Array 1 145087-145706 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001776.1 Synechococcus sp. PCC 7336 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 145087 35 88.9 42 C..........................T....-..T TACGTTTGGGTTTAATTATCCGCCAGACTTAAAGGTGATCAT AG,G [145106,145110] 145167 36 97.2 35 .G.................................. CTCAAGAACGTATCCTCGAACGGGTATCTGGTTAC 145238 36 100.0 37 .................................... TTGAGGTCGACGCACGTGCCAACGGCAATTTCGGGAG 145311 36 100.0 37 .................................... ATGATGTGGCGTTCATTCAAGTTGTCATCCGGTTCAA 145384 36 100.0 36 .................................... TTATGGATGTGCAGCCACAGCTACAGCACTCGAAGT 145456 36 100.0 36 .................................... ACTGGTTACCAATCCTTTAGTTACAGGAGGATTGGT 145528 36 100.0 36 .................................... GTCGATCGACAATTCCGGTACACTAGAGGGAACGGG 145600 36 100.0 35 .................................... TTGAAAAAATTCTACGACGTCAATCTCCCTCTGGC 145671 36 91.7 0 .................................TCC | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 97.5 37 GTTTCCATCCCCTTGCGGGGAAAAGGTGGAAAGCAG # Left flank : GCTTGAATCTTGCAAGGTGGCAGCGGGCAAGCAGGGTATGGTGACGGGTTTTGTGGGGGCGGTGACGTTTGGGTTGTCGGCAGAAGCACGTAAAAGGGAAGAGTTTGTGCGGATGTTTGGGGCGTTGTGCCAGTACGCGCCCTATTGCGGGACGGGACATAAGACGGCGTTTGGTTTGGGGCAAACTCGCTCGGGCTGGCTGGCAATGGAGGGGGAAAGTTCTGTCATTGATGCTAACGAGCTGTTGGCGAAGCGGATTGAAGAGCTGCAAGGGGAGTTTTTTGCCCAGAGACAGAGGCAAGGGGGGGAGCGGGCAGCGCAGACGGCGCAGCTATGGGCGACGATTTTGGCGCGGCGGGAGACTGGGGAGTCTTTAGGCGCGATCGCGGAGGATTTGGACATGCTTTACGAGACAGTAAAGACTTACGTAAAGTTGGCGCGGCGAGCGTTGAGGGAGAAGGCAGAACAGAGTAATAGTTAGAGGGAATCGGCATCATGCG # Right flank : CTTGCGGGTAAGCATTCCAGAGGTCAAATCGACGCAGGGCATTTTGAAGGCATCCAAAAAACCCCAAAAATCCATTTACATCGAAACAGGAAACATCAAAAGCCTTGCAGTACAAGGCATCGACACAAGTCTAGGAAATATTAGAATGTCAAGGTTCAGAGAGAGCATCAAAGTACCCTCACGTGCCCACACTATCCCCAACAACCAACCAAATCTCAACACATTTACAAACATATATACCGCCCCTACCCCCATCTCCTTAACTGCGCGTGGAAACTTTACCCCTCAAAACGCTCGTATAGGTCTCCCCAGCTCCACCAGGCCCCTGACGATCGGGAAACAGCGCGCCCACTTATAAAAAGCTGTCAGGATTGGGTCACTTTTGACGCAGGCCAGCCATAAGAACACAGTCGCATGACCATTTGCGATCACCTGAAAGCCCTGAGGAAACGAGGGTAGTCCTCAATCTACTATCTCGCCCAGTGTAAGCCAGTGCCCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCTTGCGGGGAAAAGGTGGAAAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 695155-700274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001776.1 Synechococcus sp. PCC 7336 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 695155 36 100.0 37 .................................... ACGATAAACACTGCACGGGCTTCTGCAGGCCAATCAG 695228 36 100.0 35 .................................... ATCCAAAAAGTTGGCTAGTTTTTCAGCCAAACCCA 695299 36 100.0 36 .................................... TACTAGAGTATTACCCTAGCCAAAGTAAACTATCTA 695371 36 100.0 34 .................................... ATCGACGACGATCGTGCTCAACTTGCCCTAATCG 695441 36 100.0 39 .................................... ATAACCCCAAAACTCCCTCCTGCCAAGTTTTCCCACTGT 695516 36 100.0 35 .................................... GAATTCAGGCGATTTGACGGTGGAGTATCTATCCG 695587 36 100.0 36 .................................... TCTTCATCCAGTCGTCCTGGTAACTAGGCAGTACTT 695659 36 100.0 34 .................................... GCTATAGATCGATCGACCGACGCTAAGTGAAAAT 695729 36 100.0 36 .................................... ATGGAAGAAAATTTCAAGCAAAAAACATATAATGAC 695801 36 100.0 34 .................................... ACACTCTTTGGGGCCGAGAGTACAAGTACGCCAA 695871 36 100.0 36 .................................... ATGGCTCCTGCAACTGCTGCCTTCAGTGTCTGCTTC 695943 36 100.0 37 .................................... CTGGGCAAGAATCAGAAGCAGAATCTACAGGGAATAG 696016 36 100.0 35 .................................... AGCACTTACGGGGAAGATGCCGGCTCCAGGCGAAT 696087 36 100.0 37 .................................... TTCCCAACGGTATCGTGGATGTTGGTCTTAACCATAT 696160 36 100.0 36 .................................... CCTTGCCGCTGTATCGGCAGGAGACAATCTTACAAC 696232 36 100.0 36 .................................... CGTCCGGTCAGACCCAGGATCCGGGCGCTGTGCGTG 696304 36 100.0 36 .................................... GAAGATCCTACTGAGAGAGAGGGGTTTACTCTCTTA 696376 36 100.0 36 .................................... CTCAATGCAAATTTAGCTAATGGCTGTTGTAGACCT 696448 36 100.0 36 .................................... CATAATAATCCGCATACTGTACAACGTTTGGAACGT 696520 36 100.0 36 .................................... AAAATATAAATAATCCAGATACACACTTTTACGATA 696592 36 100.0 37 .................................... GAGCTCGGGGTTTTCGTCACGAGTCTAATCTAGGAGA 696665 36 100.0 36 .................................... TAAGCAAAGAGAGACAAACAAATGACCACCACCTTC 696737 36 100.0 34 .................................... ACAATTCGGATCTTGCGTCGTTACCTAGTTGAGC 696807 36 100.0 34 .................................... GAGTACCCGGAACTCCGACAGACCGTCAAGCTTG 696877 36 100.0 36 .................................... AGGGAGCATACCCACTGGGATCTGCTTGTGGGCAAT 696949 36 100.0 35 .................................... ACAAGCCCTTTAGAGAGAACCACGAAGTCCTGCCA 697020 36 100.0 34 .................................... GTGTGTCGGTCAGACTGGGAGCATCTTTAGTCGG 697090 36 100.0 36 .................................... CGTCGACAGTGTCCTGAGTATTCGAGAAGAAAGTAG 697162 36 100.0 36 .................................... TTCTCAGCGTCATCGCAAATCGGGACTTCGGAGATC 697234 36 100.0 38 .................................... TCGCTGACAGCCAAGGTCGATTCTCTCGTTTCTTTACC 697308 36 100.0 36 .................................... TCCGGGTATCAATCCTTTAGTTACAGAAAGATTGAC 697380 36 100.0 36 .................................... GCGGAATCAGCTTAAGGATAACAGGGCAGGAAGTTC 697452 36 100.0 38 .................................... TTAATATTTCTACTTGTTTAACTGACGATTTGAAAGAA 697526 36 100.0 36 .................................... TGTTCCGCACATCCAGAGATTTTTGCTGGTTGGAGT 697598 36 100.0 34 .................................... CCAGCTACCACAGCTACAAGATAATTGTGGTAGC 697668 36 100.0 38 .................................... GCGGCGATCTGCGACACAAATAGCACGCTCCCTTTTGG 697742 36 100.0 37 .................................... GCCGTCCCCGAGGACTACCACGCCTTGTTGCTCCCAC 697815 36 100.0 36 .................................... GGGACTTGGATAAGCTGATCCTGACCATCGTCGACT 697887 36 100.0 34 .................................... TCGAACAGTTAAAGACACAGCTAGGGGTTAGTAA 697957 36 100.0 36 .................................... GGGTAGACAGTGTCTTCTTCTCTTTCACTGCCAATC 698029 36 100.0 34 .................................... CTAATTTTAAGGTTCGAGCCGCCAGCGTTATCGC 698099 36 100.0 34 .................................... GATGCTATCTGGCTTGTTTTCCATAGAAACTATT 698169 36 100.0 34 .................................... TCGAAAACAAAGGAAAAAAGTCATGACCGCTCTA 698239 36 100.0 34 .................................... GATCAATATTGAGTGCCCGTGGGCCGAGGAGCAC 698309 36 100.0 33 .................................... GAGATAGTGCAGATAATTGAAAATTTTTGAGAG 698378 36 100.0 37 .................................... ATCAGTCTATTGCCCCGATCTTGCAGGGGGAAGAAGA 698451 36 100.0 35 .................................... GCGATCGCCTAACAACCGATTGCGGAGGCGGTACG 698522 36 100.0 35 .................................... AGGCACAGGGGCTAACGGCTTTTCAAAGCTAAATC 698593 36 100.0 34 .................................... CTTTGAACCCCTAAATGCTTTGTCCATGCTTTTG 698663 36 100.0 35 .................................... ACAGATCTCTCTCATAAGGAAGAAAGCAGAGAGAG 698734 36 100.0 37 .................................... TCGTCGATTGTGGCGGTGGGGACGACACACTGTAGCC 698807 36 100.0 39 .................................... TCTTCCTTCAGCCCCGCATCGGTATGCCCAAGCCTCCCA 698882 36 100.0 34 .................................... CATGCCAGAGTTAGTGAGGCCCTTGACGTAGACT 698952 36 100.0 34 .................................... CAGGTACCAAGCTGCAAGAGCAGTTGGGGGCTAC 699022 36 97.2 34 ..................................C. AGAAAGAAAAAGCAGCTTGGAAGGAAATAATGGC 699092 36 100.0 36 .................................... TACCCTCGCACTCACTGAGCCTGTCATGCACCTCCC 699164 36 100.0 37 .................................... TCTCTCCTCCTGTAGTATCAATATTAAATATTTAAAG 699237 36 100.0 35 .................................... GGGTGGTAGAAGAGCCGAAGAATTTAAGCCCAGAG 699308 36 100.0 35 .................................... TTTGAAATATACAAGATCGGCACTTGAATCTTCCA 699379 36 100.0 34 .................................... TCCAATAATCTTTCGGGGTTTGGCGAATCCGTTC 699449 36 100.0 37 .................................... CTAGGATAAGCGGAGTGGATGAGGGCTAGGATTGTCT 699522 36 100.0 37 .................................... AGACCTGCAGTGCGATCTCCACCACCCAGCAAGCCAA 699595 36 100.0 38 .................................... AAACGAAGACGCAACCAGTGACCAAACAAATGGTTTGG 699669 36 100.0 34 .................................... GAATCGAGCGAGAAGGATCTCAGGTCAACCAGCC 699739 36 97.2 34 ....................A............... CACCACACCCCAGTGGAAGGATGCGCGGCATAAT 699809 36 100.0 34 .................................... ATATCTGAAAGTAATGTTGCTGGCACGACTCACC 699879 36 100.0 36 .................................... CCTACAAGCGATCGCAGTCCGCGTGGCTGACTTGTT 699951 36 100.0 37 .................................... ACTGAGAAAACTGCAGAATAATTTTACCTTTCTTAGT 700024 36 100.0 35 .................................... TCATCGGCACGGATGGTGGGCTCGGGCCACTCCAA 700095 36 100.0 35 .................................... GAGAACTAGGTCAAAGAGTCGTTATTAGGCAATTT 700166 36 100.0 34 .................................... ATTGATTTATAAGCGGCAGAGTTAGCAATGACTG 700236 36 83.3 0 ..................T....C..GA......TT | TC,A [700258,700263] ========== ====== ====== ====== ==================================== ======================================= ================== 72 36 99.7 36 GTGCCCCAACCATTGATGCCGTAAGGCGTTGAGCAC # Left flank : ATTCGCGATCCAAAGCGATGGCGCAAGGTGTTTAAGTTGTTGAAGGGGTATGGGGAGAGTTTACAGTTATCGATTTTTCGCTGTCGCTTGAATTTGCGAGAGCGGGAACGGTTGAGATGGGAGTTGGAGGAGATTATGGCAGCGGAGGATAGTTTGTTGGTGGTGGGGTTGTGCAATCGTTGTGTGGAGAGGATTCAGGTGTGTAATTGTCCTGAGGCTTGGCCTGTGGAGGAGCAGGGGTTCCAGATTTTTTGATGCATGGATCTGCGCGCGTTCGTTTTTTGGGGGGAGGAATTGCTCCGATCGTTTGACGGGCTAGGGGATTGAGGGGGCGAGCGGGGGTTGAGGTGCTTGTAAGGGCTAAAAACGTTGCTCTGTCTGAGGTTCAATTGCTGATGAACGGTTGTCTGTCAGCATTTTTTGATAGTTTTGCTAAACTATCTGAGGTGCTTGCCAAAGTCACTCAGAGGCTTTGTCTGGTCTGGGCTTTGGCGATCGCC # Right flank : TGGGAGCGAGCAGGGTTTGATAGATAGAATGGTTCCATGATTATTTGGAAAGCTAGGTGTAATTCATGACGTCCTAGCTTTTTTTCTGCCTCTTGGCAATCCCCTAACCCTTGCTAGACCTGCCTCCTGAGCTGTAGTGTCACCCCGCCAGGTGTGGCACTCATTTGCAAGCGATCGCCATTTGACTTTTGCCGCAGTAGGGCAAATTCAAACACATCGGTCTCAATGCTGGTGTCTGAGGCTTGGGAATGGTATCCCGATTTCGCAATCGTGGGTTAGAACCTCTCGACCCGGGCCTGGAAAGAGGCAAGGGAAATTTCACACCGCGATCGCCGATCGCGGATCGTAGGACTGCACCTGCTTGAGTTGCTCGTACAACTCTCGCTCCCGTTCTGTGATGTTGCTGGGAACGTTCACCTGAATCACCACAAACTGATCGCCGCGATCGCCCTTCCCCTTCGGAAACCCCTTACCGCCCAAGCGCAGCCTCTGCCCCGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCCCAACCATTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1523634-1523093 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001776.1 Synechococcus sp. PCC 7336 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1523633 36 100.0 36 .................................... TGATTTACGCTGCTGAGTCGAGGTCAACTCTGGCAG 1523561 36 100.0 35 .................................... TCGTCGATCGGATTTTCAAGCAAGTACCAGTACTG 1523490 36 100.0 41 .................................... ATTCGACTTCACCTACTAGCTGAGCAGTTGCTTCGCTAAGC 1523413 36 100.0 35 .................................... CCGGGAGGCAGCAACCCCCAAGGGGGGATGACGAT 1523342 36 100.0 36 .................................... TGTTTCGAGGGAACGAACAAAAGGCTGGTCGGACTC 1523270 36 100.0 34 .................................... GCGATCAGTACCTGTTTGTCGCCAGCCTCAACGG 1523200 36 100.0 36 .................................... TTGCTGTACCAGGTCGAGGTGACCAGTCTGGCCTAT 1523128 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 100.0 36 CTTTCCCACACCTTGGGAAATCACCTGATTGGAAAC # Left flank : CTTTGAGTGCCAAGCGGGCGGCTTGGCTGCTGTTGACACGGCCTGAAAACCTTACGCCTGAGGAGAAAACCCTGCTGGAAAAACTGGGCCAGCAGCCAAAGTTATCGGGGGCGATCGCTCTGGCTCAGGGGTTCATCAAACTGGTGCGCGAGCGACTGCCTGGGGAATTCGACGATTGGCTGGAGACAGCTGTGAGCAGCTCAATCAAGGCATTACGGAGTTTTGCCAAGGGTCTTCAAGAAGATTACGATGCGGTGAAAGCAGCTCTCACACTCGAGGTGAGCAATGGGCCAGTGGAGGGTCAAAACAACCGACTAAAAATGCTGAAACGGCAGATGTTTGGAAGGGCTGGGCTCGAGCTATTGGCCAAGCGCCTCATCCTAATCAGTTGATTCTTATACGAAATAAGCGCCTCATTTAGGACAGATTTAACGATCACCAAAAGCGGACAAGACCCCGAAGTCGGATGAATATGCAGTGCAGACTAAAGCGTCGCAGAG # Right flank : CAACAGGAAATGCTCCTTTTGCGCTCAAAGTGATTTCGCGGGAGTGGCTATTCGCTTTCTCGATGACGGTATTAGTACAGAAGGCACTATGGGCACAATGGTTGTTACCATTCTCTCTGCTGTGGCACAGGCAGAGCGACTACGGATCCTGGAAAGAACTAACGAGGGACGCATTGAAGCTAAAGCCAAAGGAGTAAAATTTGGTCGCAAACGCACTATTGATAGAAAAAAATTGCGGCAATTGCATGAGCAAGGTGTTGGAGCAACAGACATTGCCAGACAAATGGGTATTGGCAGGTCTACGGTCTACAAATTGCTCAGGTAGAGCAAAGATGTCGTAAAGTTTTCTATCGCAACTATCTGTTCAATAATCAGATTCGTCACTTTTGGGGGTTCTTCTGCAAACCCCGTTTTAGGCTACCTTCCCAACTTAACAAGAAAGAAATATGTCATGCCTTTCTTGATATGCACCAGTAGGCTTATATCACAAGTCAGCCAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCACACCTTGGGAAATCACCTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 1532341-1525521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001776.1 Synechococcus sp. PCC 7336 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1532340 36 100.0 38 .................................... TTGACTTAAAGACAGGCGATCGCCATTATTGTTGCTCC 1532266 36 100.0 36 .................................... CGCGTTTGGATGGCTCACTGATTCAGCAATCATATT 1532194 36 100.0 35 .................................... CGAAACAACCCTCTTGGATATCCGCAGCGCAACTC 1532123 36 100.0 34 .................................... CTGTCTGGGGTGAACCAGGCCATAATCCCGCCAC 1532053 36 100.0 35 .................................... CGTTTGCAGCGCAAACGAGTTGCTTTCTCCCGCTA 1531982 36 100.0 46 .................................... CCTCTGCCGCAGTGCGCGTTGGCGTTGGCGATCGACCGATCGCCAA 1531900 36 100.0 36 .................................... CTGTTAAAGACACAATGAAGCCACGGCATATACAAC 1531828 36 100.0 34 .................................... TGGGAATTGTGGGCGATCGCGATTGCTTTAAAGA 1531758 36 100.0 35 .................................... GTGGGAAGAAGTTCTTGGAAGGTGGTGAAGTCGTT 1531687 36 100.0 37 .................................... ATCGGCACCGCGACCAATGACAGCAGCCTGAATCGTT 1531614 36 100.0 35 .................................... CTGACAATGACCGGAGTGATGGCGCTGTGGAAATG 1531543 36 100.0 42 .................................... GCACGGGTCTGTATGGAATTGGTCAAAGATCCCCTCGATCGC 1531465 36 100.0 35 .................................... CCCAAGGAAGTGAATCTATAAAACGAGTGGAACTA 1531394 36 100.0 35 .................................... CTTCCCAACCGAAGACAGCCCTACCCAATGGGTAG 1531323 36 100.0 35 .................................... CAGTAAGAGTGGATCGACTTTCCCCCTGTAGACAA 1531252 36 100.0 36 .................................... CGTTCTCAGCGGCAAAACGAATACCTGCAGCAACTC 1531180 36 100.0 36 .................................... GAGAATATAACTAAAGTTTTGTTATTAGCTGTACAA 1531108 36 100.0 37 .................................... GAGATGAAGGCAAGGTAGGGCATAAAGCACTTTACAA 1531035 36 100.0 35 .................................... TTGTCTCCTACTCTTGTTAGTCTACTCATTTAATC 1530964 36 100.0 36 .................................... ATCGCCTCGCAGACTTCGATCCTACCAAGCACCTCG 1530892 36 100.0 37 .................................... TGCGAGGGGCAAGCGGATATAGATCTGATTTCGTATT 1530819 36 100.0 36 .................................... CAGAGATCGTCGATTGCGGATAACCCCTTTGAGATC 1530747 36 100.0 35 .................................... TCTTTCGATCTGGGGTCTTCGACCTGGGATACTTC 1530676 36 100.0 38 .................................... TCGAGTGCGGCTTGCTGATGGGGCTTTTCCTCAAAGTA 1530602 36 100.0 37 .................................... CATATACTTCACAACATTACGCGCATCATTTAGACTA 1530529 36 100.0 38 .................................... CAAAGTGATTGTAGTCGCGCAAACATACCGGAATAACA 1530455 36 100.0 37 .................................... ATTTGGCGATCGCAAAGTACCAGGCGTTTGTCGTTTG 1530382 36 100.0 38 .................................... ATTTTAGCGAGGTAGATCTCGCGCGAATTTCTGCGATC 1530308 36 100.0 36 .................................... GCGACTCGCAGTAATTCGCCTCAGCAATAAAAGTTT 1530236 36 100.0 35 .................................... CGGACGGCCATCTAAGCGATCGCCGGGCTGGACCA 1530165 36 100.0 35 .................................... TACGCAGCCACTACTGGCGATCGAACGCCAGCAGA 1530094 36 100.0 37 .................................... GTTTATCAAACTGAACTTGGCCTTTCCAACTTCCTAC 1530021 36 100.0 38 .................................... CGCTCATTTGAGTGAGAGAATCGAGAGCAATCGAGTTG 1529947 36 100.0 35 .................................... CTGCTTACAAAGATTGCTGTCAAATCCCTTAGCCC 1529876 36 100.0 36 .................................... CCGATAAGCCCCGCTCCCTTTCCCGAGTGGGAAAAA 1529804 36 100.0 37 .................................... CTGTAAGGCGTACCCTGTCTCTTTGTCAGTATATCGA 1529731 36 100.0 37 .................................... TTACGAAGGGCTGTGGGTAAACATTCCACCTCACATA 1529658 36 100.0 39 .................................... TTGGGGTCGCCATCGAAGTCCACTAACCAAGCTAGGAAT 1529583 36 100.0 35 .................................... TTTTTCAACGCATTAAGATGCAAACACCGTTCTAG 1529512 36 100.0 35 .................................... TTCGTTGGCGGGTACTGGTCCGAGGGCTCTAACGC 1529441 36 100.0 37 .................................... TTGTCAGGGAGCAGGTCAATAACTCGGTTGGCTTCTC 1529368 36 100.0 35 .................................... AATAGTGCGCTGCGTTGCCTTCAGCGCAAATACTG 1529297 36 100.0 35 .................................... TTGTCAATATGCTGCTTGTAGAGCGCCCTTGCTTC 1529226 36 100.0 34 .................................... ACTTACAAGGGGCTTTTCAATCCTGATTCTGCGA 1529156 36 100.0 35 .................................... CTCAAAATCTGAGGCCGTCTCTCGCGCAGCCGAAA 1529085 36 100.0 33 .................................... CGACTTTTAATTGCGCAAACCTCAGCGTATCCT 1529016 36 100.0 37 .................................... TTTGACGAATAACCTGTCTAAGATTTGAGTGAATCGC 1528943 36 100.0 36 .................................... TAGCGAGCAAGCATATCCCAAAGACTGGCCTATTGT 1528871 36 100.0 37 .................................... TTAGAGTAAAGCGGCACGTTTTTGAGCTGACTTACGA 1528798 36 100.0 35 .................................... TGGATAAAGAGTAACTAATTGAAGTTCGTTCTTAA 1528727 36 100.0 35 .................................... CTTCTCTCGGTAGTTGCTGGCGACCTCAAGAACGT 1528656 36 100.0 37 .................................... GCTTCCTGTCTGGTGGGGGACCAAGTCATGTCGAGTT 1528583 36 100.0 36 .................................... CCGCCTATGGCCCCGAAGGGGTAGCCCTGGTTCAAG 1528511 36 100.0 35 .................................... GTGGCAGACGCAACCGAGGCAGACAGGCAGAACAG 1528440 36 100.0 37 .................................... ACGTGTCCAAAGGTTTCTAGTGCGTCGGCTAGTCTAG 1528367 36 100.0 39 .................................... CAGGTGGTTCAGGTTTGCCGAGTTGACCTCGATTTCGAT 1528292 36 100.0 36 .................................... GCCGTCCGGGATGTAGCCAACTTCTTCGCCGGCCCG 1528220 36 100.0 37 .................................... GTTACAAGATAATTGTGGTAGCCCAGACCTACCGGAA 1528147 36 100.0 36 .................................... GGTAAAGGCTGATCCCACTCGGAACGCACCACCAAT 1528075 36 100.0 35 .................................... GTCTGTGAGGCGATCATCCTAGCGAAACTCGGGAC 1528004 36 100.0 44 .................................... TGGGAAAGAATCTAGTGGTCGAGCCATATCCAGCCCTGACAGCT 1527924 36 100.0 36 .................................... TGAATAGCTGTGACACTAGGACACTCCAGTAATCGA 1527852 36 100.0 34 .................................... TGATTGAGGGAGGTCGAGTTGACTTCGATTTCAA 1527782 36 100.0 35 .................................... CATCGAATGCTTCCAAAGCTAAACGGTCAATGCTA 1527711 36 100.0 37 .................................... CAGACCCCTGGATGGCCGATAGAGCCCGTTGATCGCC 1527638 36 100.0 35 .................................... CGTAGGGTATCTGTCGGGCAATCTCCCAGAGAACA 1527567 36 100.0 35 .................................... TCTTTTGATAATAGGTCGAAGATTATCTTTTTCTA 1527496 36 100.0 35 .................................... TAATTTAGGACCAGCCCAACATAAATCACATACCT 1527425 36 100.0 36 .................................... CTGTTGAATTGTTGAATGCATTTATCGACTTTGATC 1527353 36 100.0 36 .................................... GTAATCATATGATTGGTGAGCGCGCCGCGTAATTCC 1527281 36 100.0 36 .................................... CTGAAGTTTATCAATCCTTACATAAACACATAGATA 1527209 36 100.0 37 .................................... GTGATTAGTGTGTAAAGTTGGATGACCTGCATTTATA 1527136 36 