Array 1 25978-26599 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODL01000003.1 Listeria riparia FSL S10-1204 c3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 25978 30 100.0 36 .............................. CTGCCCGCCTACTTTATGTTGCACACGCTCTTCTTT 26044 30 100.0 34 .............................. AACTTTTTGTAACAATAGCGTTACTGTTAATCAT 26108 30 100.0 36 .............................. TGGAGTTCTGCTGAATACACAACGCCATTTAAATTC 26174 30 100.0 36 .............................. GAGGGAGACGCAGGTTAGGTTAGGTAAGGATAGGTT 26240 30 100.0 37 .............................. CGTTCTACATTACAGCAAGCGACAAATACGTCGAGCT 26307 30 100.0 34 .............................. TTTATAAAATTTGCATAAATAATTCTTGGTCTAA 26371 30 100.0 37 .............................. CCTTCACTTATTACTTTTCCGTTTTCTATCGTGTAAG 26438 30 100.0 36 .............................. ACAATCTTGCCATCTACTGAAAATCGATAGTACGTA 26504 30 100.0 36 .............................. CGGACAGATAGCCAGTATATTACGGAGGATATGGAA 26570 30 90.0 0 .............C..C...A......... | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.0 36 GTTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAATATCAAACCCGTACCGAATTCCGAGAAAATTTGGGAAGCAGACATCGTTCTTATTGCGGTGGGATTTGCAGGAACAACCAAGTCAGTATTCGAAGATTTCCAAGTAGCAAAAACAAACCGCCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTCGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTTTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGGCATCGACAGATTTTGTTTTTGTTTAGGGGGAGAAGGGATTAGGATAGTTTTCGAGATTCTGAAAAAAATAAACAGATGCAAAAAAGATAAATTTCTAGGAGGTCGACAGATTTGGGATGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : TTGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTAGTTTTTATATAAACAATTCGAAATCTAGTAGCGTATCGGCAATTTCACACAACCCACCACCCAGATTCACCATTCTACAAAAATAAAAAAATCTGTCATCCCATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGGATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAATAGCGGATTCAGTACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACCAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 30249-31858 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODL01000003.1 Listeria riparia FSL S10-1204 c3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 30249 30 100.0 34 .............................. AACGATCGACTAATGACAAGTTAAAGTTATCCAT 30313 30 100.0 38 .............................. CATACAGTGATATGACCTATAACCCCTGCCATCCGACT 30381 30 100.0 37 .............................. ACGAAGGTCATGTTTGACATTGTCTAGTTTGTGTTGT 30448 30 100.0 36 .............................. CGAATCGTACATGTGTAGCTTACCTAGAGTATCTTC 30514 30 100.0 35 .............................. AAAATAAAATCTGGAAAACAAAATTCACCCGCTCC 30579 30 100.0 36 .............................. ATAATCGTAACGCATTTGTTGTACTTCTTCTTTTGT 30645 30 100.0 34 .............................. ACGGTCTATACGTCCAATCTGCCATTGACGCAAA 30709 30 100.0 34 .............................. AGTTTTATTGACGACTATATAAAAAATAGTCCGC 30773 30 100.0 39 .............................. GAAAATGCCATGAATGATATTGAAGGTATTTACGGTCGT 30842 30 100.0 36 .............................. ATTTTTATGCCAATCTTGATTTTTGCAGCTGGTATC 30908 30 100.0 35 .............................. AAAGATGTGTACGAAAAGTACCTTCAATGGTTTGA 30973 30 100.0 36 .............................. GTGCAACGATTACACCTTTTGCTCCTAACTGGATTT 31039 30 100.0 37 .............................. TCCATACGCCACCTTCACTTATTACTTTTCCATCTTC 31106 30 96.7 36 A............................. AGCTTGCTATTTGTTGTTATGTGTGTTAGCATGTGT 31172 30 96.7 36 A............................. AAAATTTTAAGGTATCATATGGTTTATTGGGGACAG 31238 30 96.7 34 A............................. ACAAAATATTGCAGGGAGGAGGGAGTGATAGTGC 31302 30 96.7 34 A............................. GTGCTCTACGAACTACATCCCCGAACTTGAATTC 31366 30 100.0 36 .............................. ATGCTAAGGAAAAATATAGTTTGCCTCCAGTTTTAG 31432 30 100.0 37 .............................. CCTTTTTCAGTCGCGGCTTTTCTTCCCGCCGCAATGG 31499 30 100.0 37 .............................. GCCCACGATTCATTGTTTCCGATTCAGAAAGTCATTG 31566 30 100.0 36 .............................. ACCTCCCTACCCGCTGGGTACAAGGTAGTTGATAAT 31632 30 100.0 35 .............................. CCAGTGATACCAACGCTTATCATCCCGCCACCGCT 31697 30 100.0 35 .............................. ATTCCGATCGTCACGAATAATCGTAATTCATTCAA 31762 30 100.0 37 .............................. CAGCGTGTCGTGGACTATGTATTGCTACTTTTGAACG 31829 30 93.3 0 .............C.........A...... | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAAAATGATCGGTTTCTTAAGGTTAAATCGTAAACTAAATCCATGACAACTATTCCAAAATGCATCCAATAATATTAAAAATAGGAAGCATTTTAGCATGGGAAGCCTGATTTGAAGTGCTAGATAAAGAACGCCTCATTCAGAAAACAACATTCGGCGCAAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAATACGAAAAGAAAAAAAACCTACAAATAGCGCGATGATTGTGCAAGACGAGAAGAACAAGATAATTTCTACAGAAAACCTTAATTCATAATAACGCGAAAAAAAAATCTGTCGACCTCTAGTAGCGTAAAATAATGGGGGGCATCGACAGATTTTTGTTATGCATTGGTACTAAAGAGTTTAAGCCTATTTTCGAAGATCTGATTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGCTGCCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAAGAACGACAACAATGACAATGTTTTTATCCAACCCCAATGTAAATATGAGACTCCCTCATAAACATAACATCCCCCAACCAAATAAACTATAAGCAACCACTAAACTCCCCAAAGTCTATAAGTGTTTTTTGTCATGTTCAAAAAACTATAAACTTGCTTACTGTAAATGAAACAAATAGGAAGTATAGAATATATTTCATACATTTAGAAAATATTTTGGTGAAAAACCATTTACAAAAATAAAATAATAGTGTAAAATTCTTTCTGAAAGGAGCGTTACGATGAATATTAATACATTAAAAGGACAATTGATAGTATCTTGCCAAGCTTTAGAAGGTGAACCTTTGCACAGTTCCATGATTATGGCGCGAATGGCGCTTGCTGCTAAAGAAGGTGGTGCTAAAGGAATTCGAGCAAATTCTCCGGAAGACATTCAAGCAATCAAAGAACTAGTGGATTTACCTATCATTGGCATTTGGAAACGCGATTATGAAGGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 91203-92606 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODL01000002.1 Listeria riparia FSL S10-1204 c2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 91203 30 100.0 35 .............................. CTGCCCGCCTACTTTATGTTGCACACGCTCTTCTT 91268 30 100.0 37 .............................. CTCGTCTTTGAAGTTGCAGCTTCGGGACGAGTATTTT 91335 30 100.0 35 .............................. CCAACTGCTACATTTTTAAAAGCACTGCGCCTATT 91400 30 100.0 35 .............................. GCGATTTATCTAAATCGCCTGTAATCATGCCACCT 91465 30 100.0 34 .............................. TAACCCACGTTGCGTTAGAAAGGATCCGCGCCTC 91529 30 100.0 34 .............................. TTAGTAAGTTGCATATGTTTCTTAAAACATCCTA 91593 30 100.0 34 .............................. AGAGGACTCAAGTACATAGTGCGGACAGTTTTCC 91657 30 100.0 34 .............................. TTTGTTGTGTCTACGTTATACATTTAAATTCCTC 91721 30 100.0 37 .............................. TAGAAGTCACATTTGATAATGACTATAGTTATAACGA 91788 30 100.0 36 .............................. GTTGTTCCAAAAGCAGTACTGGCAGCACGAAAAGCG 91854 30 100.0 33 .............................. CTTTAAATTTTGCTGTCATGCGTATTCCTCCTC 91917 30 100.0 36 .............................. ACGTTCGCTTTAGACACAGCTCCCGATTCGTTAGCC 91983 30 100.0 36 .............................. ACCAATTGGCAATGGCTTCCGATGCCACTGCTGCTG 92049 30 100.0 37 .............................. TTTGCTGGCGCTAAATAATTGTTTTTTTTCGCTTTCG 92116 30 100.0 36 .............................. ATAGTTGATAAACTTCTCGCCTTCTGTCATATGGAT 92182 30 100.0 36 .............................. CCTTTTTCAGTCGCGGCTTTTCTTCCCGCCGCAATG 92248 30 100.0 34 .............................. TTCATATCTCGGTTTTTTATGCACACCGAACCGA 92312 30 100.0 36 .............................. GCGTTAGTTAAGGTGCCGCAGTGTGTAGACGATTTT 92378 30 100.0 35 .............................. AACAATTAGAAAGCGAAATAACGATGGCTTACGGC 92443 30 100.0 37 .............................. TCACCTGCCTTTTTTGCGCTTTTCGCATCAAGGTAAG 92510 30 100.0 37 .............................. TCATTTCGCCGTCACGATCTACAATGATTCCAGCTTT 92577 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 22 30 99.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGGCTAGATGAGTTTTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCCCTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATGTTCCTCGGGTTTTTCTTTGTGGAAAAAGAGAGGACGGCAGATAGATGGTGTTTGGAAAAGCGGATACAATAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTATGAAAGGGTTTGAGCCTTTTTTCGAAGATTTGATTGTAAGGTTAGAGAGCGGAAATTTAGAATTTGTTTACCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TTTTCGCGAAGTGTGATAGTCATTCTTATATTCCAGCGCTTTAGTCATTTTTTAAAGAATCAATTATCATTTAACAATCTCGAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGACGTGAACGGGATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACAAAAAGTAAGGCGGAAAGCGTGATGCAAGAGGGGGCAATCTGGCATGAGACACCGCAAGATTTGGCGCCTCAGGTTGATGTGCTAATCACGATGGTTGGATATCCGACTGATGTGGAAGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTGGCGAAACAAATTGCCGAAGAGGGCGAGGAGCTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 234038-232511 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODL01000007.1 Listeria riparia FSL S10-1204 c7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 234037 30 100.0 34 .............................. TCATTAAAGCGCAACAACAAAACATCAACTTTTG 233973 30 100.0 36 .............................. AAATACAATAAAATCCATTTTCTCATTCTCCCTCTA 233907 30 100.0 36 .............................. TCCGAAAGTGAATGTAGTATACACCGCGTGGGAATC 233841 30 100.0 34 .............................. ACAACATATGGCTGCTTTGTTAATGATTCAATAT 233777 30 100.0 38 .............................. CAGAAAGGTTGATGAAATGTATGAGCGAAGTATTGAAA 233709 30 100.0 35 .............................. CTTCTTTTATATGCCTGTATAGCTATTTTATCTGC 233644 30 100.0 36 .............................. CCTTTTTTTATACTTTCTAGTTGCGAGTTCAAAAAT 233578 30 100.0 36 .............................. GAATGTGCGTTCGCTGTAACAGAGATTGGCGATGTA 233512 30 100.0 34 .............................. GCGTCTGAACCTTTTAATCCATTTTGCGCAAAAC 233448 30 100.0 34 .............................. AGCGCTAATACAGTAGAACAGCCTATCAGCATAA 233384 30 100.0 34 .............................. AGCGTTTTTAGAATCCCATGCGCAATTGCACGGC 233320 30 100.0 36 .............................. ATTGAATAGTGTGACCGCCGTGAACAAATAAAAAAG 233254 30 96.7 37 T............................. ACTATTATCCTGTACGATGATAATTCTAACGAGATTT 233187 30 100.0 36 .............................. TTTAGTTGCGAATTCAAAGCGCGCATTTGTGATTTT 233121 30 100.0 33 .............................. GAGACATCTCGGGATACGATGATGGAATACATT 233058 30 100.0 35 .............................. GATTCTTGCTGTGCTTGCTTTGATAAGTCATATGC 232993 30 100.0 37 .............................. ATAATGATTGTATCCGTTTAGGCGCCTTACCCTCTGC 232926 30 100.0 34 .............................. AAGGCTACTTATTATGATGAAATACTAAAATCAA 232862 30 100.0 36 .............................. TTTTTAACGTCTCCTTTTAGCTCTCGACTGCCTAAC 232796 30 100.0 37 .............................. GTTCTTAAAAAAAAAGAGATAGTAATAGAAGTAGGAT 232729 30 100.0 35 .............................. AGCGTAAATATAATGACGCGAACAGTTGATAAAGA 232664 30 100.0 36 .............................. AAAACAGAAGTAGAAGTTTGGTTTAGGAAAGTAATT 232598 30 90.0 28 .................A.....CA..... TAGGAAAAGGGCGCACTTATACACCCCC 232540 30 83.3 0 T......C.AG.............A..... | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 98.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGATTTGGTGGTGATACTATGTATATTATCCTGATTTACGATATAGCAATGGATAACGGTGGCCCGAAAGTATCGAGAAATATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCTGTCTTTGAGGGCGAGATAACCCCAGCCTTACTTGCAAAATTACGAATGGAATTAGATCAGTATATTCGTGATGAAGAAGACTCTGTCATTGTGTTCTCAAGTCGAAATGAAAGATGGCTCGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAATACATCAAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTATAAAGCGCTGATGTGAATGGGTTTGCACCTGCTTTCGGAGTTTACACTGTAAGGTTTGAGAGCGAAAATGTAGGATTTGTTTGTCGGTCGACAGATTTGGGTGTTTAAGGTATGATGGGAGTAAGCGTTGAGAGGGTACCT # Right flank : CTAACTATTTACGATTGTTTTGGCAGACATTCTCTTAATCTAATGAGTAATGTCTGCGGCCAATGCAATCTATTCTCCAGCCATTACAAAAAATACTCACGATAATCTTTAACATACTGATCAAACGAAGTAGGCTCATGGTGCAATAATTCCTTTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAACGCTTTTGGGGTTCCGCGTTTTATTATCGTTGCGCGAAATCTTAATAGCGATGGCTTGCTGTATGTTATTTCTCTCCCTAGTATCGCGGTCATTTTCTCTGCTACTTCATAATACGTCAATGCTTCTTCTCCAGTAATGCTATATTTTTTTTTCAATATGTTGTGGGGTATTCATCAAGCAAATAGCAGCGATTTCTCCAATGTCGCGTGTATCAATAAAGCTCGTTCGCGCTTTGCCTGCAGGTATGAATAAATCATCATGTTTTTGAATAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 5491-5125 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODL01000033.1 Listeria riparia FSL S10-1204 c31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5490 36 100.0 30 .................................... ATGGTTACTACAATAACAGCCTCTCTATAT 5424 36 100.0 30 .................................... AGCCACCACCTGCACACCACATTTATCTTT 5358 36 100.0 30 .................................... CTAATAACTGGAACAGGAATAGAACAACAT 5292 36 100.0 30 .................................... TTATTTTACTAACTAGCTTTTTTTACTCGA 5226 36 100.0 30 .................................... CCAAAATGGATTACGTAGATCGCAATGTAT 5160 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : GCCGACCCGTTGGATGACCGTGAACGTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATCACAGCAGATATGAATTAGCTAAAGCCGCACGTTTTAGTCCTCTTTTGTTTTGAGGTTGTAATACATATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAATAATTTCCCGGACTAAATCAACCAAAAAATACCCTAAACCGCATCTTACACAGTGATCTACAGTGTTTCCCCTTCTTTCTAAGTGGAGAGACGGGGATTATGATAGTTGGATGAAATGTATTCGTGGTGCTGGTTTCAACGCTTATAATGTTGGCTGTGTGGCAATTTTGTGGCAAATAATTTTAAGAAGATGGTGAGAGGTTTTGTTCGTCATCTTCTTTGTTGTGTGCTGACTTGTTCTCTTCACAGCCATTGTAATTGGAAATATTATTCCTCACTTATCCACAGCAGAG # Right flank : TGAAATAGACGGAGAACAAGCTTTCTGTATATTTTAGTCCTCTTCTGCTTTTAAGTACCAACTACTCATCATTATCTCCATATAATTTATTCAAAAATGTTTTCAAATCCTCAGCAAGCAAAAACATATTCTCCATTTCCGAATCAGATTCCATATCGTGTCGCCAAAAATAAACTTTTCCTTTATACTCGCTCTTCTCTGTTCCTATGCAGATTTCGTTTCCAGCAGGGTCGTCAGCAATAGAAATAAAACCATCTGGTATTTCACCATCCAATATTTCAAATGTCTCACCTAAATCCCCTGATTCTTCTCCAATGCCATAAAATTTATTAACTAAGCTAACGCCTTCATCATCTGATATTATAAAATTAGATTTTTCAGGGTACCCACCATTAAATTCAAGCAAGAAAGTCTTATATTCTTGCGGTAGGTTTAAACCATGCTTAGATTCAAATACTTCAATATCCTTACTAGTTATTTTTTTATTTTCACTGTTCATC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 9696-9466 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODL01000033.1 Listeria riparia FSL S10-1204 c31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 9695 33 100.0 33 ................................. ATCGCGATGCCAATTAGTTCCGTTGGATATACT 9629 33 100.0 33 ................................. ATCTTTCAACAATCATTTCGTCAACAATTGCCA 9563 33 100.0 32 ................................. TCATATGGATGAATTTTTGATTCATGCGGTCC 9498 33 90.9 0 ................A..........T.T... | ========== ====== ====== ====== ================================= ================================= ================== 4 33 97.7 33 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAA # Left flank : ATACTGTACAGATATCCCCATATCAAATATCTCCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCACCTTGAAGTGTGATAGGTAACGCTTTGCTATCATCTTTCTTCAATAAACGTATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAGGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTTAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGTACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCATCATTGACTACCGATTGGATGAGCATCACTTTGAACGCTCTATTTTCTATGGCTACTAACCTCCGTTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TACTTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAATGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTTCCACTTAAATGTCTCAATTTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGATAGTATTAATCCAGCTATCCACTCTTTCGGTATGTCCAGAACTCTTTAAATA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //