Array 1 2807162-2805934 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF571038.1 Tetrasphaera jenkinsii Ben 74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================= ================== 2807161 29 100.0 32 ............................. TTGACCAGCCCGAACGCAGCCAGCGCCTCGCC 2807100 29 100.0 32 ............................. GGGGCCAACAACCCGGCCTATGCGGCCTACGC 2807039 29 100.0 32 ............................. ACACAGCATAGGTTCACCATACTATGTGGCTG 2806978 29 100.0 32 ............................. CAGGATCGCTGACGAGTGGAAAGGCGTGGACG 2806917 29 100.0 71 ............................. GTGCGTCACCGCCCGTGCGTCACCGCGGTCGGCTCGTCGTCGTAGAGTCGTCGTCGTAGAGTCGTCGTAGA 2806817 29 100.0 32 ............................. GCGGCATCGGCAGCTTTGGCTAGCGGGGCGAG 2806756 29 100.0 32 ............................. CCTGCTCTCACGGCGACCACGCCCGCGCCAGT 2806695 29 100.0 32 ............................. TGCTGCTCGTCGCGGTCAGCCTCGCCCTTCAA 2806634 29 100.0 32 ............................. ATCGCGTCCTCGACGGCCAATTGGGCGGCGAA 2806573 29 100.0 32 ............................. GACGGACGCCCGCCTCTGAGTACCAATGCGCC 2806512 29 100.0 33 ............................. CCTGACCTTTTCAAGATCGGCGTCTACCAGGCG 2806450 29 100.0 32 ............................. GCGAAGGAAAACCCGTCAGTCCTGGTGTCGCA 2806389 29 100.0 32 ............................. GCGCTCAAAATCCTGATCCGCAACGGGTCCGA 2806328 29 100.0 32 ............................. ATCCACCAGTCACCCGCCCCGCGCCGGACGAA 2806267 29 100.0 32 ............................. CCGCCGCCCGGTGGGCAGTACAGCTCCGCGCC 2806206 29 100.0 32 ............................. CGTGACGCTTGAGCGGCCCTTCTTTGATCGGG 2806145 29 100.0 32 ............................. CTTCGCTCCAGTATCGGCACCGACCTCACCGT 2806084 29 100.0 32 ............................. GGCGGCGAGTACCTGGAGCTGAGCAGCTACCT 2806023 29 100.0 32 ............................. TCGCTCTCCGAGGTCTTCACGGCCGCCTTCGA 2805962 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================= ================== 20 29 100.0 34 GTCCGCCCCGCCCGCGCGGGGATGAGCCC # Left flank : GGACTCTGAGACCGATGCGATCGAGGATGCCCCCGACTGGGACGTCATCTACCTTTGGGACCGCAAGGGCGACCGCGTGGTTGGCGGCCAAAACCACTCCGACGAAGCCCCGTGGTAGTCCTCGTCGTCACGGCGGTGCCTGCCGGTCTGCGCGGCCACCTGACCCGCTGGCTATTGGAGATCTCACCAGGCGTGTATGTCGGCCACCTGACTCGCCGGGTTCGCGACGAACTGTGGGAACGGGTCGTCGAGCTCTGCAAGGACGGCCGGGCCATCATGATCGAGTCTGCCAGGGGTGAGCAGCGCCTCTACTTTCGCGTTCATCGGCACGACTGGGAGCCAGTGGATTTTGACGGAGTGCAATTGATCCGGCGTCCAAGCGCACCCTCGGCTCGGTACTCGGGTATGCGCTCAGGTTGGAGCGCCGCCAGCCGGTACCGTCGAGGGAGAAAGTGAATCCGGAACGCCGTTCATGCAATGATTTACCCTGCTCAGCAAGT # Right flank : TGCTCATCACGGTCACCTGAGGAGAAGACAAAGTCCGCCCCGCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGACCCGCCAGACCCCTCCGCGGACGCAATAACCCGACGGCCACCCCTCCGTCAGGTTATTGCGTCCGCGAGGGTTGTCAGCGGGCCGATCCGGCGCGTCAGGCGGGGATCGCGTCCCGGGCAGCGGGGCCACGGGCGTGGGCGGCTTCGTGGCGGCCGGAGGGGTACTGGGCGGCGCGCCATACGCGCGACACCATCCAGCTGATGCCGCCGAGCCGGATGACCAGGAACAGCCCGTACCACGGGCCCGGCAGCGCGCGGTCGGGCCGGGTCAGCGCCCCGATGTAGAGCCAGATCGCGATGAAGTGCGCGATCTCGGTGCCGGCCCAGATCAAGTGATCGCGCCAGCGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCCCGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3240549-3241799 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF571038.1 Tetrasphaera jenkinsii Ben 74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 3240549 29 100.0 32 ............................. CTTGCGATTGACCGTTCCGCGAACCGGGCGGG 3240610 29 100.0 32 ............................. AGAAATTGCGTCTGGCCGAGGGTCCAGATAGC 3240671 29 100.0 32 ............................. GACCAGATCGAGGCCAGCGGCGAACCCGAGGT 3240732 29 100.0 32 ............................. GCCAAGGAGAACCCATCGATCCTGGTGTCGCA 3240793 29 100.0 33 ............................. GTCTCAATCGAAACGTCCTCGGTGAGCTGCTCG 3240855 29 100.0 65 ............................. CTTGCTAATGCCCACCGCAGCCAAGGCCGCGGGATGGACAGCTGCCGCACCGTTGCGACAGCCAC 3240949 29 96.6 32 .......................T..... GCCCTCGCAGGGGCGTCGGTTCTGACGGTTTC 3241010 29 100.0 32 ............................. TCGGCCTGGTTCGCGGCATACAGCGCCTCCAG 3241071 29 100.0 32 ............................. GAGTGGGAACGGGAGGTTTCGCGGTGAGCGAG 3241132 29 100.0 21 ............................. GAGAGCGCCAGGGGTGATGGC Deletion [3241182] 3241182 29 100.0 14 ............................. GGGTGGGTCCAGGG Deletion [3241225] 3241225 29 89.7 32 ACT.......................... TCCGCCGTAAAGCGCCTGCGCGATCAGCGCTT 3241286 29 100.0 32 ............................. TCGCCGATGCCTTCGAGGGGCACGAGGGTGCC 3241347 29 100.0 32 ............................. GAGTGAACGGCATCGCCGCCACCGACCGCTGG 3241408 29 100.0 29 ............................. ATCGTCTCGGGCCTGTCCAATGCCGGCAG 3241466 29 100.0 32 ............................. GCGGCGCTCTGCGGGGTGCCGGTGTCTACCGC 3241527 29 100.0 32 ............................. GTGAGCAGCCGCGTCACCGGATGTTGGCGCTC 3241588 29 100.0 32 ............................. ACGATCACCCTGCCACCCGCTGCCGGCACTGA 3241649 29 100.0 32 ............................. GGGAACCCGAGACGCCAATTGGTGATGCCGTT 3241710 29 96.6 32 ..........................T.. CGCAATTCCTTGACGTGACCGCGTGGCAGTAA 3241771 29 93.1 0 .......................C...T. | ========== ====== ====== ====== ============================= ================================================================= ================== 21 29 98.9 32 GTCCGCCCCGCCCGCGCGGGGATGAGCCC # Left flank : GCGCGGGTTGACTTCCTGGTGACGGGGACGAAACTGGTCGTGGAGTTCGACGGCAAGGTCAAGTACGCGAGCGGGGACCCCGAGGTGTTGTGGCGCGAGAAGCGTCGTGAGGATGCGCTGCGCGCGCTCGGGTATGACGTGGTCCGCCTGACCTGGGCCGATCTGGAGCACTCGGCGCAGGCCATGGCGAAGGTCCGCCGCGCGTTGGCGCAGCACGCTCGTCGCCCCTGAGCGGGCGCGCGCCCGAGTCGCCGGCCGCGCCCGAGTGGCTGGCCCCGCGCAGAGGCCCGGGACCTAAAAGGGTTGGGTGGCTTTCCGGCGCTTTGCATGGCAAAACCACAGCCAGAAAGTCTCCCAAAGCGCCGGGAACTGGGATTGGGCGGGAATCCGGCCGGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : CTTCTGCGTCGTTAAGGTGACGTCGGCGCTGGCATCGAGCCAGCGCTCGAGTCTCAACATGATCAAGCTGAGCGCGGCCGCTTGGGTGGCCTGCGTGCGCGCTGGCAGGACGCAATTGAGTCCCGATTAGTCGTGTAGTGCGGCCGGGAGGTCGGAGTTGACGAGGCCGGCAAACGGAGAGGCGCCGCAGACGAGAGAGGGGTGGGAGACGAGGCGGTGCCGGGCATACCTTGGGCGGGTGCTGAGCAGGCGGCCGGAGAGTCCAGGACAACTCTGCGCTCAGGTCACACCTTTGGGCTGAAGTCACACCCTCGGGCCCAGGTCACCCTCTAGAGCCATAGACCTGGTCGCAAAGGTGTGACCTGAGCGCATTCCGGACCACGACCTCCACGTCCTGGGTGCGGCCGTGGCAGGGTGGCGGGTATGCGCGAGCTCCACGACCTTACGGCCCTTCAGTTGGGCGCGGCCGTGGCGGCGGGGGAGGTCACGCCATACGAACT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.19, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCCCGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //