Array 1 20873-20173 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAIF01000055.1 Escherichia coli strain TZ5_S scaffold_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20872 29 100.0 32 ............................. TTGGCGGTTACTGAGTAAAAACGACGGCCAGC 20811 29 100.0 32 ............................. CCACGATATTTCCGCCGTTCATGATGAAATGG 20750 29 100.0 32 ............................. ACTTACGCAACAAATCCCGCCTAAACAACCAC 20689 29 100.0 32 ............................. CCATCATATGAACCCAGGCACGGCACGCGCTC 20628 29 100.0 32 ............................. TTTTCATTACCGACACCCGAGATCTGGAGGGT 20567 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 20506 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 20445 29 100.0 32 ............................. CCGCCGTTATATGGAAAGATTCCGGTTTGGTA 20384 29 100.0 32 ............................. ATGATCCGCGTGCGACCCTCGTTATAGTCTGC 20323 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 20262 29 100.0 32 ............................. CTGAAAAAAAGGGACTGGGTAACAGCGCGTGA 20201 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : G # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21-1086 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAIF01000515.1 Escherichia coli strain TZ5_S scaffold_514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 ............................. TTGCCAAAAGACTTTTCTGACTATATTGAAAG 82 29 100.0 32 ............................. CCGCGATAACTTCCCGCCGCCGCTGCCGCATC 143 29 100.0 32 ............................. TTGAATTACTGGCGCAGGACGTCGCAATTTAC 204 29 100.0 32 ............................. CCACAGCAGATGGAAAAGGGGACTGAATAAGA 265 29 100.0 32 ............................. TTGGTTACCTCGCTGTTGCTGTGCTGCTGGCG 326 29 100.0 32 ............................. TTGGTTACCTCGCTGTTGCTGTGCTGCTGGCG 387 29 100.0 32 ............................. CGCTCCTCCAGTTTATCCAGCACGCCGATCGC 448 29 100.0 32 ............................. GCTGACGAATTAGATAATCCAGATAATGATGA 509 29 100.0 32 ............................. GTGAGCCATTACAGCGTGTACAGGCGGTCACG 570 29 100.0 32 ............................. CCGCTAATGCGCGTATCTCATGGAAGGTTGGA 631 29 100.0 32 ............................. TTTTTGTACGTCATGATGCGTCTCCATGTAGC 692 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 753 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 814 29 100.0 32 ............................. AAAAAACAGTGGTACTACCGCCCCGCCGAACA 875 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 936 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 997 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1058 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTGTATAAGAGACAGAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //