Array 1 682594-684207 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJF01000001.1 Gardnerella vaginalis strain UMB0830 .21837_8_82.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 682594 28 100.0 33 ............................ CCCAGCTGCCGCCGCCACTAGCGACAAATCCAC 682655 28 100.0 33 ............................ CTTCGCGCGATTTGCTAATGATTTCATCGTGCG 682716 28 100.0 33 ............................ CTCATGTGAAAAGTTATTCTCTTGCCTTTTCAC 682777 28 100.0 33 ............................ TGATATTAGCGTCGTCGGCTTTGCGTTCTTCCG 682838 28 100.0 33 ............................ CAGTATCACTAGGCGAACTTATACACGATAATA 682899 28 100.0 33 ............................ CAGGCGCATAGGGGCGGCGCTTTGCCCAATCGC 682960 28 100.0 33 ............................ CATGAGAACTAAATATGACCACAAAACACCACA 683021 28 100.0 33 ............................ TCACACTGAGGTGTGAAGTGGCCGCAAAGAAAG 683082 28 100.0 33 ............................ TCACACTGAGGTGTGAAGTGGCCGCAAAGAAAG 683143 28 100.0 33 ............................ TATTTTGCATCTCACGCCTCCTAGCAAACCACA 683204 28 100.0 33 ............................ CCAATGGTAGTGGCTAGAACCCCTAGCCTCAAT 683265 28 100.0 33 ............................ CTACTGTTTGAATATCCATTTTTATCCTTTCTA 683326 28 100.0 33 ............................ TTCACGTGAGTAAATATCTATCCAATTTGTAAT 683387 28 100.0 33 ............................ TATCCGAGGCCGAAGGCATGGCGTTACTCCGTG 683448 28 100.0 33 ............................ CGAGTGAGAACATAGCAGATACTATTGCGTCTA 683509 28 100.0 33 ............................ CGTCAAATTTGTATTGCATAAAAGCAATATCCT 683570 28 100.0 33 ............................ CATATTGACCCTATCACCTTTGCAGATACGCAA 683631 28 100.0 33 ............................ TAGTAAAACATTTGAAAACGGTAAACTTTTGAA 683692 28 100.0 33 ............................ CGTGAAAGTATTGAATCTTGGAACGCGAGCCGC 683753 28 100.0 33 ............................ CAATTGCAGATCACTATCCTTTAGAACGCTTCG 683814 28 100.0 33 ............................ CTACAGGCGCGGCGTGGTCAAGCCGTCAGATAT 683875 28 100.0 33 ............................ CTACAGGCGCGGCGTGGTCAAGCCGTCAGATAT 683936 28 100.0 33 ............................ CACGAGCTTTTTGCACACGTGGCTGATGCTATC 683997 28 100.0 33 ............................ TGTGCCATTTAAGGCGGAAAGACAAGTAGCGGA 684058 28 100.0 33 ............................ CATAGTCTTTTACAGCATTCACAAAGTATTCTG 684119 28 100.0 33 ............................ CAGTGCCTTTAAGGGCAATTACAAAAGACGGGA 684180 28 92.9 0 ....................A.....A. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.7 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : TTTATTCCTAATAAAATTATTGAGCTAACTGGTATTACAACTAATATGCTTGAGTCTTATGGTGTAGGATTAGATTTAGCATTAAGAGAATTCATTGATTTTATCGGAAAATTACCGATACTTGGATACAATATACAGTTTGATATGTCATTTTTGAATTCTGCTTTATCTTCATTAGGTGAAAGATTTGACGATTCTCTTTTAATTAATAAAATTTTTGATATCTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAATTACCAGCTAAAGACGGTGCTGCACGAATACAACATTTCTGAATCCGTTCCGCATAGAGCTCTTCTGGACGCTAGACTAACAGCGCATCTTGTTTTTAATTTGAAAGGATTGTTAAAATTTATTTCATAAAAATAAAATACTGTTGTACCATGTTCTGTGATAGGTTGAATTTGAAAAGTAAATGAAATTTGACTGTTTCTGTTATGGAAATGGCCATTTTTATTGGGATTTTAAGT # Right flank : CTATATAAATATTGTGATACAGTATAACCAGCGTGGGGACCTCGGCAACCAGCTTTCAAGACTGGAACATCAGTCTGAGGAGCACCCCACGTTTTTCAGTTTTTTGCAACGATTGAGCGAGAAAAGAAAAAAGGGTGGCGCGTTAATACCTTGTTCTCAGTTGTGGAAAATAAGAGAGGAGTGAAAAGCTAATGGATATAATGAAACTTTGCTATGACATGGCTGAGAAACTTCGGCCTTATGCTGAACCATACATGGATGAAACTTGGAAAGAAGCAGCCAATAGTGCTATTCGAGCAGGCGAACCGTCTATTGCAATTGATTATTATTTAGTAGAAGCATGGATGCACAAGAGTGCACCTAAAGAGTTGCTAATTGAAGCTTATAATTTGCTAGATCCTTATGAATGTGGTGATGACTATGACGATATAGCAGACGATTTAGGAGTCCCGCGTAAAGTTCATTCACCAGATGAATAAAAAATAATTTTTATACTAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //