Array 1 1501087-1502014 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913033.1 Hydrogenovibrio halophilus DSM 15072 A377DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1501087 28 100.0 32 ............................ AAGGTTATTTTAATGCCGCCTTTATGATAAAC 1501147 28 100.0 32 ............................ GGTATGGCCCTGTTTATCCTCTTTTTTATCTT 1501207 28 100.0 32 ............................ TTTTGCGCGCGCGCCCACTCTTGCCCTGCATC 1501267 28 100.0 32 ............................ ATGCGCAGACGAAACCGCAAACGAAAAAAACC 1501327 28 100.0 32 ............................ ACCGGCGGCGACACCTCCACCGGCGGCGATAC 1501387 28 100.0 32 ............................ ATGCCGATGATGATCTGTACAGCCTTCATTGT 1501447 28 100.0 31 ............................ ACCAGGCCTGGTTAAAAGTGCCGACGAAATG 1501506 28 100.0 32 ............................ ATGCCGACGATGATCTGAACCGCTTTCAATGT 1501566 28 100.0 33 ............................ AATCATAGCCGTTTGGCACCTCGGCAAAAATCG 1501627 28 100.0 32 ............................ ACGACAAACACCAGCACCGCCGCAATCGTCGC 1501687 28 100.0 32 ............................ AAATCGTCCAGCCTTGCAAAGCATCACGATGA 1501747 28 96.4 32 ........C................... AAGGCGTTCACCATCCTTTTCAATTGATGATC 1501807 28 96.4 32 ........C................... AATCGGAACGAGCGCAAGACATTGACCCCGCC 1501867 28 96.4 32 ........C................... AAAGCGATATGCGAACGGCGATGCAAGAGCTT 1501927 28 96.4 32 ........C................... ATCTGCACCAACGCCGCCGAAACTTCAACGGT 1501987 28 96.4 0 ........C................... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.9 32 GTTAACCGTCACGCAGGCGGCTTAGAAA # Left flank : CCATGGCATGAACGGATTTAGAAGAAAGTCCAGGCTTCCTGAAAATGATTTCGATGAGTTTTCTTTGGTTAACGGCATGATTGACCAAGGAAACTACATTGCTTATGGGTTTGCTGCAGCCGCGCTGCACACACTTGGAATCAGTTTCGCTTTTCCGATTCTGCACGGAAAAACAAGAAGAGGTGGTCTCGTTTTTGATGTGGCAGACCTTGTCAAAGACGCAATGGTATTACCAAAGTCATTTGAGCATGGCATGGCCGGTTCGAGCAACCAAGAATTTCGTGAAGATTTGATGAGGTTTATGCACGAAAATCAAGTGATGGACCTGATGATGGATTTTGTGATGGACTCCGCTAAAGTGTTGCACTAACCCTTTTTATATTGGTTTTTTGAGATCTTTAAAAATCAGCAACTTATGACTCCATGCCTAGAAGATGGTGTTTTGCCATAAAGATATCAAAACTTCTTTTTTATCAAAGTTTTGTTTAAACTAAGGAACT # Right flank : AATATACATCTTAGTGCCGTCAGGCTTAAAGAAGTTAACTGTAATGGTCAAGTTTTTTTGGAAGCGTTCTAAGCCGCATTGGCCATTTCCTGCCGCTTCATGTTTGGCGTCAAGTAACCTATGGCGGAATTTAATCTGCGATAGTTGTAAAATCGAATGTATTGCTCAACAGCCGTCACGACAGATTGGTGGTTGATAAAACTCAGATCGTTTAAACGCTCGGTTTTCAGGTTGCGAAAGAATCGTTCCTGAACGGCATTATCCCAACAGTTGCCCCGTCGGCTCATGCTGGGGGTAATTTCGTGCCATGCCAAAGCATTGGTAAAGATTGTGGCGCTGTATTGCACGCCCTGATCTGAGTGAAACATCAGGTTTCTGGTATTAGGCTGTATTCGGGTAATGGCATCCGTCAATGCCTGTTTGGCCAGATGAGCATCTGGCGTTGTCGACAGAGCGTGACCGACAACTTCTCTGCTGCCCAGATCCATCACAGTAGCCAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGTCACGCAGGCGGCTTAGAAA # Alternate repeat : GTTAACCGCCACGCAGGCGGCTTAGAAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1503321-1503468 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913033.1 Hydrogenovibrio halophilus DSM 15072 A377DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1503321 28 89.3 32 ACA......................... ACGATGTGCTGCTGGAAGTCAAATATTTCATC 1503381 28 100.0 32 ............................ TGACCTTCCGAGTCGCAAAAGCGTTCCAGAAT 1503441 28 92.9 0 .....................A.....C | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.1 32 GTTAACCGCCACGCAGGCGGCTTAGAAA # Left flank : CGGTTGGCGGGTTTCGTTTGCATCTGGTAATAGTAGGTCGAGATCGCCACGTCAAACAGCCTGCACAGCTGGTGAGTGGTCAGTTTTGGGTCTGCCTTTTTCATCTGCCCAATCACTGTAATGCTGGATTGTCGCGAATGAAAAAGGCGGTGGCCTTTTTTAACAGGGCATTGTCCCGCTTGGCGTCAGCCAGTTGCTGTTCCAACTCCTGAATGCGTCGATGCTCTTCGGTCAGCGCGGTTTTGCCTTCAGGGATCTCGCCGTTAAGCTCCTGACGGTATTGTCGTTTCCAGCGAGTCACCGCCGAGGCACAGGCACCGGACAATTCCATGATCTGTTTGTTGGTATAACCATCCTCGATCATGAGCTTGGCATATTCCAGTTTTTGTTTTGGACTGATGTTGAGTCGTCCTTTGCGTTTAGATCCTGTTTTTGACATTGTGGTCTCCTGAATAACAGTTTGGGAAGGCTATCACAACTTCCAACTTTATTAGACCATT # Right flank : CTTGAGCGCAAATGGCCTGAGGGCGGGCAATGCGTTCATTGCTACGCGGGGTAGTAAGATTGGACGTTACCTTTGTAATGCTTTTATTTTGATATGATCGTTTGTATTGTTTTTTGTCCGTATAAATTGCCATAATGTTTACCCATGATTTTTTGGGGAGATGGGTTTGATATTTGTTCACTGCGATGATTCCAGAGAGGAAGAGATAAGTTGGCTTGAAACCAAACTGGCTGAAAAAGCCATTGCGCCGAAATACATTGAAAAGGCGAAGCGTCAGTTATACATGCTTCAGAAAGGCCTTCAGGGCGAGAAGGAGGTGGAGTATATCCTCAGGCACACATTTTCAGATCGTTGGGTGTGCATCAATAATTTGAGTTTGTTTTTGGAGGATGGTCGCCAAAGTCAGATTGATCATGTGGTTATCAGTCCGTTAAAAGAAGTTTACTTGATTGAAACAAAAAACTTTACCAATGATGTAAAGGTGGACGTTGACGGGCACT # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCACGCAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //