Array 1 118632-115065 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGS01000005.1 Halomonas subterranea strain CGMCC 1.6495, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 118631 28 100.0 32 ............................ CATTTACGACCGCCATTGCGCGATTGCTCCAG 118571 28 100.0 32 ............................ AGACGCCATCTTGAACTTCTTCGATGAACTCG 118511 28 100.0 32 ............................ GGCCACCAACAACAGTGACCCGATGACTGACT 118451 28 100.0 32 ............................ GGCGTGCTACTATCATTCTCAGTTACGAGGAT 118391 28 100.0 32 ............................ TCACCGCTGATGGTCATGGTCAGCGGGTTGTT 118331 28 100.0 32 ............................ AGAAGCCTGACCGCACCGGTACAGGCACGCTA 118271 28 100.0 32 ............................ AGGGAGACGACGCATGATCATTCAAGCGGGCA 118211 28 100.0 32 ............................ TTGCGCATCGACAAGTGGGCTGACACGCGACA 118151 28 100.0 32 ............................ ACCTGACCCACCGCACTGTCACTCGGAATGGT 118091 28 100.0 32 ............................ TGACTCCAACTGCGTGAACATCTCCTTCTCGA 118031 28 100.0 32 ............................ TGACGGTGAATGGTGATATCGGTTGCAGTGGC 117971 28 100.0 32 ............................ CTGTTCCTGAGTCACTACACCAAGCCGCTGCG 117911 28 100.0 32 ............................ TGACAGGCTTGCTGAGCGCGTCATGGAGCTGG 117851 28 100.0 32 ............................ ACTCACCCCGGTGTTCGCGTCGGGCAATCTCC 117791 28 100.0 32 ............................ CGTGTATGTGCAGGACAGTGACGCGATCCGTC 117731 28 100.0 32 ............................ CGTAATAGATCGCCTCAATGAAGTCGATGAAC 117671 28 100.0 32 ............................ ATGCCGCCCGGAACGCTGAAGTCGTCGTCGGC 117611 28 100.0 32 ............................ TTCGACATCACCGCCGGCGACGCCGGCCAGTC 117551 28 100.0 32 ............................ CTGGCCACCGGCCTCGAGGAGAAGGCGCTGCT 117491 28 100.0 32 ............................ AGCGACACCAGCCGCGAATCCGCCAAGGATCG 117431 28 100.0 32 ............................ AATGAGCAGCGTCAGGGTCGCCACTACACAGC 117371 28 100.0 33 ............................ CTCGAACGTTCTGCAGCGCGATCCTGTGCTCCT 117310 28 100.0 32 ............................ GAGAGGTAACAACGCCGCCGCTGGTAACGATT 117250 28 100.0 32 ............................ GTTACGCCAATGGCGGCAAGCGCTGAGCCGAC 117190 28 100.0 32 ............................ ACACAGACGCTTGAAAATCGCGCACCATTTCA 117130 28 100.0 32 ............................ TGACGCCGCGCCTTCTCAATCAGCGCGTCCAG 117070 28 100.0 32 ............................ TGTCATCCATGTGCCACATCCGGCAGGATGAT 117010 28 100.0 32 ............................ GGGTGCAAGTTCGACACACCGACGATGACCCT 116950 28 100.0 32 ............................ ACCGGTGCCGAGGACTACGAAAAGCAGACCGA 116890 28 100.0 32 ............................ TAGAGGTGGTCCTGTTTGGGCATACAGGTTAC 116830 28 100.0 32 ............................ TCTGGCGTGAATTGCGGATAACGGATAGCTGT 116770 28 100.0 32 ............................ AGCACGCGATAATCGGTAACGGTTCCGTCTTC 116710 28 100.0 32 ............................ TAGCTGGCACGCCATACATTAGACACATTGAC 116650 28 100.0 32 ............................ GCCCAGCGCCAGGCAATGATGGAACAGCAGGC 116590 28 100.0 32 ............................ AATATACGGGCCTCTTTTGGCCATACCGTTGG 116530 28 100.0 32 ............................ CAGCGGCACCGCCCGTAATGCTTGGAATTGGT 116470 28 100.0 32 ............................ ACGAGCTTGCCAGGGGTTGCCTCGACTCCTGT 116410 28 100.0 32 ............................ TCAACGCCGCCCAGCAAAAACGAATTGCCCGA 116350 28 100.0 32 ............................ ACGCTAAAAAGGGTGACATTGAGTGTGGCGAC 116290 28 100.0 32 ............................ ACGGCGCTTTGACTGACGCACTTCTGCACCCT 116230 28 100.0 32 ............................ TGATTACGGCATGCCCACGATGTGGACGTACC 116170 28 100.0 32 ............................ CACAGCAACGTGTACATAGGCGCGCAGCACCG 116110 28 100.0 32 ............................ AAAAAGCATGGATTGATCAAAGAAACCAACAT 116050 28 100.0 32 ............................ AAACGCCGATATCGTTAGCCCTTGAAGCCCTT 115990 28 100.0 32 ............................ AACATGGGGACGCATAACCCCATCGGCGACCG 115930 28 100.0 32 ............................ CGATCCCACTCCACCAACTGCGCCGCTTTTGC 115870 28 100.0 32 ............................ ACTGCATCACGCTATCAGGGGATACAACGGCA 115810 28 100.0 32 ............................ TATGGGGCGTGGCGTCGCATGCCATGGCGTAC 115750 28 100.0 32 ............................ CTTGCCAATGCAAGGTAACGCTTTACGCAGAG 115690 28 100.0 32 ............................ GAATGCCCGTTGTGAGTAGTCAGGGCTATACG 115630 28 100.0 32 ............................ TTTTACCCATCTATAGACAGTCTGTGGCTTAA 115570 28 100.0 32 ............................ TGCTGGCTTCACAGAGATCGCCCGGTTTGAAA 115510 28 100.0 32 ............................ TGAAACATGATCTCCTCGTCGCCCGAGAAGTC 115450 28 100.0 32 ............................ AACCCTGGCACTTGTCCGAGCTGGCAGGGTTC 115390 28 100.0 32 ............................ GAGAAGGCCGAGCGTGAGCGTCTGGCACGGGA 115330 28 96.4 32 ......................T..... GCCGCTCCTGGTGCCGCTGAAGTGCAGCGACG 115270 28 82.1 32 ..TAA.......T.........T..... GAACGCACCTTGTCCAGTGGTGCTGCCTGAGA 115210 28 85.7 32 .CT........TG............... CATAGCACGTTGCGCAGGGCTTTGCGGGCAGC 115150 28 85.7 31 .CT........TG............... ATGGCGTGTAGGCGTTACCTTTGTCGGTATC 115091 27 78.6 0 .CT.................-..T.CC. | ========== ====== ====== ====== ============================ ================================= ================== 60 28 98.8 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGTTTGCAGCAGCTAATGAGTGCAGATTGGCTAACCGGCATGCGCGATCACACCCAGGTTAGCGAAGTGCTTACGGCGCCTGCTAGTGCTCAGCACATCAATGTGGCGCGTAAGCAGTTTAATACGGGCAGCGAAAGCCGGGCCAAACGTTACGCCAAACGGCATGATATCTCGGAAGACGAAGCGCGGAAGCTTTATGCCAAGCTGGCAGAACGGCGTATTGAGCTTCCCTTCGTGCAGATCAATAGTCGTTCTACCCAGCAGCGTTTCAGCCTGTTTATTGAACATGGCAAACCAGCCGCGTCTGCCACGGAGGGCGAGTTCAGCCATTACGGACTAAGCCCTAACGCCACGGTGCCCTGGTTTTGACCCTTTTTTTCAGTGATCAAATAGGACACCAATAATCAACCACTTAGCGGTATCGCTCCGAAAAGGGTGATACCGCTTTTTTCGGCTAAAGCTCTTTAACAATCAGTACATTAATTTTGATATGCTCTA # Right flank : GGTTAATAAATCTACTCCTCCGGACTCGGCTCCATAGCGCGCTTGTCATCGGGTAGGCGGACGGTGTCGCCTTTTTGGAGCTTGCCGCGGCTGTCGAGGCGTTGGCCTTGGGCGTTGATGATGGCGACGACGTCACCAATGCTGACGGCATCGTCTTCACGGTAGCTGCGAACGTCAACGCGTACCGAACAGCCCTGGTATCGAGCAGAGATGATATCGCCGGTCTGCGGCGTGGGGTTGGCGTTGGGGTCCCTGGCGTAGAGCCGGGTAACGCTGGCGCTGCCTGGCTCGTCCCACTCAATGTGTCGATGCATTGCAAACTCCTTCTTTATAATGCGTTGCACGGGAATGTCATTTTTCTAGCGTAGTCTATTCGTTGGCTTCGTTGCGTTTGGGGTCATCAACGTGCTGAAACATGAAGTTAAGCGCCGCGGGCAGGCTGGCCCGCCAGACTTTCCAGGTGTGGCCGCCGGGGTAAAGGTCCATGTGCACTGAGGTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //