Array 1 2263762-2264644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070873.1 Escherichia fergusonii strain EF91 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2263762 29 100.0 32 ............................. GCGGCATTCAGTTTTATTTTCGGATTCATAGG 2263823 29 100.0 32 ............................. TGATCGAGCATATGCGCGAAAGCATGAATATG 2263884 29 100.0 32 ............................. CCGTAAACGCGCAATAGAAATACTGGCCCCGC 2263945 29 100.0 32 ............................. AATATCGTCTATATTTGGCGTCTCTCTTGAAA 2264006 29 100.0 32 ............................. TATGCCGTATTCTCCGCCGTCGCTGGTGGCGC 2264067 29 100.0 32 ............................. AGGAATTGAACTTTGCATTCAAACAACTCAAT 2264128 29 100.0 32 ............................. CTGCCGGATCATCAAGATTTGCGGGATTAATG 2264189 29 100.0 32 ............................. ATACTCACAAAACATTTTAATTTGTGGGTAGC 2264250 29 100.0 32 ............................. ATTCTGGAGATATAGAGAGATGTCGCGGTCGC 2264311 29 100.0 32 ............................. GTAGCACCAGTAACGAGCACAGTACGAGGCTT 2264372 29 100.0 32 ............................. TCCTTGTGGGTGAGAGTGATATCGAACGACGG 2264433 29 96.6 32 .....................A....... CCGAGGGGCCGAGTCGTGTGCGCCCTGCAATA 2264494 29 93.1 32 .........A...........A....... TTGGCGAGATTGTTAACGTTGCGATGTCTCAA 2264555 29 89.7 32 ................T.A..A....... GCTTCAGATACATATACTTTAAGTGCAGCGCT 2264616 29 72.4 0 ........A..T...A.AC.AA...T... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 96.8 32 GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAGTTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGCCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTACGCAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2280687-2281662 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070873.1 Escherichia fergusonii strain EF91 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2280687 29 96.6 32 .A........................... GATTTCCCGTAGTACTCACTGCCATCTGCGGC 2280748 29 100.0 32 ............................. AGGTAAATTAATATAAATGCATCTGCCGTGAA 2280809 29 89.7 16 ..........................TAA ATGCATCTGCCGTGAA Deletion [2280854] 2280854 29 100.0 23 ............................. GATTCGTAAATTAATTATAGATA Deletion [2280906] 2280906 29 100.0 32 ............................. AAAAATATGCCAGCGTCACGTAATGTTTCGCA 2280967 29 100.0 32 ............................. CCGCGATGATGTTAAACTGTCGGGGCAAAATG 2281028 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 2281089 29 100.0 32 ............................. CCTCTGGATTACTACCGATAACTAACACTGAA 2281150 29 100.0 32 ............................. CCTCTGGATTACTACCGATAACTAACACTGAA 2281211 29 100.0 32 ............................. CGATTATTTTGGAGTAACTATTTTTCGTGAAA 2281272 29 93.1 32 .A...................G....... TATTGAAAAAATTTCCGTTCGCAGCCATTCGG 2281333 29 96.6 30 .A........................... GATCCCGTAGTACTCACTGCCATCTGCGGC 2281392 29 100.0 32 ............................. CCGCGATGATGTTTAACTGTCGGGGCAAAATG 2281453 29 100.0 32 ............................. GATTTCCCGTAGTACTCACTGCCATCTGCGGC 2281514 29 100.0 32 ............................. AAAAATATCGACAACAGTATGATAGTTAGACG 2281575 28 89.7 32 ............-.T.....A........ TGCAGTACGCCTGATGACAAACCAAGCATCGG 2281635 28 79.3 0 .A..........T.........-.CT..C | ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.8 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : CAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //