Array 1 4781-8492 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMHH01000012.1 Flavobacterium columnare strain CC1808 NODE_12_length_98454_cov_241.030810, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================== ================== 4781 36 83.3 86 .AATATC............................. AATTCCATCTTCTAAATCAATATCTTACTAAAATGGTTTACAAACACCTAGTTACTATTTGTTAGAGGTGTGTTTGTGAATCTCCC 4903 36 97.2 30 ......A............................. TGATTATAAAAAACTCGGAAACTCTTGCCC G,C [4906,4909] 4971 36 100.0 30 .................................... AATACATCTAAATAATCTTTTAGACGCCAG 5037 36 100.0 30 .................................... TTCTATTTCTAAAACCCCATCTTCTATTAT 5103 36 100.0 29 .................................... CGCGAGACCTAGTTCTATTGCCTGCACGC 5168 36 100.0 29 .................................... TCGGCGGTAAGAAGAAAGAGGGCTTGAAT 5233 36 100.0 30 .................................... GTCTACAAATCGTTCTACTAGTGTTTCAGT 5299 36 100.0 29 .................................... ACGCTTCTAATTCTGAACCATATGTCCCC 5364 36 100.0 30 .................................... ATTTCGCTTAATAATATCTTTGCAAAATTA 5430 36 100.0 29 .................................... CCGTCCGTACAAGTAGTTCCAGAAACATC 5495 36 100.0 29 .................................... TTTTTCTGAAAACTAGCAAACCACAAATA 5560 36 100.0 30 .................................... CATAAAAAGATAAGACATGAAATTTCCATC 5626 36 100.0 30 .................................... CTTTTCCGTAAACAATAGGAGTTTCATTGA 5692 36 100.0 30 .................................... CTATTTGCAATAAGGCAGGAATAATAGTCG 5758 36 100.0 30 .................................... TTATTACTATTAACGTAGAAGGTACCACGA 5824 36 100.0 30 .................................... TCAGGAAGAAGTTTCCGCATCCATCTGGTT 5890 36 100.0 29 .................................... CTCAAGAACTTTTGGTGACTCACCAGTTT 5955 36 100.0 30 .................................... TTGTATTTTGTTTTTAGCTTGAATCTTTTT 6021 36 100.0 30 .................................... TAAGGCCCTTACATTAGCTCGAAAGGCTGA 6087 36 100.0 30 .................................... GTTTTGGTTAAACGAAGTTTAACACGTTGA 6153 36 100.0 30 .................................... TGTTGGAACAAATGTATTAGCGGGAACCGT 6219 36 100.0 30 .................................... TCTCTATTTTATCAACTACTTGCATAAGAT 6285 36 100.0 30 .................................... GGCTTTTCTTACATACAACACCTCTTTATT 6351 36 100.0 30 .................................... ATTAGCATGTTCTAAAGCTAAATTTAACAT 6417 36 100.0 30 .................................... GAAGGATGATCCAAAAATGAAAAAATACAT 6483 36 100.0 30 .................................... AAATTTGTACGAGGTTGATGAGTTTAAATT 6549 36 100.0 30 .................................... AATATAATCACACGGCGCAGCTATATAGTA 6615 36 100.0 30 .................................... TTGCGCCTTCTAAATCCCCCAAAACCAAAG 6681 36 100.0 30 .................................... GGTCCGTGCCAGCAATTGTGTGAAGTGTCT 6747 36 100.0 30 .................................... TTGCTTTCAGGATTTTCTCATTCAGGTAAT 6813 36 100.0 30 .................................... AAATCCCCTGAAGGGAAAGTAAATTTACTA 6879 36 100.0 30 .................................... TTCATTTTGTCCCCTATTGAAGCCGAGGAG 6945 36 100.0 30 .................................... CATGCTCCCAGCGTATACGGCAGTGGAACA 7011 36 100.0 30 .................................... TTGTTAGGGTTGCCGGATAAATATGCTATT 7077 36 100.0 30 .................................... CATAGCTGAAGGAGTAAACTAACTCTTGTC 7143 36 100.0 30 .................................... AAGCAGGAATTTATCGTAATAGGAGTTAAT 7209 36 100.0 30 .................................... CAACCACTTGTATATTTTACGACCATTCCA 7275 36 100.0 29 .................................... TAGGCATTCAACGTGATTTCAGTAGAATA 7340 36 100.0 29 .................................... AAACTTTGGATCGAAGAAGTTGCACTGAA 7405 36 100.0 29 .................................... CAGAATTAAGTATCTTTTCATCTGATCTA 7470 36 100.0 30 .................................... TAATCATCTGTATTGTCAGTTCTTACGATA 7536 36 100.0 30 .................................... TTAACATCAATAACAAGCGGGTCGATATAC 7602 36 100.0 30 .................................... TCAATTACCCAAGGAATAATCTCGTTCACT 7668 36 100.0 29 .................................... TTTTGCTGTCCACGTCATCGACTACAATG 7733 36 100.0 30 .................................... ACCGTATGAAATGCTTTTCACCTCGATAGG 7799 36 100.0 30 .................................... CGAACTGCGTAAGCATCTTGCTACTGCGCC 7865 36 100.0 29 .................................... ACGCTAGCTGATGCTAATGCTCCAAGAAC 7930 36 100.0 30 .................................... CTTTTGGTGTTTTTATTTGCTAATACTTCT 7996 36 100.0 30 .................................... TTTCTTGCATAATGAATTAGTATTTGTTTA 8062 36 100.0 30 .................................... ACTATGCTCTTGGATTTGAGCGATAAAGTC 8128 36 100.0 30 .................................... TGAGTAGGTGCCCACGAATGCGCCGCACGT 8194 36 100.0 30 .................................... TTTAAATTCAATAACAAGTACAAGAGACTC 8260 36 100.0 29 .................................... TTAACAACTACTGCCTTACTTTGGATGGC 8325 36 100.0 30 .................................... TATGTAAGTCAAAGCTGGTGCGCCAAACGA 8391 36 100.0 30 .................................... GTTGGCATATCAGGATAAGCAACTTTATTA 8457 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================================================== ================== 56 36 99.7 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : ATAAAAGATAAAGAATTAGTTAATAGACTCTATAAAGTGATTGCATTTGAAAGTGATGGAAGAATTCAATTTAGGCATCACAAAACAGCTTTGCAACAAAGTAGTACAAATAAAGAAGAGCTAACTATAGTAAAATTTATGGCAGATAATGGGTTAAAAAATTCTCAAATTGATTTTACAAATCCATTGCCTTGGTTAAGATTAACAATGTCTAATTTTAACTTTTTGTTGAATAAAAAAGAGTTTGAAATTAACTCAATAGGAAAGATTTCATTTTATTAATAGAAATAAATACCAATAAGTAATTTTAAAATACATCATGTTTTTAAAACTTATAAAGCTTAGAAGTTCATTGACATTTTAGTTTTTATATATTTTTAGGAGTCAAAATATTAATATTTAATGATATAACAATTTACTGTTTTTGATTTGAGTTTTATTATTGGATCGGTGTTGTGGTTTACAAACACCAAGTTACTATTTGCTATAGGAGTGTTTGT # Right flank : TAGTTGAGGTGTAATCTTCTGATATTAAAAGAATTAGTTTAAAATATCGTTTTAAAAAATGCTTCTTTTTTGCCTTGATTAAGCAAGATTGAAGCATTTTTTTGTTTCTAAAATAATTCTAATTGAGAGGGTTGTGGTGCGGTAGGAACCTCTGTTTTGCCCCAAAAGTTTTGAATGTTACCAAATTGCTTGTCCGTAATCCGTAAAATACTCACTTTGCCTAATGGAGGCAAAAGTTTATAAATGCGTTTTTCGTGTACGTCAGCACTTTCACTACTAGCGCAATGCCGTATGTATACTGAGTACTGCATCATATTAAATCCATCTTTAAGTAAATTGTTTCTAAATGAAGAAGCATTTTTGCGATCCTTCTGGGTATCCGTTGGTAAATCAAAAAAGACAAATAACCACATAATTCGATAACCATTTAGTTCCATAATTTAGGATATTTTATTTTCTTCCGCTCTCCAATAAAACAACCTTGTAGGGAATAGGCTGTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 12154-13044 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMHH01000041.1 Flavobacterium columnare strain CC1808 NODE_41_length_15144_cov_217.662839, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12154 36 91.7 30 ....G......................G.C...... TTTTTAATTTCTTTTGCGCGACTTTTAATT 12220 36 91.7 30 ....G......................G.C...... ATTTATTGTCGTGGTCAAAGTCTTTGATCA 12286 36 91.7 30 ....G......................G.C...... TGCTTAACTTCTTTACTTTTCTCAATTTCC 12352 36 100.0 30 .................................... CCTGGGCCATCAACATACAAAACAGTACCT 12418 36 100.0 30 .................................... CGCCATGAGCCTACGTACACGGTGTTGTGG 12484 36 100.0 30 .................................... AAATGCCTTTTCAACCACCATCTGGTCCTA 12550 36 100.0 30 .................................... TCGTCTGTTACTACTAAATACTCTTCGTTT 12616 36 100.0 30 .................................... GCCACCAAAGGGAAAATTCTTGCAATTTGA 12682 36 100.0 30 .................................... TTATATAATGATACCTTTACTAATATTGAT 12748 36 100.0 29 .................................... ATGGTTTAATTATACTTTTAAGCCAAGCA 12813 36 100.0 29 .................................... CATTTTCAAAGCCTTTTGAAAAGGAATGT 12878 36 100.0 29 .................................... TAATTTAATTGAATAAAGCCTTTAAGCTG 12943 36 94.4 30 .......T....T....................... AATCCAAATAAATGCGTTTACGTAAGCATT 13009 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 97.8 30 GTTGTGAAAGCCCTTATTTTGAAGGGTAAATACAAC # Left flank : TTTAGGAAATATATAGAAGAAGGAATTTTAAATAAAATACTTCCTAATGAAAATCAAGTCGAAATTTTAAGAGGAATAGATTTCGACGATTTAAGCTGGGCATTTGACAGTTCTGAAAGAAATGAGGAGCAAAAAGAAAAAATAAATCTATATTATCAAATTACTAATCCACAAGTTCAAAGAGGTTTAATTTTAATTATGATACGCAATAAAATAGCACACAATCAATATCCACCAAAATACATTTACGATCTCGCACAAACATTTATTCCTAAAAAAGAAAACGAATATTTTGCAAGCTATTTTAATCGTGTTTTTAAAGAAATGACAAAGAAGTTATTGGAAAGCTTAGAAAAAAAATAAACGATCCTTGTTCTTTGACAAACTGAATTAGAATTTTAAAAATGACTATTTTTGTATCTTATACAATAAAAAAAGTTTATTTTTTATTTAAAAATATTGTAGATATCCCTTGATAATTAAGGCTTCTCAACATTACT # Right flank : CAAGCAAGAGAAGTGTAGTTCTTATAGAAAGTTGTGAAAGCCCTTATTTTACTCACGTTATTTCTACTGTTTTTTATAGGAGTTCGTGAATGATTATTTGAAGGGTAAATACAACTTGGTTGAGTAGTGAATGTTAATAAACTTAGTCATCTATTTTTTGCCAATTATTTTTAGTGTATGTTTTCCAACTAAATTATTTCTAATAAAAAACCGATGACTTATATTTGAACAATATAAAATAGGCTGAATAATTTATAATTCTGAATACCTTAAACTTCTACACTTACAAATGAGAACACACTTCATAGCCATAGGCGGTGCAGCCATGCACAATTTAGCACTAGCATTACACAACAAAGGATACAAAGTAACAGGTAGCGATGACGCGATTTTTGAACCTTCTAAATCACGATTAGAAGCTAAAGGATTATTACCAGCCGAATTAGGTTGGTTTCCAGAAAGAATCACATCGGATATTGAAGCGATTATTTTAGGAATGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAAAGCCCTTATTTTGAAGGGTAAATACAAC # Alternate repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTGACTACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //