Array 1 44413-41763 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKCR01000015.1 Klebsiella pneumoniae strain SCPM-O-B-8658 (KPB536) 15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44412 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 44351 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 44290 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 44229 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 44167 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 44106 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 44045 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 43984 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 43923 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 43862 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 43801 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 43740 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 43679 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 43618 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 43557 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 43496 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 43435 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 43374 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 43313 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 43252 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 43191 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 43130 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 43069 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 43008 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 42947 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 42886 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 42825 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 42764 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 42703 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 42642 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 42581 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 42520 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 42459 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 42398 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 42337 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 42276 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 42215 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 42154 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 42093 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 42032 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 41971 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 41910 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 41849 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 41791 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1976-1278 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKCR01000056.1 Klebsiella pneumoniae strain SCPM-O-B-8658 (KPB536) 56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1975 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1914 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 1853 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 1792 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 1731 28 93.1 32 ..........-..T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 1671 29 93.1 32 ............TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 1610 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [1599] 1548 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1487 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1427 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1366 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1305 28 89.7 0 ..........A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //