Array 1 612551-613312 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMR01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07187 WH-SGI-V-07187_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 612551 29 100.0 32 ............................. CGCTGACGACGGTCGCCGAGTGTGACCGCATC 612612 29 100.0 32 ............................. CATGCCCGCCAGATCGGGGAGGGGTTGCTGCC 612673 29 100.0 32 ............................. CCGGTTCTGCAGGTTCTCGAACTGGTCGCCGG 612734 29 100.0 32 ............................. TACCTGAGCCGCAAGGTAGGCGTGATCGTCAG 612795 29 100.0 32 ............................. CTGTAGGTGGTGACATCGTCGTACGGCGCGGA 612856 29 100.0 32 ............................. GGGAAATGGGCTTGAAGGGCGAAGGGAATGGT 612917 29 100.0 32 ............................. GCAGTGACCGCCGCCGGCCTGGACCTGGTCCG 612978 29 96.6 32 ..........................T.. CCCCCAGTTTGGGGGCTTTCTTTTTGGCAAAA 613039 29 100.0 33 ............................. TCCGCCGACATCGACCACCCCAACGATGCTGCG 613101 29 100.0 32 ............................. CCGAGATGTGGCGCCGAAACGAGCGCGAGCGC 613162 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 613223 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 613284 28 79.3 0 A..........A..C..-.....A....T | C [613288] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 622486-623369 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMR01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07187 WH-SGI-V-07187_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 622486 29 100.0 32 ............................. GATGTCGATTTCTCGACCATCGCGACTGGCGT 622547 29 100.0 32 ............................. ATCACGTTTCCGACCGGGGGAAGCTGTCCAGT 622608 29 100.0 32 ............................. TCAGCTGCCGGAGCGGCCTCTACTCATCCTCC 622669 29 100.0 32 ............................. TTCACCACGGTCTGACCTGCTGCCAGCGTCTG 622730 29 100.0 32 ............................. CGGCTCATTGCGTTCGGGTGGACCGTCGAACA 622791 29 100.0 33 ............................. GCGCTGGGTAACCTACGCGACAACAGCGAGTTC 622853 29 100.0 32 ............................. ATCTTCCTTCTCGCGGCAGTCGTCTCGGCTGT 622914 29 100.0 32 ............................. CCTCAATGCGTCGCCCTCCCGAGAGCGACCGA 622975 29 100.0 32 ............................. GCACTCCAGGGCGAACTGGACGGTATACGGCG 623036 29 96.6 32 ............C................ GTAGTCCAGTGGCATCGACAGTTCGGCCAGGT 623097 29 100.0 32 ............................. AAACATCACCAACCGCGTCAGGTGCCGCGCCC 623158 29 100.0 32 ............................. TCAGGCGACTGCTTGATTTCATCGAAGGTCAG 623219 29 96.6 32 ....G........................ GCGGCACGCCTGGACGTGCTCCAGGACATCCG 623280 29 100.0 32 ............................. TTCTCGTTCTACAACAGCACGAACGGCGGGGC 623341 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCTAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGTCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCTGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 895-2183 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMR01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07187 WH-SGI-V-07187_contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 895 28 100.0 32 ............................ AATGACCTTCTCCGTCTCCAAGTACAAAGAGA 955 28 100.0 32 ............................ TTATCCCGGATGAAGGTCAGCGGACGCTCGAT 1015 28 100.0 32 ............................ GTTCGCTTCAGCAATACATCAAAGAGGCCACC 1075 28 100.0 32 ............................ AGCGCGATATGAACGACAAGTCCGACTCGAAC 1135 28 100.0 32 ............................ AAGATTGCTGACCTCATATCCGTCGTCTGCAG 1195 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 1255 28 100.0 32 ............................ AGACCCGACTTACTGATGCCGGGGCCGCCGTG 1315 28 100.0 32 ............................ GATCATTGCGCGGGTGCCCCGTCGATCATTGC 1375 28 100.0 32 ............................ TCTCGCAGATGCAGGCCGCCGACTTGCAGACG 1435 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 1495 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 1555 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 1615 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 1675 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 1735 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 1795 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 1855 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 1915 28 100.0 32 ............................ GTCGCGACAAGACCGAACCCGACAGAGAACGC 1975 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 2035 28 92.9 33 ....C................A...... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 2096 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 2156 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11450-10707 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMR01000014.1 Pseudomonas aeruginosa strain WH-SGI-V-07187 WH-SGI-V-07187_contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11449 28 100.0 32 ............................ CATGCTACGCCGGCCTTGATCAGTTCGCGAGC 11389 28 100.0 30 ............................ ACGAGCTGACGGAAAGTGATCCGGTAACGA 11331 28 100.0 32 ............................ TTACTTCTACTCGCTCGCCGCCGGCTACCAGG 11271 28 100.0 32 ............................ AGCAGCCGAGCGGGATCGTGCGTGAGCTGAGC 11211 28 100.0 32 ............................ GGCCAGGTCGAGCCTGAGCCGCGCACGGTGCG 11151 28 100.0 32 ............................ TGCTGCTGGATCTTGTTTCCGGGCCGGCGTGT 11091 28 100.0 32 ............................ AAGAACCGCACCGTCCACTGAGCGAAACCGCC 11031 28 100.0 32 ............................ ATCAAGTTCGACACGACTCGCTCCACGCAGTG 10971 28 100.0 32 ............................ TTATGCAGGACGACTGGCACGTCCGCATATTC 10911 28 100.0 29 ............................ CTCGGCATGCACGTCGACGCCGAGGCGCT 10854 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 10794 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 10734 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCATCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTTAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 415972-415044 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLMR01000065.1 Pseudomonas aeruginosa strain WH-SGI-V-07187 WH-SGI-V-07187_contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 415971 28 100.0 32 ............................ AGGTGCCGTTGTAGCGGCAGCGCCAGTACAGA 415911 28 100.0 32 ............................ TCAACGGCCTGACGGTCAGCGAGGGGCTGTTG 415851 28 100.0 32 ............................ CTGAATTCCCCCACGCGGTTGCAGAGGGAACC 415791 28 100.0 32 ............................ TGGACCAATCTGGAATGCATTGGCGAAATACA 415731 28 100.0 32 ............................ CAGATCGCAGACGGCACCGGCCCATTCGACGA 415671 28 100.0 32 ............................ AGGGCGTCCCCTTCCAATCTGAGCGTCGTCAC 415611 28 100.0 32 ............................ AATCCGTCCAGGCGGAGTACGCAACCACCGTC 415551 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 415491 28 100.0 32 ............................ GATGACGAAAGAGCCACCGCCGCCCTCCACCG 415431 28 100.0 32 ............................ TCCCATAGACTTGCCGATCTCGGCTGCGGCGC 415371 28 100.0 32 ............................ TTGACCAGATCGCGGCGTGGGGTGGTCGGCTT 415311 28 100.0 32 ............................ TGCCCGCCATCAGCGAAACCGAACATGCTTGT 415251 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 415191 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 415131 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 415071 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACACTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //