Array 1 20959-22760 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUT010000019.1 Holdemanella biformis strain MSK.21.63 NODE_19_length_32890_cov_599.187, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20959 36 100.0 29 .................................... ATTTATCACCATTCGTGATAAACAAGAAT 21024 36 100.0 30 .................................... CGTTTATGCGGAACGTTCAAGCAGAATGAA 21090 36 100.0 30 .................................... TTTTAGAAACGTTTAAAGGAACTAGTAATC 21156 36 100.0 29 .................................... AGAATTCGAAAAAGAGTTAAATGCATTTA 21221 36 100.0 29 .................................... ATCGGTAATAAAGACAAGCAACTCCCTCG 21286 36 100.0 29 .................................... GAAATCAGACATGTATGTTAGGTTTACTC 21351 36 100.0 29 .................................... AAGTTTTGTGGGAGAAGTTATCCAGGCAC 21416 36 100.0 29 .................................... AGCGGTATCCAGTGACAGCTTTTGAAACT 21481 36 100.0 30 .................................... ATCTCAAGTGCTGCACCAGAAGCAGATAGA 21547 36 100.0 29 .................................... CGAATGAACATTACAGTTATAAAGGACAC 21612 36 100.0 29 .................................... TGTTGTACCACGTTCTCACCTCCTTCGCG 21677 36 100.0 29 .................................... GTTTGACTCACTTAAACCAGGAGGATACA 21742 36 100.0 30 .................................... CCAATCGGTTGGGATGGTATAAGAAAAGCT 21808 36 100.0 29 .................................... GAAAATGTACAACGTTATGTTGTCGGCAG 21873 36 100.0 30 .................................... GTGATTCCATCATTAATATCACTTGCTACT 21939 36 100.0 30 .................................... CCGTATTTACGGGCCGTGCTTATGTTAGTA 22005 36 100.0 29 .................................... TACAAACCCTCAAGTCGTGGAAGTTCGTA 22070 36 100.0 30 .................................... AAGCATTCAAACAAGCGCTAAGCGATGTCG 22136 36 100.0 30 .................................... AATCACCAATAGATAACGGTATATCATATT 22202 36 100.0 29 .................................... AAACAGTAAAGGTATTAACACTGTCCCTT 22267 36 100.0 30 .................................... GTGATATTGCCGTGTGGGGTTCAAACATGG 22333 36 100.0 30 .................................... AGGAAATGGAAAGAATTAGAAGGGAAATAT 22399 36 100.0 29 .................................... TCGTTATCCTTCGTGGTTTCTGCAACACG 22464 36 100.0 29 .................................... AGAAATTGACGCAATGAATAACACTTTTT 22529 36 100.0 29 .................................... TCGTTATCCTTCGTGGTTTCTGCAACACG 22594 36 100.0 30 .................................... CATATATTCCACCATCATATGATGAATACA 22660 36 100.0 29 .................................... CTTTGCTTTCCTGAAGTACATATTGAGAC 22725 36 97.2 0 ...............T.................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 29 GTTCTTGAGGATTGAATTTATTTGTATTATTTGAAC # Left flank : CTGATTTTAATATTTCTAAGTTTATATCAATGCTAGATATAAATGTAGATGATATTTCAGCAGATAAACAATACATTATGGTTTACAATTTGTTATTGTTTGTGAGTAGAAATCAATATAATGTTGTATATATTGATTTTCCAATTACACAAACCGTATTAAAATGGATGAAATCGTTTGATCAAGATAATATGATGTTTCTCTTGAATAATGATTATATGGTATGTGATTCTTATCAAGAATTAGAAAAATTTGCCATGTTGATTGTTTCTAATAAAGATTACATTGAAAAATATGAATATGATTTAAACCAATTTAATAACATTTCCTATATACAAAATCCTTATACTATGCTTCATAAGCAACAACAAACAGAAAAAAATATTCGATTAATGGAACAATTTGAAGATAAAAATACAACTTTTTATCTAACTTTTAATGATACATATACTCAAGATATACTGTAAATAAAGCACAATTATGCTATAATAAGGCCGACA # Right flank : CTTCCTTTTGAATTAACTGGATACTTAGTGCGTTTTTGAGGATTAGACAATAAAAAGAAATATTGCTACTTCTTAGGTGTTACATTAACTACCACATACTCACATATACCCTCTGTTCTTATTGGAAAACCCCAGCCAACAAGGCCTGAACTTATGATTTTTTTAGTGCTTGAATGTTTCTTTGCCGTAATTACCCGCAAAATCGGGCTGTAAATGGTAAGAATAAGAGAGTGGAAACATTTGTCCGTTATGGGTATGTCCACTGAGTTGAAGGTCAACGTTGTTTTTAATGTTTTCTTTTGTTCCTTGTGGTTGATGGTCTAGGACGATGTTGTAGGTTTTGTTTGTAAGGTTGTAGTCCTTTGTTTTCTTTCGGTTTTTGTTTGTGTAGTCTTTTCTTTCAATAAGGATAATGTTATTTAAATGTACTTCTTGATCATTTAGAATGGTAATGTTGTTTTTTATGATTTCTTGATTAAGTTTATTTCTTGTGAATTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTGAGGATTGAATTTATTTGTATTATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //