Array 1 46587-47214 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_SDPE01000009.1 Haemophilus haemolyticus strain 65117 B Hi-3 Contig_2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     46587	    32	 100.0	    33	................................	ACGTTGTAGGCGAATTGTTGCAGTAATAGCTTG    	
     46652	    32	 100.0	    36	................................	AAGTGTTCAGGCACAACACCAATAACTGCGTCAACA 	
     46720	    32	 100.0	    33	................................	CTCACCCTCACCGACTTGCGGTAAGTAGCCAAA    	
     46785	    32	 100.0	    34	................................	CCGCTCAACAAACCCACTCTTTTAACTGGCATCA   	
     46851	    32	 100.0	    34	................................	ACGTTTTTCTTTCAAGAATATTGCGAGAAACACA   	
     46917	    32	 100.0	    34	................................	AAACGTTCTTTGTAGTCTTTATCTTCAGGTTTAG   	
     46983	    32	 100.0	    34	................................	CACTCAACGATGTCACTGAGGAGCAAATTAAAGC   	
     47049	    32	 100.0	    33	................................	TCGCAGTAGGTACTCAAAATTTGCTTTCCAGTG    	
     47114	    32	  96.9	    37	.....................C..........	ATTCAGCAAGGATTGTTTACCGTACGAGTAGGGCGAG	
     47183	    32	  75.0	     0	.T...........T..AA......A..T..GT	|                                    	
==========	======	======	======	================================	=====================================	==================
        10	    32	  97.2	    34	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAATGGGCAAGCGCGATTGCGCCGCATTGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCTACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAACATCATGGGGCAAAACCAGCAATAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATCTATTTGTATAACGGCGGTATGACCGTTATACTTATTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGAGA
# Right flank :  TGAGGATGAAAGAAGATAAATGACTATGTCAGTAAATAGATAAATTAATATTTAAATACAAAAGAGCGGTCAAAAATATGATAATTTTTGGCCGCTTTTGTTTATACGATTTTAATTTAACTAATTTAAAATATTAACCTGCTCTAAAAATTCTTCTTCTGTTAATACTGCAATATTTAGTTCCTGCGCTTTGGCTAGTTTAGAGCCAGCAGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGAAACAGAACCACTTACTTTTGCGCCTAGCTGCTGTAGTAATACTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACTGTTTCCCAATGTACACCTTGTGCGATTAAATCATCAACAACGGCAACATTATGTGCTTCACGCCAGAATACAAAAATTCTGTTTGCTACAACTTCACCCACATCAGGCACTTGTTGAA

# Questionable array : NO	 Score: 6.12
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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