100.0 36 .................................... TATCACCCTGAATTGCTGTCCAGAATGCTAGCTCGA 1527064 36 100.0 36 .................................... AAGTTTTTGTGATTGGAATCACGGGAATAGAACCCC 1526992 36 100.0 39 .................................... CGATCGAGCGGAACTTTGACAACATCCTGGGAGGGAATC 1526917 36 100.0 36 .................................... CTGCCAAGATTGGTGAGCTCACGGGGCTTGTGGAGA 1526845 36 100.0 40 .................................... ACGTTGAATACCATTTGTCTATTCTGCATATTCAACTTCT 1526769 36 100.0 36 .................................... GAGGTCGATATCAGTTTTTAAGTACTACTTGGGATG 1526697 36 100.0 34 .................................... GATTATCTATATCTTTAGAAGGTCTAGAACCTAC 1526627 36 100.0 35 .................................... GAATCTAATTCTTCGGCACTCAAACTAAGTCCCCA 1526556 36 100.0 37 .................................... TTGATCAGTCGATTCAGAGTGCTTGAATTGACCTCGA 1526483 36 100.0 35 .................................... TTTGCGCTCCCAAAAGTCCACGCCAAATTTGTCTC 1526412 36 100.0 35 .................................... AATCTTCACCTCGCGCCCCGAGCCCGAGTAGATCA 1526341 36 100.0 35 .................................... TTTGAAAGGGATTGCATTTGCCTGCTGAGTCTCGA 1526270 36 100.0 35 .................................... GAGTAAATTATGCTACTGTCGATGCGGTTTATGGT 1526199 36 100.0 35 .................................... AAGCCGACTGTTGCTTTCTGACCGTTCGGATACTC 1526128 36 100.0 35 .................................... AATTTAATCCTCTCGCACCGGGGACTTTTGGAGAT 1526057 36 100.0 35 .................................... GATACATGCGAGCCATCCGGTGCTGCGAAGGTCAA 1525986 36 100.0 35 .................................... GGAGCATTGTTTACTCCAGCAGAGATTACCGATCA 1525915 36 100.0 37 .................................... CAGTCTAGAAGTACCGGGCTTGTTCAGTACCGAGATT 1525842 36 100.0 36 .................................... GATCGAAAACCGATTGAGTGATTAAGATTCTCACTT 1525770 36 100.0 36 .................................... GAGCCATACTGATCGGCACACAGCCTAGCTACTTTT 1525698 36 100.0 35 .................................... AAGTAAAACAGGGATTGGTCGTTGAGCAGGATTGG 1525627 36 100.0 35 .................................... ACGACATGCCGGTACGGGGACAGGTATCCAGCTTC 1525556 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 95 36 100.0 36 CTTTCCCACACCTTGGGAAATCACCTGATTGGAAAC # Left flank : CCCCTAACTACCAGATTCACCCTTATGGCAGGCTGCTGGCGATCGCTGGAAACTGGACCGCTTTAGCCTCGCACTCGCAGCTATATGAGATTACGCTGGTTTGGGTTTCCAATCCTGAAGGTAGATTCCAGGTGGTGACGGTGTTTGGGGCCAATGCCAGTCCGAGGAAGGAGTTTATTTCGCTGTTGAAGTCACGGGAGGGGGCACGCATCCATCAGGTTTTTCCCCTCGGGCGATCGTGAGTGTTTCGATTAGCGCCGGTCCGCAGGGTTATATATGATGGTGAAACAGCGTGCTTTTGTTGGTTTTGCAAGCATCTACCCAGATCGCTGAAACCCGCATTGTTTCGTTGCCTTGCTTACATTTGCTGCTGTGACGGGGTTTGAGGCTATTTTGAGCTGCGTCTATTGAGGCTATTCTCAATTGCTTATCTTGCTTTTTGGACATCCTTGCAAACTTGCTTGGGAGCCCTTGCAGGGTAAGGCTTTCAGAGCCCGCCA # Right flank : AAGATCTCCGGGGGTGCATGCAAAATAACGCCAACTTCGGGGTCTTGTCCGCTTTTGGTGATGCAGAGAAGGTATAGGAGAATACCAGGTGCAAACCCTCACTCTGCCAAGCCCGTGGAACTTTTACAGCATCTCCTGCCCAGCCAAACGGATGTGAGCTTGAACAGTTGGAGTATCGATCCGGCCAACCAACAGCTCGTTGTTAACCTCTGCTCGACTCAAACGGTGGCCTGTTGCCCGCTGTGTCATCGCTCCACCGATCGCATCCATAGCCACTATGAGAGAACGTTGAGGGATTTGCCATTGGTTCAATTCACGCTGACGATATTGCTCCAAGTCTGTAAGTTCTTCTGCCTCAACGAGCGTTGCCCTCGGCGTATCTTTACGGAGCGTCTGCCCGAGGTTGTCGCGCCTTGGGCCAGACGCACGACTCGCTACACGGCTCAACTGGAAGCGATGGGCTTAGCCCTCGGTGGTTCGGCAGCAGCCCGCTTGAGCCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCCACACCTTGGGAAATCACCTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 1544131-1543885 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001776.1 Synechococcus sp. PCC 7336 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1544130 35 100.0 34 ................................... CCGCCAAAGCGGATCCTTCGTCAGAGATGATGTC 1544061 35 100.0 35 ................................... TATAGTATTTAATAAAATTAAGATCCAAAAAATAG 1543991 35 100.0 37 ................................... AGGTTAGACCAAAGGGTTTCAACATTGCTGTTGGAAT 1543919 35 94.3 0 .............................A..G.. | ========== ====== ====== ====== =================================== ===================================== ================== 4 35 98.6 36 CTTCCCAGTCCTTGGGAAATCACCTGATTGGAAAC # Left flank : TTGCCTCGCAAGGTGGTGGAGAAAGCGCGGCAGGTCATTGCCGATCTTGGCAATGGGGTGAGTTTGGCGGTGTTGCGGGGGAAGCGGCTGCGGGGCGATCGGACGTTGGTGCGGGTGCCGGTGGGGTATCGCTATCGGTTGTTGTGTCGTTGGGGGGATGACGGGATTGTGCCGTTGAGGGTGATGTCTCACGAGGCTTACAATCGAGTGGCTCGGCATCCAATGTAGGCTTAGTCGATGGGAATGCTGGTTAAAATTCTATACCGATAGTTCGAGATGAAGACTAAGAAGGTTGCTGAGCCGATCCGTGCGGGGGGTACGCTCGTCGGCTGAAACCCGCATTCTCTCGTTGAACCCCCCGCGTGCTGCTCTGGGCAAGGGTTTCAGGTGTTTTTAAAGGCTGCTTAATGACGCTATTCTCAATTAGTTTTACAAATTCTTGTACCCCCCGCATTTGGGGGTCTACAATTCAGTCTAGGAGCTGATTCTAGGAACCGGCT # Right flank : TAAAGAGACAAGAACAATAATTCTGACTTGAAGGAAATAACTCTGTCTTCTAAACCAAGTCTAGTCAGAAACCTGTAGTTTTAATGAGGCACCTTTTAGTCTCCCTCACTAACGCTGTTAAGCACTGCATTCGCCCCCTAAATCCCCCATTCTGGGGGACTTGGCGACAGTGCTAGCTAGGGTTTTGAGACGGGGAAGACGAACCGGCAAATCACGGTCATTAAAGCTGTAGAGCGCAGCCAACAGACTCTCACAAGTCCCCCACTGGTGGGGGATTTAGGGGGCCGAGTGCAATGTCTAAAAACTCCAGGTCTCAACATGGATGAGGTTTATAAGATTTTTCGATCGCCTAAATATCTTAATTTAAATTGAATCACTCTTCCTCAAAGAGAGTATCTAAATCTCGATATCCACTCACCACCCTCAGAATTTCAATTCTGTCTTCAAATGCTCGATAAAAAATTAAGTAGTCAGCTACCGGAACACTTCTCATCCCCGGA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCCAGTCCTTGGGAAATCACCTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 6 3247885-3241792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001776.1 Synechococcus sp. PCC 7336 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3247884 37 100.0 33 ..................................... ACAAGGGCCAACGCTAACTTCAACGAGGATTTT 3247814 37 100.0 32 ..................................... CGGCGAGGTAACGCGATCGCACAACGCGCCGA 3247745 37 100.0 34 ..................................... AGAAGGGAGAACCTCAAGGCTAAGAGGTTCTCCC 3247674 37 100.0 41 ..................................... GAGCCAGGGTGAAGCCCCACACCCCGCCATCTAGGGTGCCG 3247596 37 100.0 37 ..................................... TCCCCGAAGAGTCGACTTCCGGTTTCATACCCTTCAG 3247522 37 100.0 35 ..................................... AAGCAGTTTTGCAAGCTGCGGCAAAAGACCGCTTA 3247450 37 100.0 36 ..................................... GCGGCAGCCTTCGTACCCAGCAATTTCTCAAACAGC 3247377 37 100.0 33 ..................................... GGCTCGCTTCCAGACTACGATCGGCGCAAGTAT 3247307 37 100.0 41 ..................................... CGCCAATTTTCCACTCTGCGCACAGTGCCAGCAGAGCACGA 3247229 37 100.0 35 ..................................... AGAAACCCAAGCACGTACGGCCCGTAGGCGTTCAG 3247157 37 100.0 34 ..................................... GGCTCTCAAGGGCCGAGGTGGCAAGCACGTAAGC 3247086 37 100.0 35 ..................................... CGATCGAGCGCGCAATTGGCTGGCGGCGACAACCT 3247014 37 100.0 37 ..................................... GTCGTCAGTCGGAAAATCCAATATTTTTCCTGCCCCT 3246940 37 100.0 34 ..................................... TAATTTCTTTCACGCAAACCGGCAGGGGCTTCAC 3246869 37 100.0 36 ..................................... AACCTCCCAGCCGAATTCGCTTCAAATTTTATTGGC 3246796 37 100.0 34 ..................................... CAGTACCAGAAAAATGCCAAAAAGAATCCCGACT 3246725 37 100.0 35 ..................................... CAAGAAACGATAGAGTCGATCGCCAAAAAAATAAA 3246653 37 100.0 41 ..................................... CTGGAATTTATGTTGACTAAACAACGGGCGAAGCCAGAACC 3246575 37 100.0 36 ..................................... TATTCTGTGGCTGAAATCTCCAAGCACTACGAGCTT 3246502 37 100.0 40 ..................................... CGCCAACAAAGAAAAATATTCTGCCCAAGCTGACTCGAAC 3246425 37 100.0 34 ..................................... GAGACGAGTGACGGGAACTGGCAGTACTGGTACT 3246354 37 100.0 35 ..................................... GCCGGAATAATCCTCGCGCAGCTTCCGCATGGACC 3246282 37 100.0 34 ..................................... TTTCTTAATACCCAAAGCTATTGCTTCTTGCTGG 3246211 37 100.0 35 ..................................... GAGTTAAAGTGCTAGAAGAAGAGCTTGAAATTCTG 3246139 37 100.0 37 ..................................... AGTGCTGCAGAGCTCGCAAATGGCCGCTGCCATTATT 3246065 37 100.0 35 ..................................... CACACCCGATGCGGATGGCCCTGTATTTGTCAAAA 3245993 37 100.0 38 ..................................... GTGTCCTTTTCTTGAAAGCAGTCGGTGCCTCGCGATCT 3245918 37 100.0 35 ..................................... GATTGCTTTCACGATCTCTTGAGCAAGTTTGCGCG 3245846 37 100.0 36 ..................................... GGCCGAGGACTGCAGTTTCGATATGGCCGGCGAATT 3245773 37 100.0 40 ..................................... AAAAGAGTTAGCGACTGCCGAGAAACGCACATCGCCACCA 3245696 37 100.0 39 ..................................... TTTGAGCTTACTTACCGCATGAATTTTCGTGGGTTCAAA 3245620 37 100.0 35 ..................................... CCAGCCAATCCTTTGGAGTAAAAACAGTGGCTACG 3245548 37 100.0 33 ..................................... ATTGATCCGCGCGGCCATTTCTTCTCTAATTTT 3245478 37 100.0 36 ..................................... ACGGCAGACTTCGAGGGAAAGTAGCTTCTTCTAGCG 3245405 37 100.0 35 ..................................... TACTCGCTAAAGTAGGGCCTGAGGACTACTCAGAA 3245333 37 100.0 34 ..................................... TTCCCGCAGTTGCGGTTATGACCACCTCAGTTGT 3245262 37 100.0 38 ..................................... CCCTGGAGTCCTTGGTTTCAGGTGCCCGGTGAAAACAA 3245187 37 100.0 35 ..................................... CGGACTTCTCAATTTGCTGCGGTAAGCGGGCAGCA 3245115 37 100.0 35 ..................................... TTTTGGCCACTTAATTTAAGGTCAAACGCGCAAGA 3245043 37 100.0 34 ..................................... TTTGAAACCCCGCTGGCGCGGATTGCGAGCGACA 3244972 37 100.0 35 ..................................... AAAAACACAATCGAGCAATTTTGCAAGCTGCGGCA 3244900 37 100.0 34 ..................................... GAATTGTGATACGGCAAGAGGGCAAGCGCCTTTT 3244829 37 100.0 37 ..................................... TTCGCTCGCAGACAGTAGTGAGGATACGTGATATTTC 3244755 37 100.0 36 ..................................... ATGGTTGGGCCGGTGAGGCGGGCGAAAGGGCGAAGT 3244682 37 100.0 35 ..................................... TTTTATCGACATGCGTAATCACTAAACCCCCATTG 3244610 37 100.0 35 ..................................... GCTCGATCTGGAGGGAATAGCCCATCCCATTGACT 3244538 37 100.0 39 ..................................... AAGCTGTATCGCATTGATGGGGAGCATTGGGAGCTTCTG 3244462 37 100.0 35 ..................................... GTGCCAATGTTCACCGCGAGTTTGGCGGCGGAGCT 3244390 37 100.0 36 ..................................... GGGGGGACGACCGGGGGATTACTAGCTCTACTGCCC 3244317 37 100.0 37 ..................................... GGAAAAGTTCAAGTACGAGCCTGCACTCCCCAAGATT 3244243 37 100.0 35 ..................................... AGGGCGATCGCCCCCCATCCTAGAGGCATTTTTCA 3244171 37 100.0 38 ..................................... AGTTAATGAGCTTCAGGAGATAGGGCTAGGTGTCCCGA 3244096 37 100.0 36 ..................................... CAGAATCACTTTGAGGACTTCTTTAAAAGGCTGGGA 3244023 37 100.0 34 ..................................... TCGAGTAGATCGTCATCTACATTCGCGACAATAA 3243952 37 100.0 41 ..................................... TCTTCCGGGGAGGTGGTGATAATGGCATTGCACTCCTGTAA 3243874 37 100.0 39 ..................................... TTCTTGCCCTCTCCACCACCCTTTTTTTCCCGTCTGAAG 3243798 37 100.0 36 ..................................... TCAAAAGAAAGCCACGATACCAGGTGTCGTCGTAGG 3243725 37 100.0 34 ..................................... CCCGATGGGCGATGGGAGCCAGCAATTGTTGAGG 3243654 37 100.0 37 ..................................... AGATGAGCAGAAAGCCCGATTCGATGAGGCTCGTTCG 3243580 37 100.0 34 ..................................... GATACCGTCGCCAACTCCGGCTGTTCTCGCTCCT 3243509 37 100.0 37 ..................................... CAAAAGAATCATCCATTAGGGTTCAGCGAGCTGGCGG 3243435 37 100.0 36 ..................................... CGCCGGTTTACGGCTGAGGAACTTCACCAAGCTGTG 3243362 37 100.0 35 ..................................... AATAAAACCAGTGCTTTAGATTTGCGTTGACGACA 3243290 37 100.0 34 ..................................... ACGGAGTGAGACGTTTGCTACTGGGCGTACTGCC 3243219 37 100.0 35 ..................................... TTCCTCGATTGTGGGTGGACTTCGATGGAATCCGA 3243147 37 100.0 35 ..................................... ATCTCGATTGAGATCGAGGCTGGGAGGAGGGACGG 3243075 37 100.0 38 ..................................... GTAACGACATCAATGCTTCTGGTGGGATCTGCTTGCGT 3243000 37 100.0 34 ..................................... GAGGGGGCGATCGCTCAAGTCCAATATGAAGACG 3242929 37 100.0 34 ..................................... GAATCACTCATGCGACTCGATCCTGAATACGCTA 3242858 37 100.0 42 ..................................... GTGGCACTCAGAGCGATCGCACTCTGCTGCCCCACCGTCAAT 3242779 37 100.0 35 ..................................... GAGGATAGGGAGCTGTTTGGGCGGGCGCGCGGGTT 3242707 37 100.0 39 ..................................... ATCCCATCCCACTTGAGTAGAAGGCTTGGGAATAGATTC 3242631 37 100.0 39 ..................................... GCTTTGCAGCGGCAGCGGCAGCGGTTGCGCGAGCGTCGA 3242555 37 100.0 31 ..................................... GATATTCCGAGCGCCCCACTCATGCAACGAC 3242487 37 100.0 35 ..................................... CCACCCAAGTATTTGACTGAGCTACAACGCTCGAC 3242415 37 100.0 35 ..................................... AAAGAAAATGCGAGCATGACACCAGATCGCAAACG 3242343 37 100.0 35 ..................................... GTAAGAGCAAGGTCGATCTCTTTCGGGAGTATAAT 3242271 37 100.0 35 ..................................... ATTTAAATCCGCACTGCGAGCCTGAAGTGCAGGGA 3242199 37 100.0 37 ..................................... AGAAAGTTACTGGGTATTGACAATAGTCAAATCTTGA 3242125 37 100.0 36 ..................................... TTCAGAGAATTTCCCCCATCCCTCGTACCATCTACT 3242052 37 100.0 39 ..................................... TTCTTCTCTAATCAATTTTGATAATGAATCATCTAATAG 3241976 37 100.0 38 ..................................... ATGAGTGATAACTTCCGCTAAGCCTTATGGTAGATAAA 3241901 37 100.0 36 ..................................... TCGATCTGATTGCGATCGAAGGCGATCGAAGGCGCA 3241828 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 84 37 100.0 36 GTTGCAATTACGCTGAAACCCTCTCAGGGATTGAAAC # Left flank : TCTGATGATAAGCGGCGGACGAAGATTCATCGAGTGTTGAAGTCTTACGGGCAGTGGATGCAGTTTAGTTTATTTGAGTGCGAGTTGACGGAGACACAGTATGCCAAGTTGAGGATGCGGTTGAATCAGTTGATTGATGCTGAGTGCGATAGCGTTCGGTTTTATTTTCTCTGCAAATGTTGTCGCCATAAGGTGGAGCGGATTGGTGGGGAGCGGTTGGATGATGGCAGTATTTATTTTGCTTGAGGGTGCTGCGCGAATGGGGGGTTGTTGGGCTGGCGGGGAGGGGATAGGGGGTTGGATGTCGGTTTGGGTGAGGGATTCAGGTGTTTGAAGGGTGATGGAGGTTCGCGCGATCGCTCTGATGCTGATTCTGCCAAGTTTTTATTAACTCATAGTTCTAATCTTGGAAGTCTAGGATACTCTAGTGAATGAGCAAGTGGTTGGTTCGCGCGTTTGTACCTTGAAAACTAAATATATCAACCCTCTCAGAGCCTGCG # Right flank : TCGTAAATCGGCACCCCTGAATTCGGGGCGTGGTTCAACCATGTGGATTTGTCAATGGCGATGACGCTCGTGTGAACGATCTTAATCTTCAAACATTTTATACTATCCTTAAAGTACTCAGAGCAGTGCGATCGTGAAATCTCCTCGACAATCAACCATCCGTAGTCATCGTCGTAACGATGCCACACTTTCCTCATTCGTTGTGAAGGTGCTGCGCCGCAATCAAATATAACGTAGTTGGTAAACCACTCACAGAACCACGCACGCGGTCACAGCTGAAGAATCTATCGATGAATTCTCAATCGCTTTATACTCCTTTCTTTTCTAAAGTTACACAAAACCCTGTCGAAATCCAAGAGAATTTCATGGTCTTAATATCCCATTCGGTAAGCCTCTCCATGTTGAAAAGCCGCCCGAATTCTACCAATCAACTTTCTGGCAACAGCTACGATGGCTCGCTTCTTCCCGGTATGAGGATGGAGTCTTTCAAAAAATTCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATTACGCTGAAACCCTCTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 7 3934270-3935457 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001776.1 Synechococcus sp. PCC 7336 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3934270 36 100.0 35 .................................... AAATAACTGCGCACACCATTTGTGTCCAAAGAAGT 3934341 36 100.0 36 .................................... AAGCAGTAAGACCGTATCCTTGACTTTGAGTTTCAG 3934413 36 100.0 37 .................................... CTATTATATTTTCTAAATAGAGTACCCTACTTTCTAA 3934486 36 100.0 35 .................................... CAGCTCAAGCGGGAAAAGACGATAGTGGGTGACAT 3934557 36 100.0 34 .................................... TTAACAAAAAAACATTCGTCTGGGCGGATCGATA 3934627 36 100.0 38 .................................... CTCGTCAAAACTGATAGTTGACCTACGAAATGATTTTC 3934701 36 100.0 35 .................................... CCACCGAAATTTTCTTCTAATAGTTCAATGTTATT 3934772 36 100.0 36 .................................... GTGTCTCTACTGGTATCTATATAGGTGAGTTGATTC 3934844 36 100.0 37 .................................... AAGTCTCCCATGTGAGAAGCTGTACACTTTGGAGAGC 3934917 36 100.0 36 .................................... ATATAGCATCCCATCGAATAGAACCTCAGGTGTTTC 3934989 36 100.0 36 .................................... GTTATCTATATCAAACCAAATCAGATGATCTATACC 3935061 36 100.0 37 .................................... GGCTTCCTCCTTTTTAAAATGGACTGCTACATAATCG 3935134 36 97.2 36 T................................... AATGGTAGACTTTGAGGCTTTGCGCGGGATAAATAA 3935206 36 100.0 36 .................................... AAGACAGACAGGCGCTCGTTGAGCTCTTTATTTCGA 3935278 36 100.0 36 .................................... AGGGGTAAAGGGTGGTGATTTGGTACTTCGAGATTG 3935350 36 100.0 36 .................................... GGGTCTTACTGCGGGCCTTTTTGACCTCATGTCCGC 3935422 36 91.7 0 ................................TG.T | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 99.3 36 CCTTTTCCCATTCGTTGGAATGGATTAGTTGGAAAC # Left flank : TTGGAATTGGATTTCGCAGAACCAGACGGGTTTGGGCGATCGCTCGTCTTTGGGGACGAAGACGCCGTCGATGCGAAAGGCTTTGTCGCGGACGAAGACGGTTTGTTTGACTTCGATGGAGTCGAAGCGGTAGGCGTCGGCGTCGGTATCGGTTTGGCCTTGCAGTTGGAAGAAGCTGGCGGGGTAGGTGGCGAATAGGGTGTAGAAGATGGAGTCGGTTCGCACGGTGGAGGGGTCTGGGGGGTTGGGGGAACTGTATCGGAATTGAGGCGGGATAACCAACGTAAATTTGGGGCGATCGCTGTGGGTTTCAAGGGGGTCGGGCGATCGCTGAAACCCGCATTCTCTCGTTGACCCCCTTGAATCGCTTGTGGGGTAAGGGGTTGAGGCTGTTTTTTGGATTGGTTGTTGATGCTATTCTCAATTATTTTGAGGGCGACTTGCACCCCCTTGAATTTTGGCTCTAGAATCCTTGTATGGTGGGGCTCTCAGAGCTCGCC # Right flank : TGCGATCGCCTAAAATTGACTGGTGCGATCGAAGATGACTCGGACTGGCATTCTAAGCTGCTGCATTAGCCCCCTAAATCCCCCATTCTGGGGGACTTGTGAGAGATGATTTGCTATTGCTTTGGGGTTGCTGGCGATCGCGTAATACCTGGTTTAAAGGCTCTATGCTATCGAGCTTTTGAGGAGGACGATCGCAACATTTGAACGCAAACAGGCGATCGTCTTACTGCTCCAGTGGCCACAACTTCTCAAACTCACTTCGAGTCTCCAAAAACTCTAAAAACTCATCAAACGTTTCAGACCCATCGGGAAACAAAGTCAGCAACTCGTTATAGTTTTTCGTTTTGACATACTCCGCCGTCTTTGGGTCCGCCTTGCGATCTTTCGGGACCGCGATCGCATACAGCCGATGCCACAACCGCCCCACCTGCCCCAAATGACCCGTCACCGATGACTTGGCGATCGTATAATTCGGCGATCGATACGGCCCGTGCAACCAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTTCCCATTCGTTGGAATGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 3942427-3942747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001776.1 Synechococcus sp. PCC 7336 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 3942427 35 100.0 37 ................................... AGCAAATGCAATCCACTTACATCGAAATCCTAAACGG 3942499 35 100.0 35 ................................... AATCTCAGCTACGAATGGGCTAGTCTGCCGGTAGG 3942569 35 100.0 38 ................................... CAGTCCTAAACGCCACCTCTCGTTCAGAACAGTGAGCA A [3942578] 3942643 35 100.0 35 ................................... CAAACACGCGAGCACCACTGTCTGTGTTCTCTCCG 3942713 35 77.1 0 ...........................AACCTCTT | ========== ====== ====== ====== =================================== ====================================== ================== 5 35 95.4 36 TCTCACCGATTCTTTGCGATCGGATTAGTTGGAAA # Left flank : CATGGATTTGCTGTAGAAAAATTGGGGTATTAAAGAATCGAATTGAGAATTTTTTTTCTTCTCCTTTTAATGGAATCATGCCAATGCGCCCTAAGACTTCAGCTCGTGTGAGCTCTGAACGGCGTAGTTCGAGGGGTAATTCAAATTTATTATCGCCATAGCACAGCATTACCTTTACCTTTTGGTGCTGAAGCTTTTTCTGATGCTCTTTCTCCTGCTCGAACCTGTGTTCTAAATTTGCGATCTTCTGCAAAATAGCTCTGGAAGATTCTCCTTCACCCAAGACAAATATGCGATTCAAGAAAAAGAAGAGTATACCAACTGCCAGAAGTTCTGATGACAGGTTAATTGCGATCGCCTGGAGAGTTCCTTGAAAGAAGCGATCGCCAACTAAAGCAAGGGTGACAGACAGAGCTATCAGGAGTCCATAAACCGCTAGCTCGTAGCGTTTCAGTCCGATCTTATCTTATTTGGCATTGGCTTTGTCGGCATCACCTACG # Right flank : TCCATGTTGAGACCTAGAGTTTTCAGACATTGCACTCAGCCCCCTAAATCCCCCACCAGTGGGGGACTTCCGCGAGGCTATTGGCTTCGTTCTGCAACTGTCGATCGCAGCGATCGCCGCTCGCCTTCCCCGTCTCCCAATTCCAACCGGCACTGCACACAAGTCCCCCAGAATGGGGGATTTAGGGGGCTAATGCAGCAAACCACAGCGCTAGTAGGAAAAACTCAAAGCTATGGGTTTCAAAACAGACTCGGTTTAGTTGGAAACTTGAGTTAATGCAACCTCCTCCAGATTTCCATATGCATCTCACCGATTCTTTGCGATCGGATTAAACCTCTTCCATGTTGAGACCTAGAGTTTTCAGACATTGCACTCAGCCCCCTAAATCCCCCACCAGTGGGGGACTTCCGCGAGGCTATTGGCTTTGTTCTGCAACTGTCGATCGCAGCGATCGCCGCTCGCCTTCCCCGTCTCCCAATTCCAACCGGCACTGCACACAA # Questionable array : NO Score: 2.83 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCACCGATTCTTTGCGATCGGATTAGTTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //