCTCATGCTCATGGGGGTACACTGTGGGAAAAGCCTTGGGGAATGGTTTTGTCCGTTGAGTCTGGCTTTTTAATGGCCGGAAATCCGGCCTTTTGAAGGCTCTTTTAAGGCCCCTCCACAGAAAAACTTATAAAATCCGGGGATTAACATAGCCCTGCAGGGAAAACCGGGGAAAAACCCGCCCT # Right flank : GACAAGAACACGGTTCTAACCGGGCTTTGGTGGGAGTCTTAGGAAACTTCGAGGGGGTGTGGGGGACGGGACGTCCCCCCGTTACACAAAAACCACCAGGGGGCTCACATGCCCCCGCTCACCGCCAGCTCTATTATCCTCCTTATCTCCACGAGGAACTCCACCGGGATGTCCTTGAGCATCGGCTCGAGGAAGCCCCTGACGATTAACTGGGTCGCCTTCTCCTCGCTCAGGCCGCGGCTCATCAGATAGAACAGCTCCTCCTCGCGTATCTTTCCTATTGCAGCCTCGTGGCTGAGCTCTGCATCGTCAACCCTGCTGACCAGCCCGGGATAGGTCTCCATCACCGCCCTGTCGCTCATGAGCAGGGCGTCACAGCTTATGTGGCCCCTGGTCTTCGGTGCCTCGGCCCTTATGACACCCCTGGTTATTACCCTGCTCTCGTCCATTATAACCGCCTTGCTCGCGTTTATTCCCGCCGCACCTTTTCCCTGGAGGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 391439-395270 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000002.1 Thermococcus zilligii AN1 TziAN1_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 391439 30 100.0 37 .............................. CGATGAGAATTAGTAGTAACCCGCTTGGGAGGAGGCG 391506 30 100.0 38 .............................. TGCAGTGGAACAGTAATTGTTCAACTTAGCTCGTTCAA 391574 30 100.0 38 .............................. CGCTGTATGTTGCTGCGCTATATCCTTCTTTGTGAAAT 391642 30 100.0 38 .............................. AAACAACCCTCGTGACATAACCAGTGTCGTTGGTGACT 391710 30 100.0 36 .............................. TGTGAACCAAATACTTCTCCTCCTCACTCAACTCAT 391776 30 100.0 38 .............................. ATTCATGCCACAAACACTTTCTTGAATCAATAGCATAA 391844 30 100.0 36 .............................. GAGTATGGGAACTTGAACATTAGGTCTGCATTTCCT 391910 30 100.0 38 .............................. GAGTATGAATTTGGTTGGAGTTGGTTCTGTGATGGTAT 391978 30 100.0 37 .............................. CATTACCATTACTACCATTTATCTTAGTGTTATACCC 392045 30 100.0 37 .............................. CAAATATATCACCGAAAACCCCAACACACTAATACTA 392112 30 100.0 37 .............................. AATCCTCTATCATCGCACCAAAATACGAATCCGTTTC 392179 30 100.0 39 .............................. TCAACAGCTGGTAGAAGTTCTGCTCGACCTCCTTCTTCT 392248 30 100.0 37 .............................. GAGTATAACTCGCAAGCCTATGCCGCACCAACTGATG 392315 30 100.0 38 .............................. GTTGATAAGCGGCGCTGGAAGCTCGTTCGCTACACTGG 392383 30 100.0 35 .............................. GGTAGCGTAGTCACCGACCCGGTCGAGTTTGACAG 392448 30 100.0 38 .............................. CGATATGGCACCACGACAACGTCGTCGAGAAGATCCAG 392516 30 100.0 33 .............................. TTTCTACTTTGGCTGGCTTTGAGATAAGCGCAT 392579 30 100.0 39 .............................. TTCTGTCAGCAAAATCATAAAGCTCCCAATCTTTTGTCC 392648 30 100.0 38 .............................. CCGGGTTGGGAAAAAGCTTGTTTTCAAAATTCACGTAC 392716 30 100.0 37 .............................. TAGAAGAAGATGAAAAGGGAAGCGTTTACGAGAAAGT 392783 30 100.0 36 .............................. ATTATAAAATCAACACTCGCAGATTTATCAACATAA 392849 30 100.0 37 .............................. TATCGAAAATGTATTCATCACTATCAATATAATAAAA 392916 30 100.0 38 .............................. GTTGTCCTTTAGGGCGGCGTTGCTGACGTCGATCGGGA 392984 30 100.0 37 .............................. CTATATGTTACGCTCTTAGTGTTTATAAACTTTTCTG 393051 30 100.0 39 .............................. TCACTTTTCTTCATTATCTAATACGCATCCGCCCTTTAT 393120 30 100.0 38 .............................. CAAGGTCAAACTGGTCAATTGGTATCTCCTCATCCTTG 393188 30 100.0 37 .............................. GTTGTTCCTTGCGCGCTCCTTCAGGAGCTCGACCTCC 393255 30 100.0 37 .............................. TGTGTTCTTTATCGCCTTAGCGTAGTCGAACACCATC 393322 30 100.0 38 .............................. CACCAGGTTCTTCAGCACACCTGAACTGAAGGCATAGA 393390 30 100.0 39 .............................. CCGCCTGGCTGACGGCGGGCTTTTGCTCTGCCGGAGCTG 393459 30 100.0 38 .............................. GTCCCTGTCCTGGCTGTCGTAGCACACTGTCTCACCGT 393527 30 100.0 35 .............................. AGCGGAACAGAGTGCGGTACTACGAGGTGGAGCGC 393592 30 100.0 38 .............................. ACGAGCGCGCCGCCGACGATAACAACCCCGTGAGGCGG 393660 30 100.0 37 .............................. CATGAACGACCCGGAGGTACGCAAGCGCGTGGAGTCA 393727 30 100.0 38 .............................. GAAAGAGGAAGAATCAGGAGAGAAAAACCTCTTCGAGC 393795 30 100.0 36 .............................. TCCTGAAGTCCTTAAACGCTCTCCCTATGTACTCTC 393861 30 100.0 37 .............................. TAAAAAAACAAAAACAAACAAACAAAAATAAAAAAAC 393928 30 100.0 39 .............................. CCAAAACCCTCTTCACATCCATCACAACCCACCTCACGC 393997 30 100.0 37 .............................. CCCTCATCCTCGTCATCGAATTCCCAAAAGCAATCAA 394064 30 100.0 38 .............................. AGTTATGGGACTGTTGGTAGTGTTATAAAGAGGCTTGG 394132 30 100.0 36 .............................. TTGTTGAAGGTTTGGCAGAGGATTATGAACTTTATT 394198 30 100.0 36 .............................. ATACTTCTTAACTATTTCGTTCGCTTTTTCTATTGC 394264 30 100.0 37 .............................. CAGGCGTCTGAACTGCCTGCTCGGTCTCGTCTTCAAC 394331 30 100.0 40 .............................. CATCATCACCCTCGAAATACGCCTTCGCAAACCCATTCGT 394401 30 100.0 39 .............................. CAAAGCCTTCAACACAGACGACACAAATGCGGTATTCAT 394470 30 100.0 36 .............................. ACACTACACCCACCGCTACCCAAACAAAAGAATCAT 394536 30 100.0 38 .............................. CTGAGGGCCTGGTCAGAGGAAAAGTCCGCCACCTCGGC 394604 30 100.0 39 .............................. GGGGAGAGAACATGGAAAAGGAGATAAAAAAACGGATAA 394673 30 100.0 36 .............................. AATGTGACTGGTGCTTGTGCTGTTAGTTGTGTTAGT 394739 30 100.0 4 .............................. AAAG Deletion [394773] 394773 30 100.0 36 .............................. AATGTGACTGGTGCTTGTGCTGTTAGTTGTGTTAGT 394839 30 100.0 37 .............................. TGGGTTTTCACCTCGTAGTAGGAGTTACCTATAAAAG 394906 30 100.0 37 .............................. AAGTTGGCTTGGACTGACGTAGTCACCACACTCTCGC 394973 30 100.0 38 .............................. CACAGTCTGGTTCTACCACAAAGACCCAGTCATAACCC 395041 30 96.7 37 .................G............ ATAACCGTGACTTATGAGGTAGACCAGCAGAGCGAAG 395108 30 96.7 37 .................G............ CGTATAAACCCCGACCTCCTTGCTTGTAATGTAACAG 395175 30 96.7 36 .................G............ TGAATTTTTCTTCCCCAAATGCGGCTGTCCTCGCAT 395241 30 83.3 0 ........C......C.G......T....G | ========== ====== ====== ====== ============================== ======================================== ================== 58 30 99.5 37 GTTGCAATAAGACTCTGAGAGAATGGAAAC # Left flank : AAAGTAGGCCGCTGAGGTTTTATGTTTTTCTGTATCATGCTTGGGCGGTTTTGATTTTGGAATTGTCCTTTCCGGGGGCTGTTTTTCTGGAGACCTCCCCGGTGGCGGCCCTGGAAGTCTTTAGTAACCTTTTGTTACTATCTAACATTTTGTTACAGGTTTTTGTGCGTTTTGTAACGAATTTTTTTCGGAGTCTTGAGTAGAGGGAGGAGAGGGCCCGGAATCCGGCCCTCCGGATGGGAATTGGAGTTTTTTCGAATTAAGGGGTTTAAAAGCCGTTTTTGCCTGTTCGGGCTCTTTTCCTCCCTTTGGAAGTCTCATGCTCATGGGAGTACATTGTGGAAAAAGCCCTGCTTGTTAGCTTTGTTTGCCGGGTTCGGCTTTTTGGTGCCTGGAAACCTGGCCGTCCGGGGGCTCTCTTAAGACCCCTCCACAGAAAAACTTATAAAATCCGGGGATTAATACAGTCTTGCAGGGAAAACCGAAGAAAAACCCGCCCT # Right flank : GACAAGAACACAGTTCTCCCCGGGCTTTGGTGGGAGTCTTAGGAAACTTCGAGGGGGTGTGGGGGACGGGACGTCCCCCCAGACCCTGAGAGAATGGAAACGGCCTGGGAACCCCGCCGGGTTGCGGGATTGCAAATAGAATCCACACCCCGACAGGGTGCCTCTTTTGGGAGCTTTCCTCCTCCGCTTTTCCACGCCGTAAACCTTCTTAAAGGAAATGCCTTAAACAGGAAAAGCCTGGGAGGTGTTGAAATGTCCGGCAGATTTGGGGGCAAAACCTGCATAGTAACAGGGGGTGCAAGGGGCATAGGTGCGGCGATAGCCCACCGCTTCGCGTCTGAGGGCTGTAGAACGGCCATCCTGGACGTTGACGAAGAGGCTGGAAGGTTAAGGGAGAAGCAGCTCACCTCGATGGGTTTATCGGCTAAGTTCTTCAGGGCGGATGTCTCCGTTGAGGGGGAAGTTTCCGAAGCAATTGGGAGGGTTTACGAAACTTTTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGAGAGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 41715-44477 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000004.1 Thermococcus zilligii AN1 TziAN1_4, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 41715 30 100.0 37 .............................. CGGAGGACAGGCCGGGCCTTCGGGGGGGCCCGGGGAG 41782 30 100.0 37 .............................. GTGAACACGTTCGCGACGTACCATGTTGTCTCAACGA 41849 30 100.0 37 .............................. CATTTATCTTGTGCTTTTTGAGGTTGCTAATCAGCTC 41916 30 100.0 38 .............................. TCTTTCATCGCTTGTATTATTCTTTCTCTTAGTGGGAC 41984 30 100.0 38 .............................. CTCTGCATCTTCCCAAGTAACCCACTCTCCCGTTTTCG 42052 30 100.0 38 .............................. AGCCCAATACACCTCGGCCCAATTTTCGCCCAGACAAG 42120 30 100.0 36 .............................. AATAATAGCACTTATAGGAACAACATCACCCTGCAA 42186 30 100.0 42 .............................. CATTAATCCCCTTCTTTATCGCCTCATCAACCGAACCACCAA 42258 30 100.0 38 .............................. TGTTTGTGGCGGCGCTGTTTGCAGCGACAGGCACAGGT 42326 30 100.0 38 .............................. AACCATCAACCGGTGGATTATTCGGATTATTATATAAC 42394 30 100.0 38 .............................. TCACCTAACTCCCTTATCATCTCCAACCGCTCATACAA 42462 30 100.0 40 .............................. AACCCAATAGTCACATCATCCCGCCTACCATAATGCGCCG 42532 30 100.0 37 .............................. CGACTACGACGTGGACTTCAAGGCATACAAAATACAC 42599 30 100.0 38 .............................. TCAGGCGGTGGTGGGGGCTTTATGGACATGGACAACAT 42667 30 100.0 41 .............................. ACCCACACCGTCGGCGTGGTCAGCCTGACTTTTCCCGGAGA 42738 30 100.0 39 .............................. AGCTCATCAGCACTTGACCTCGCCCAATCAGCAATCATA 42807 30 100.0 38 .............................. TAACCCAAAACCCTCGGAATATGCAACTCAGCATCAAC 42875 30 100.0 37 .............................. CCCACGCCTGAGTATCCTTATTCCACCAGTAAAACCT 42942 30 100.0 40 .............................. GAAGAAATCGGCAAACAACTACTTTTAGACTACAACGAAT 43012 30 100.0 38 .............................. TCCAGTGCGTGGGAGATATGGAAGGCCTGGCGGGAACT 43080 30 100.0 37 .............................. GGACACTCGGAGCACTCATGGAGAGGTGGACAAAGAG 43147 30 100.0 40 .............................. AAACATAAACCTCCACCATACCATTAACCATCTCATCAAA 43217 30 100.0 39 .............................. CACGGAGGCGGGCTATGATTATCTCGTCTAACTCCTTAA 43286 30 100.0 37 .............................. AAGTTCATCTTTTTCCTAACTTTTCATTTTTTTATTC 43353 30 100.0 43 .............................. ACAAAATACCACCCTAACCCTATACCACCTAACGCCTAACCAA 43426 30 100.0 39 .............................. GAGGGTCTGAATATTAAGCTTGGTGCGGGGGGTGAGGAG 43495 30 100.0 40 .............................. TGTCCTCACTATTCGCTTCTATTCTAACCTTCTTCCCTTG 43565 30 100.0 37 .............................. ATAACCGGCACCAAACCAGCAAACGAAACCAAAAATA 43632 30 100.0 39 .............................. GGGTTAGGTCTTTGAACAGTTCCTGTTCAGTTTCATAAA 43701 30 100.0 35 .............................. AAGACACGTATGACTGTCATTCACCATCCCCCCCA 43766 30 100.0 36 .............................. GGATCGACGGCGTCAGGATAACCGTCGGCCAGAGGA 43832 30 100.0 32 .............................. ACTGTCTTCTGAACTATTGTGTCGAAGTTCGC 43894 30 100.0 38 .............................. GAGGAACTTGCGCTCTTCCGGCTTTAAGTCCATAAAGA 43962 30 100.0 40 .............................. AGGAGACGATGAGACTGTTATATTCTGAGGTTAAGGTTAA 44032 30 100.0 39 .............................. TCACTTCAGCGTTGCCGTCTGGGAGCCTAACTATCCGAA 44101 30 100.0 40 .............................. TTTCATCTTTTCATAATCATAGTAAACGTATATCATGTTT 44171 30 100.0 42 .............................. ACCACCCCATTAACAAAACTCTGGATAAACTAATATGTTATT 44243 30 100.0 38 .............................. CATCTTATGCCAAACCATACACACCACCCTCCTACCTT 44311 30 100.0 39 .............................. GACTGTCGTCTTATCAAGGCTTACGTTCCAGCTGTTTAC 44380 30 100.0 38 .............................. GTATATACCTCCATCTTTTTTTGCTCAGTGGGGATATA 44448 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 41 30 100.0 38 GTTGCAATAAGACTCTGGGAGAATGGAAAC # Left flank : TTATAAGGATCCTTTCCAGCTTTTTTGGGCGTTATCAAGCTTATATGTCTTTGGTTCCAAAGTCTCCTGGTTAAACGGCGATTTAAACCTAAAGAGGCCTTCAAAGGGTTTTGGAAGTCTTTAGTAACCTTGTGTTACTATCTAACATTTTGTTACAGGTTTTTGTGCGTTTTGTAACGAATTTTTTTCGGAGTTTTGAGTAGAGGGAGGAGAGGGCCCGGAATCCCGCCCCCCGGATGGGAATTGGAGTTTTTTGCGTTTAAAGGGTTTAAAAGCCGTTTTTGCCTGTTTGGGCCCTTTTTCTCCCCCTGGAAGTCTCATGCTCATGGGGGTACACTGTGAGAAAAGCCTTGGGGAATGGTTTTGTCCGTCGAGTTTGGCTTTTTAATGGCCGGAAATCCGGCCTTTTGAGGGCTCTCTTAAGACCCCTCCACAGAAAAACTTATAAAATCCGGGAATTAATATGGTCTTGCAGGGCAAACTGAGAAAAAACCCGCCCT # Right flank : CAACTATTAGAACTTCATTACCAAACTCGAAAAAAATGTTGCAATAAGACTCTGGGAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 69502-66845 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000001.1 Thermococcus zilligii AN1 TziAN1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================== ================== 69501 30 100.0 39 .............................. GAGGAGTACGTGGATGAGGGCGAGATACTGACTTGGCTG 69432 30 100.0 38 .............................. TGATGTTAAAGTGCAGTAGGTCACTTAGGAATTCTCCT 69364 30 100.0 39 .............................. AAGGAGGGTAAACGTGACACTTGAGGGCCCCAAAATTAG 69295 30 100.0 37 .............................. CCGCCCCCTCCTCGTAGTCCTTCACCTGATGATAGTA 69228 30 100.0 37 .............................. TAAATAAGCATAATCGTCTTCAGTTACTAAAGTTAAA 69161 30 100.0 38 .............................. AAGAGGCTGAGAGGCGCTTATCAGCCGGAAATCAGGAA 69093 30 100.0 38 .............................. TGTTCAAACTGTTCAAATCATTTGAACAGTGGGGACAA 69025 30 100.0 37 .............................. CAATTTTGTTTTTACTTATACTTGACACAAAAGCCGC 68958 30 100.0 37 .............................. AGCTTCTTCTTTATTACCTTCTCATCGTCGTGGTTCC 68891 30 100.0 39 .............................. GAAAGCCGTTGACATTATGCCCAAACTTCAGAAATTCCT 68822 30 100.0 38 .............................. TCTTTTTTTGTTTTGGCTCAGTGGGATATACCCCACAT 68754 30 100.0 37 .............................. AATCACCCGCCCTACCAGTCCTATAAGCATGCTTAAC 68687 30 100.0 37 .............................. AGTGTTCGTTGTAACCGTTTGCCTTGAGGAATTCTTC 68620 30 100.0 40 .............................. ATCGTTCATTCATCCTCACCTCCAACAAATATTCCTTCCA 68550 30 100.0 37 .............................. GAGGCTCTGAAAAGGCAATATCGTAAAGCTCGACTGA 68483 30 100.0 39 .............................. TTGGGGCCTGGAATGTCGCCCCAACCTCGCTTGGAATTA 68414 30 100.0 36 .............................. GATATACTCCGTCATCACCATTATGCTATACGCTCT 68348 30 100.0 38 .............................. GGACTTAAAGCAGTATACTGACTTGGGGCGCCCTACTT 68280 30 100.0 38 .............................. TTTTTTGGCTCAGTGGGGATATACCCCACATCATTACC 68212 30 100.0 38 .............................. AGAAACCTGCCACTCGAACTGTCAAAAACGTCCAAACC 68144 30 100.0 37 .............................. CTCTCTGTTCGCACTGAGGTTGTCTTCAAACTCTGGG 68077 30 100.0 39 .............................. ACTTTTCAGCGGGAGAGTACGGGCACAAAGGCGGTTGCT 68008 30 100.0 38 .............................. TTCACGCCCCCTTAGAGCCAGGCACCACTACCGGATGA 67940 30 100.0 40 .............................. GCTCGGGTGTTCTTTTCTAATCTGTTTGACGACTTTTTTT 67870 30 100.0 37 .............................. TCAGGTCTTCGAGCCCGGCCAGCGCTGGAGGCAAGAC 67803 30 100.0 41 .............................. CGCACGTGAGAAGAGCAACGTGCCACCCTCATCGATGACGA 67732 30 100.0 37 .............................. AGCTCAACACGACCAGCGCACAGGTCGTCATCCCGGT 67665 30 100.0 37 .............................. TCCCGAGCCGGGGGCCCTCCCACCTGCGTACCCCCCG 67598 30 100.0 43 .............................. GCCAGAACTACCGACTCCGGGAAGACTTTCTGCAGGCACTGTA 67525 30 100.0 38 .............................. CGCCTCAAGGAGTTTGGGCCTCTTCGCTGCTTCCGTCA 67457 30 96.7 39 ........................G..... AAGCTTCCCCAGCTCAATCACCAGCGAATTCTTCTCCTC 67388 30 93.3 39 .................A......G..... CGGGATTTTGAGATGCTTCACCCTTTCACCCTTCACTGT 67319 30 93.3 39 .................A......G..... GGGGTCATTGAGTGTGGTCATGAGCCCGGCCTGGAAGAA 67250 30 93.3 37 .................A......G..... GCCGTTCTCTCTTTTTCATCTCAGCCACCTCCTCCGA 67183 30 93.3 36 .............C..........G..... GGGTAAGTGAAGATCCATTCCTCATCCCCCTTCAGT 67117 30 96.7 37 ........................G..... CGAAGTCTTTTGGTGTTCTTGGGGCGACCATCACTTC 67050 30 90.0 37 .................A......G....G GTCAGCTCATCACGCACTGCAGCTGCTGTTATACCTG 66983 30 86.7 79 ...C...........C.........T...G ACAAGAACACGGTTCTAACCGGGCTTTGGTGGGAGTCTCAGGAAACTTCGAGGGGGTGTGGGGGACGGGACGTCCCCCC 66874 30 80.0 0 CAGA.G.C...................... | ========== ====== ====== ====== ============================== =============================================================================== ================== 39 30 98.0 39 GTTGCAATAAGACTCTGGGAGAATTGAAAC # Left flank : CTGGAAGCTCAGGGAGCTGGGCTTTGAGGTCATATCACGGTGACGTTCCTTTTATTGAGATTTTGCCCTTTTTGGCCGGTTTTACTGCGATTTAGACGGCTCCGGGCTCTGTGGAAGTCTTTAGTAACCTTGTGTTACTATCTAACATTTTGTTACAGATTTTTGTGCGTTTTGTAACGAATTTTTTTCGGAGTCTTGAGTGGAGGGAGGGGAGGGCCCGGAATCCCGCCCCCCGGATGGGAATTGGAGTTTTTTGAGTTTAAAGGGTTTAAAAGCCGTTTTTGTTTGTTTAGGCCCTTTTTCTCCCTTTGGAAATCTCATGCTCATGGGAGTACATTGTGGGAAAAGCCCTAGGGGAGGGTTTTGTCCGTTGAGTCTGGCTTTTTGGTGCCTGGAAATCCGGCCTTTTGAGGGCTCTCTTAAGACCCCTCCACAGAAAAACTTATAAAATCCGGGGATTAACATAGCCCTGCAGGGAAAAGCGAGGAAAAACCCGCCCT # Right flank : AGAGAATAGAAGCAGGAGGACATAAACAAAAGCTCACGGGACGGCAAAGCCGAGTCCCCGGAGCACCATCCTGATGGCCAGGAGGGCCAGGACAACCGCAAAGCCCTTGCTGAGTGAGGAAGCCCTGGTTCTCTTCGCTATCCTCGCACCTATCTGGGCGCCGATTATGAGGCCCGGCACGAGGAGGAGAAGCCACTCCACCTCAACGTTGCCCATCATGTAGTGCTTCAGGGCCCCGCTCGTTGCGGTAAAGACTATCGCAAAGCTCGAGGTGGCTACCGCATAGTGTATCGGCATGCCCATGGCGGTGAGGAAGGGCACGTTTATAACCCCTCCCCCGACGCCCAAAAGCCCGCTGGCTATCCCCGCTATGAGGCCGCCGAGGAGGATCAGCCCGTAGTCGAGCTTTACCTCCTCAATCCTGACCTCGTGCGGCTCGGCGCTCTTCTTCCTGTAAATCCTTATCGCGACGAGGAGGAGAACTGTACCGAAGATCACCT # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTGGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 496683-496182 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000001.1 Thermococcus zilligii AN1 TziAN1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================== ================== 496682 30 100.0 42 .............................. CCCGCTCCAGAGGGCCTCAGGGAAACTTCCCGTCGTCGGGAG 496610 30 100.0 67 .............................. CTCGAAGCCCTCCCTCCGGAGGGCCTCGACAAACCTTTTCAAATCCGGATCCGACTGTACTTTTTCC 496513 30 100.0 42 .............................. CGGCACATACCCGAGGACCTCCTTCCTGACCTCTACCGGGAT 496441 30 100.0 48 .............................. GAAAACCTTGAGTTCTGATGGGTGGTTTATTACTCTGTCGTCCTGTAC 496363 30 100.0 46 .............................. TTAATTCTCCAGGAGTTTGAAATAGGCTTTCAAAGTAACAACTCTG 496287 28 83.3 48 ........G.A...T.-...-......... TTGGAGGGACCTGGTACGCAGGCCCCTCCAGCTCCCGTCGCTGGAGGG 496211 30 73.3 0 .......A..CG.C....C........GGC | ========== ====== ====== ====== ============================== =================================================================== ================== 7 30 93.8 49 GTTTCAGGACTAGTGAAGAAACTTTGGAAA # Left flank : TCTCGCTTTTAGTTGCTCAAAAACTGAAAAGGGGGCCGCAGGACGGTTTTCGCATTTTTACGTTACATAGAAGTAACCAGGTGCGCGTTTTTGCAAACAGAAGAGGGAGACAGCCCGAAACTGCTAAAAACGGCTGAAAGGGCTTTTGTTCGCCGGGAGAAGAAAAGCGGAAAGGCCTTTAATGCCCGGCAAAACGGGGCATTTTTGCTGGCTTTCCAGGCAAAAGCAGCCTTTTCCCCGGAGATAGATGGTGCAAACTCAGAGGAGTCATGTCGTCTCAGCTTTTTGGGCATGTAAAAGTTGCCCTGATAAAGACGGCCGTTTTGTTGTCCTTTTAGTGGCCAGAAGGGCCGTGGGAGGCCCCTGTTCTATGTTTTCCAACGGGGGTTAGTCTGGGAGGGGCGTTTTAAGGGCTGATTTTTCGCGGCCTTAGAGGAGCGAAAAGCTTATATAGGGGTTTGTCTTTACTTTATTTGCCCGACAGGGCGAAAAAGTCTATG # Right flank : CATCGGGGCCGGAGATCGGGGGCCCCTTGAAAAAGGGCCGGTTCTGCCATGCCCCCGGATCGGGAAGCAGTGACCGCGGGGCTGAAGTCCCGTCTCCGGGTTTCCCCGCCATGGCGGGCCCGCCGGTGCTTACACCGGGCCATGCCGGTAGTTTTTGCCTCAAAAGTTGCCCCGCCCCGGTTCCCATGCCCCCGCCTGCGCGGCCTCTAAGCTCCCGGGGGCCACCACTGAAACTTTAATAAGCACCTTGCCCAGCATATGGCGGTGAGCTGGATGGAGAGCAAGAGGCTCTTTCGCTCAAAGAAGAACCGCATGTTCCTGGGTGTCCTTGGTGGCTTGGCTGAGTACCTTGACATTGACCCGGCCCTGGTGAGACTCATCTTCGTCGTCCTCCTGGTCTTCCAGCCGGTTGCGATGGCCCTCCTCTACTTCCTCGCCGCCCTCGTGATCCCTGAGGAGGGCGAAGGGGAGAAGCCCGTCGAGGAGAGGCTCAACGACGT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGGACTAGTGAAGAAACTTTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 688498-687862 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000001.1 Thermococcus zilligii AN1 TziAN1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================== ================== 688497 32 100.0 41 ................................ TTCTATCGGCAGTTCAAGAATATCCATGCCAGACTTGTTTA 688424 32 100.0 47 ................................ TGTATTGGCTCGTCTCCATCGAGGTATGGTAGTGAGATAATTACTTG 688345 32 100.0 46 ................................ GGTGCCTCCCAATTGTCACGTACTTCATTCTTCTACCCCCATACGT 688267 32 100.0 44 ................................ GGATCATCGGTGGAGTTATAACGAAATGACTGCCATGAGGGAGG 688191 32 100.0 41 ................................ TGGTACTACATGTCAAATCCGGTGTCACTACCGTAATCCTA 688118 32 100.0 43 ................................ TATTTACTTCTGTCTTGATCAATTTCTCTTGCTTCTATGTCGC 688043 32 100.0 41 ................................ GAAATCGTTGCCGCCATTTCCCTCCCTCCGTACTTTTTTCA 687970 32 96.9 45 ............................G... ACCCGGCGTCCCTGTAGAAGAAGTACTTGTCAAATGGCTTCATGT 687893 32 93.8 0 ............................G.G. | ========== ====== ====== ====== ================================ =============================================== ================== 9 32 99.0 44 GTTTCAGAACCGCCTTAAACAGGCTTGAAAAC # Left flank : TTTCTCCTTCGGTGGCTGAAAAACTGAAAACGGGGCCGCGGAACGGTTTTCCCATTTTTACGTTACATAGAAGTAATCAAGTGCGCGTTTTTGCAAACAGGAGGGGGAGACAGCCAGAAACTGCTAAAAAAGGTAGGGAAGGCTTTTGTTCGCCGGGAGAAGAAAAGCGGAAAGGTATTTAGTTCCAGGTCAGAAGGGGAACTTTCGCTGGCTTTCCAGGCAAAAGCAGTCTTTTCCCCGGAGATAGGTGGAGCAAACTCAGAGGAGTTCTATCGTTTCAGCTTTTTAAGCCTGTAAAAACTGGTTAAATAAAAACGGCCGTTTTGTTGTCCTTTTAGTGGCCAGAAGGGCCGTAGGAGGCCCCTGTTCTGTGTTTTCCAACGGGCGTTAGTCCTGAAAAAGCTTTCCTGGGGCTGATTTTTTGCGGCCTTAGAGGAGCGAAAAGCTTATATAGGGGTTTGTCTTTACTTTATTCGCCCGAGGGGGCGAGAAAGCATATG # Right flank : ATGGCCACTGGGTCGACCTGGTTAAGGTCGAAATCCACGAACACGAGTTTCAGAACCGCCCCAAGCGGGCCGGTGCCCGGGGGTGCCCCGCGTTTTAGATGGACTTCTCCACCGCACGGGGGCAGTTTCCAAAACTGCAGGTTGGTTATACAGGGGTGGTGATGCCCGTGGGGATAAGGTGCTTCACAACCGCCCAGAAGGTTGGCTACGCGGCACTCCTTGTCCTGGACGCCCTCCTGATTCCGGTGTTTGGGCTCGGCCTGGTACTGCTTTACTACCACGTGTTGTCCATACGCCGAAAGCAGGAGGATTGCAGGCTCATGGAAGAGCACGCAAAGCTCACCGCCGAGGAGTTAGCAAAGCGCACCGCCGGCCGGTGACCCTTTCTTTTTTAACCCGGAACCAGAAAATTTATAAACCCCAAGGCCCGAGTTACCCCGCCTGAGGGCGCCTGCACTCTTCTGCGCGGTGGTCGCGGTGTACGCAATGGATTTTGATTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCGCCTTAAACAGGCTTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 4 691525-691107 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000001.1 Thermococcus zilligii AN1 TziAN1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 691524 30 100.0 51 .............................. GCGGATAGCTACTTCTTCTGCTGCTTTCTTGAGCCCCTCGAGACCCTCCTT 691443 30 100.0 48 .............................. AAGAGGCCTACGGCCTCAGTCTTGAAAGTATATACCGTCACTCCCCTC 691365 30 100.0 46 .............................. CATAGAAGAACCCGTTGCCATAAACCGCGTAGACCTTTATTTCTCT 691289 30 100.0 45 .............................. CAAATGGTGAGGGCCCAGGCATCCCCACGACGCTCTACTTTTGCT 691214 30 100.0 48 .............................. CTGCCGGAATTCAACTATCTGGGCGTGCGCGCGCGTTTCGTCGGCCTC 691136 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================== ================== 6 30 100.0 48 GTTTCAGAACCAGCTTGCAGTTTTGGGAAC # Left flank : AGAACGGGGAAAACCACGGGCGATAGGTGGGGCGGTTTCTCCTCAGGTGGCTGAAAAACAAAAAAGGAAGGCGGGGAAGCCGTTTCGCATTTTTATGTTGTATAATAGTAACAGGATGAACGCTTTTGGAAACAAAGGGCTGGGCCTGCCCGAAAAGGGGATAAAAACGACGAGAGCCAGCCACGGGCCAAAAACGGGGCGTTTTGGTAGTTTCTCCGGCAAAAACCGGAGTTTTCTTTCGTGATAGGTGGAGTAAACCCAGAGGGCCTCTGGAATTTTGGGTGCCCGGCCCTCCAGGGGCTAAATCCTGGTGAACAGCCACTAAAACCGCCTTCTTACGCCAGGGGGTGCCCCCGGAGGCCCCTGTTCTGTGTTTTCCAACTGGGGTTAGTCTGGGAGGGGTGTTTTAAGGGCTGATTTTTCGCGGCCTTAGAGGAGCGAAAAGCTTATATAGGGGTTTGTCTTTACTTTATTCGCCCGAGGGGGCGAAAAAGTCTATG # Right flank : CTCCCCGCCTCCAGTGACAGGGAGGCGAGGGTACCGGGGGGAGGCCCAAAACAGGAACGGCCCCCCCGTTTCAGAACCGGCGGAGCAACTTCAGGGGGCGCGTGCCGGCCGTCCCCGTTGGGGGTCTCAGAGTCGCAACCTTTTTAATCCCCTGGGGGGTTATTGGGTTCCGGTGTCGCGTGGTGAAGTACCCCCTCTTCATCACCCAGCACGGCAAACTCGAGAGGGAGGGCAACTCGCTCTTCTTCGTCGGCGAACTCGTTAAGAAGGCCCTCCCCCTGGCCCAGATTGCCGAAATCCACTGTATGGCAAGGGTCTCGCTGACAAGCGGGGCCATAGACCTGCTGAGCGAGAGGGGAATCCCGGTGCACTTCTATACCACCGGGGGCGACTACAAGGGCTCCTTCATCAACGACGCCTCACCGAGGGGGAAGCTCCACCTGGGCCAGGCCGAGCACCACTTAGACCCTGAGAAGAGGCTTTACATAGCCCGGGAAATC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAACCAGCTTGCAGTTTTGGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 704451-702281 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000001.1 Thermococcus zilligii AN1 TziAN1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 704450 28 100.0 40 ............................ TAGCCCCCGCTGCAAGGGCATCCTCTTTCTTTTGGAAGAT 704382 28 100.0 49 ............................ TATGGAGGAGAGCGAGGTGAGAAACAATAGAAATGCTCGTCATTTCTTG 704305 28 100.0 48 ............................ TCTACTCGTCAATGTTTACTTCTTTTTTCTCAGCAAACTTCTTACCAA 704229 28 100.0 48 ............................ TCCTTAGCCCCTGAAAGAGGCTAACAAACTTCTCTGCTTGCTCCTCCG 704153 28 100.0 52 ............................ TCCCGTCCCCTCCCCGGGCGACACTACGCCTACTCATAGGCGTGGGGGAGTC 704073 28 100.0 46 ............................ GACTCTCTGACTGGAATATGCGCCTCTACCCACAACGTATCCTCCC 703999 28 100.0 46 ............................ GCAACAACATCCGCCCCGGCCGCCAGAGCGGCCTCTTTTGAGGGAA 703925 28 96.4 47 .....................G...... GTACCTCTTCCACCTTCGCCCAAACATTGGTCAGTACCTTCAGATGA A [703908] 703849 28 100.0 48 ............................ GTCAATGCCTGCAACCTCGTAGATTGCAAACCTGTTCGCCAATGGCAA A [703832] 703772 28 96.4 45 .....................G...... TCCCGGGTCCCTCTGATGAGGTCTATATGAACCTTGGCTGGGTAC A [703756] 703698 28 92.9 45 .........C...........G...... TACGGTAATTCGGTGTTATGCTTATCTTTGCTGTCGATCCTCCCC A [703682] 703624 28 96.4 45 .....................G...... TAGCCTCCTTAGCGCCTCCGACCAATGCATTTCCCTTCACCTCCA A [703608] 703550 28 96.4 44 .....................G...... GTAGCTCTTCAAGGCAGTTCCTGATATTCAAGAACCTATCAAGC A [703533] 703477 28 96.4 46 .....................G...... GTCCGTGGGGAAAACGGCAACCATTGCCCTGTACTTGTTTATGGTC A [703460] 703402 28 100.0 44 ............................ CTCTATCCTACCTGTGTAGGTTCTAGACAGGGCTTATACGCCAT 703330 28 96.4 44 .....................G...... GATGCTCTTCACATCAGGATACAACTTGCCAAACACCCGCTTCA A [703313] 703257 28 96.4 48 .....................G...... GTCGAGTTGGATGGGCGTTTTGAGTCCCTTATAAAATTTTAGTTTCAG A [703240] 703180 28 92.9 48 .....................G.....T TCAAGTAGTGACCTCCGAGTCCAAGAATGAAAGCCGCTTCGCAAAATC A [703164] 703103 28 85.7 36 .........CA..........G.....T CCTGTATCTATTTCAAATACTGGCCCGAGCTTCTCT G [703081] 703038 28 92.9 43 .....................G.....T CGTGTACCGATGCCTTCCGATAGTGATGAACCCCTTTTCCATC 702967 28 92.9 39 .........C...........G...... TGCTGGGGACCAAAACGTCGGCCCCCGTCGCGGCAGCGT A [702951] 702899 28 92.9 50 ...........A.........G...... TCTGTCATCGATCACGTATATGTTGTCCGGGGTTTGGCGGTACCTACATA A [702883] 702820 28 96.4 41 .....................G...... CTTCAAAACAAGACCCACCCCGGTTCACTTCAATTTCGAAG 702751 28 100.0 43 ............................ TAAGTGCAACCTCCTACTCGTAACAACTTCAAAAACCCTGAAC 702680 28 100.0 44 ............................ TTCCATTGCCATCCACTGGGTATAAATGAACGCTGTTTGCAGCC 702608 28 96.4 47 ..........A................. TCTGCAAGCCACCTAAGGTATTCGGACACTCTCATCAGTTTTTGCTC 702533 28 96.4 46 ..........A................. TCTGCCAGAACTTCTGCTCCAACTTTTTCCGGGAACTCTACCTGGA 702459 28 96.4 44 .....................G...... CCCCTCTTACGTAGAGAAGCCCCATTAAATCGTCCAACACTTGC A [702442] 702386 28 96.4 46 .....................G...... GCGGCCCACCACATACTTCAACCCCATCCCTCCATATGTTTTTCAT A [702370] 702311 28 78.6 0 ....T....C...........C...GGG | C,AA [702289,702291] ========== ====== ====== ====== ============================ ==================================================== ================== 30 28 96.2 45 GTTTCAGAATCGCCTTGGGGCTTGGAAA # Left flank : TTTCTCCTCCGGTGGCTGAAAAACAAAAAAGAGAGGCGGAGAAGCCGTTTCGCATTTTTACGCTACATAGAAGTAACCAGGTGCGCGTTTTTGCAAACAGAAGGGGGAGACAGCCAGAAACCGCTAAAAACGGCTGGAACGGCTTTTGTTAGCCGGGAGAAGAAAAGCGGAAAGGTATTTAGTTCCAGGCCAGAAGGGGAACTTTCGCCAGCTTTTTTGGTTAAAGCAGCCTTTTTCCTGGAGATAGGTGGAGCAAACTCAGAGGGGGCCTGTCGTCTCAGCTTTTTAGACCTTTATAAGTCGCTTTGATAAAGACGGCCGTTTTGTAGCCCTTTCAACGGCCTGGGGGGCCGTGGGAGCCCTCTGTCCGGTGTTTTCCAACGGGCGTTAGTCCTGAAAAAGCTTTCCTGGGGCTGATTTTTCGCGGCCTTAGAGGAGCGAAAAGCTTATATAGGGGTTTCTCTCTACTTTATCTGTCAGAAAGGGCGAAAAAGCATATG # Right flank : CTAACAACAGCCCGTTTGGGCCCCGGTTTGTCTTCGAGGTCGGGTTCCGGTTTTAGGCCCGTCTTAGCTGAAACCCCGGCGGCACCACTCAAACTTTGCGCGTTCGGCCGTTTCCAAAGTTCCGGATATGGTCTTAGCAGACCCGGGAAAGTCTTCCTGTGGTATAGTTCCCTCGCCGGTATTGATTGCGGGGCCGGGTACCCCAACGGGGTGTCAAAAGAGGGTGCGGAAGGTCTCCAAGAAGGCAAAAATAGAGCCCGGCAAAACGCTTACGTGGTATCCCCCTTCGATGAAAAGGGCGAACCGGCGTTTTCCATAACCGTCGACGGCGGCACCGCCCGGGCCCTGCACGGCGGGCCTCTGGAAGCACGGGGCTTTTTCGTGTCGTGAATTTTCCTGTACTACCATGCGGGTGAGGAACCCGGTGGCGGCACGGTGGCAGGGGCGGTAGATCACTGCCATACCAAAACATTTTTATACCTAAGTGCATTAAGATGTGG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAATCGCCTTGGGGCTTGGAAA # Alternate repeat : GTTTCAGAATCGCCTTGGGGCGTGGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 6 720826-722155 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLF01000001.1 Thermococcus zilligii AN1 TziAN1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 720826 28 92.9 41 ..........G.....A........... GGCGGAGTAAGTGGTGTTGACGCCAGCCCCACGCACTGTGA 720895 28 89.3 43 ..........G....AA........... GCTATTCCTGGGTATATTGCATTGACGTAGTCCCTTGAGTTGT 720966 28 89.3 41 ..........G....AA........... GATCCTTGCCCACACATTATATAGAACATCAATGAAATCCC 721035 28 89.3 42 ..........G....AA........... GGCCAACCGGAGCGCGGCCTCTTCCGCGGCCTCTTCCGCGGT 721105 28 92.9 39 ..........G.....A........... CACAATCATAGACTCTAAATCATACCCAAGAACACATGT 721172 28 100.0 42 ............................ CATCCCAAAGGAGTCACTGGGCACGAACCGTACAGGGGTTTT 721242 28 100.0 37 ............................ CGTCCAAACCGGTTCAAGAACGACTCTGTTCCATTTG 721307 28 100.0 41 ............................ CAACGATTGGCGGATAAGGACAACCTTGACCTCCTTATCCG 721376 28 92.9 42 ..........G.....A........... CCATATAAATCCACATCGCAAACTTCTCCAACTGCTTCTTGT 721446 28 96.4 42 ..........G................. CGCCTTACTCACCTTCATTGGGTCACCCCCAAGAAATGCTGG 721516 28 96.4 40 ................A........... CATGAATGGTTTGGGGAGTTACAGGAGCGGATAAGGAAAA 721584 28 96.4 42 ................A........... CGTGGCATACGGGAGATACAACTTTATCCTCCCATTCTCCAC 721654 28 92.9 39 ..........G.....A........... CCCACATCCTTGACTTGCTTGTCCGTCCTGACGACCCGT 721721 28 96.4 38 ................A........... TATAACAACCTTGTCAAAAATATAAGTGTCATCATCTA 721787 28 100.0 39 ............................ CACATTACCCCTAAAGACGCTAATTCGCTCTTTTTCACC 721854 28 96.4 42 ................A........... CTTGGTGTATTTGTTGGGGTGTTTGTGGGTGTTTTTGTGGGT 721924 28 100.0 40 ............................ CCCCTGCACCGCTGCAAGAAGGAGAAGTGGGATCTGCTTC 721992 28 100.0 41 ............................ GAGAGCCTCTTCGACAACCCTTCTGAACTCCTCATCCGTAA 722061 28 92.9 38 ................A.....C..... CCGCTCCCAGAAGATCAAAAACTTCCTCTCTTCCGGGG 722127 28 75.0 0 ...C...C.....G.TT.....G...C. | G [722146] ========== ====== ====== ====== ============================ =========================================== ================== 20 28 94.5 41 GTTTCCGTAGAACAGGGTTGTGTGGAAA # Left flank : AGCACCGGCCTTTCGGTTTTTCAGGTTTTCGGCTTCTTCTTTTTAGAAAAAGGGGGCCAACGTCCGGATCCCAGAGCATGGCCGGGGGAGCCCTTTAAAGGGGCAGAGAACCCCTCAGGCGGTCGTTCAGGGCATGCGTGAGGAACCCATCGAAAGGTTTTATGGACGTGAAATAGAACTGCCATCCGGGGGAGAGGAAGGCCTTAAATCCAGAGAGAACGTTAGGGCTGGGAGCCCGAAGGGTCAAGAAAGGTGGGTAAAACATTAAAGCAAATTTTAACCTGATACCACCGAAAGTTTTTTACAGGCGGCCCTTTGATTTTCCAGTTTTCTGTCAGTGGCCAGGGGATTTCTCTGCACCGCCAGCAAAGGCTTCGGAGGAGGTTTTATTTTTTGCGCTGGATTTATAAATGCGATGCGTTGCCACGGGTTTCCATGATAAAGCTTAAATAGGAGTTTTGACATCCCTTATTTTCGGGAAAGGTGGAAATTTCCCGAAG # Right flank : ATTACGGAGGCGCGGGACAGTGCTGCGTGGGAGCGCCGGCTCCCCTTCGGGGTTCCCCCTGTTTTTGCCGCAGTTTTCGTGGAAGGGTGTCGCACGGGGACAGCCAGAGCCCCACAGAGGAAGGTGCCGGCGGTTAGCCCCCGCAACCTCCGGATCGAAAGGCTTATAAGTGACATGTCGTTCGATATATTGGTGGTATCATGGAGCGCTCTGACTTCAGGGGGGGCCTCAAACTGCTCGTGCTGAAGATTCTCGCAGAGAGGCCCATGCACGGCTACGGCATAATGGCCGAGCTCGAGAGAACCTACGGTATTCCGCACCCCAGCCCGGGGACGGTTTACCCGATGCTGAACTCCCTGAGGAGGGCCGGGCTCATCGAGTTTGCCGGCGAGGGCAAGAGGGACAAGAGGCTTTACAGGGCCACGGAAAAGGGGAAGGAATACCTCAGGGAGCACGGGGCGGAGATTAAAAAGGCGGAGGAGCTCACCTACAGGTTCAGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACAGGGTTGTGTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //