Array 1 1185341-1184234 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABVLQ010000001.1 Escherichia ruysiae isolate Human faeces, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1185340 28 100.0 32 ............................ GTTATGGTGCCGGTGGTTTGCTGCATATAAGC 1185280 28 100.0 32 ............................ GTACCCTGGTGAGAAAGACGAGCGCCCGTCTT 1185220 28 100.0 32 ............................ TGTTCATCCGGGAAGCCCCGCGTCTGATACCA 1185160 28 100.0 32 ............................ GGACTTCATCGCAAAACACGCGGTAACGCAGC 1185100 28 100.0 32 ............................ CGTCTTTATCACCCGATCTCCGGTATCGAAAT 1185040 28 100.0 32 ............................ AGGAGGAGGAGCGTAATCGCCTGACGCTGGAA 1184980 28 100.0 32 ............................ GCGCCTCCGCGACGCAATTAACATGGCAAAAT 1184920 28 100.0 32 ............................ GCTCACAATCCCGCGCTCATACCCCCACTTGT 1184860 28 100.0 32 ............................ GGCATGTAAACATCAGAGAGTTGTCTTAATTT 1184800 28 100.0 32 ............................ GTTCGGAGTCGGCCTGTTCTGGCTTAAACTGT 1184740 28 100.0 32 ............................ CACACCAAAACTGCTAACCATAGCAGCCCATT 1184680 28 100.0 32 ............................ GGTACAGCTCCAGCATTAATCCCCACCAGCTC 1184620 28 100.0 32 ............................ AGTTTGCTCTGAGCATATTCAAAGCGGTAATT 1184560 28 100.0 32 ............................ TGAGCATCGGAGCAAAAGGACGAGTTATGGAT 1184500 28 100.0 32 ............................ AAAGTGTCCCTTTATAGCCTTTAGCCCGTGCC 1184440 28 100.0 32 ............................ ATCCACCGGGCCTGATGACACGCTTTGCACGC 1184380 28 100.0 32 ............................ CGTGCATCATGAATCATGCTGTTCAGCACGCG 1184320 28 100.0 32 ............................ GCCGAAGCCCGGCGTAGCCGGTACGGATCATC 1184260 27 85.7 0 .......A...C........-...T... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCTGGGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCATGCGGTTCATCCGTCCAGGATTGTGAATGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCTAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGAGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTTTGTTATTATTCCA # Right flank : ATCCATAACCCAATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1195981-1194209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABVLQ010000001.1 Escherichia ruysiae isolate Human faeces, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1195980 28 100.0 32 ............................ ATTTGTCTGCGCGGGTCATGCGGGGTTTACCC 1195920 28 100.0 32 ............................ GCAAATCTGGCAATCGAGGCCGCGTTTATTCG 1195860 28 100.0 32 ............................ TTCAGTAACAGTAATATGCGATTCTTTATGCG 1195800 28 100.0 32 ............................ TCGAGGCGACAGAAACATTCTACACGTTAGAA 1195740 28 100.0 32 ............................ GATTGCATCGCGGCGTATACGGCTTTCTCAAT 1195680 28 100.0 33 ............................ GCTTTGTCAGAAGCGGGTGTGTTATTTCCAAAG 1195619 28 100.0 32 ............................ ATTGAGCGTGCAACCGAGCGCCAGATTAACGT 1195559 28 100.0 32 ............................ AGAACGGGAAGGCGTGCAACTTAGGAGAGTTC 1195499 28 100.0 32 ............................ TTGTCTGACGGTCACTGATCGGCACGGTGTTG 1195439 28 100.0 32 ............................ GTAACAATCAACGTGGAGTATAAATAATGTTA 1195379 28 100.0 32 ............................ TATGGCTGATAAGCTATGGAACCCCGACTATT 1195319 28 100.0 32 ............................ AGGTGGAAGCAGATAACCGCGTATCGTGAATA 1195259 28 100.0 32 ............................ ACGCCGAAGTGTTGGGCATCAAGGATTCTCCA 1195199 28 100.0 33 ............................ AGCGGCATCGACTGCGCAACGGGGTTCCTGTCC 1195138 28 100.0 32 ............................ GCTAAGGTAGAAGAGAAAGAACCTGAAGTTGA 1195078 28 100.0 32 ............................ GTTTTGATGTATCGAAACTTACCGCTTCTACT 1195018 28 100.0 32 ............................ CAACATCAGCTCCCCGGCGTCGAGCATCTTTT 1194958 28 100.0 32 ............................ GCTGAGCAAAACGCATTAACACAAGACTGGTC 1194898 28 100.0 32 ............................ AAATCTGATGGGCGGCAGAAGTAGTTTTACCT 1194838 28 100.0 32 ............................ GTACAGCCGGTCGCAGTATCACGACGGGCAGG 1194778 28 100.0 32 ............................ TCCCAGTTCTGCAGATATGCATCCGATACCGC 1194718 28 100.0 33 ............................ GGAGAACGGCGGGAACGCGGTAGCACCAATGAT 1194657 28 100.0 32 ............................ CAGCACGGTGCGTCCATCAAATTGACCGGTGG 1194597 28 100.0 32 ............................ TCTTATTGCCTCTTATCGCCTGGACTGGTTCC 1194537 28 100.0 32 ............................ TGGAAAGGGGCGAGCTTACTGTCAACGACGAT 1194477 28 100.0 32 ............................ TGCGCACGTTCATCACATGCGGTGCAAATAAT 1194417 28 100.0 32 ............................ AGACACTCTCTGGTGGTGAGAAGCGGAAGGTT 1194357 28 100.0 32 ............................ AGACACTCTCTGGTGGTGAGAAGCGGAAGGTT 1194297 28 100.0 32 ............................ AGACACTCTCTGGTGGAGAGAAGCGGAAGATT 1194237 28 89.3 0 ....................T...C..T | C [1194213] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAGCTGGATCAAAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCACGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGTGCACGTCCGATGGCTCGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTGTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTTCTGTAACTTATTGATAATTAACGCTGCTGGAAGGCAAGGATAAAAAAGGGTGGCAGCAGGGAAATTGGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGTAATGGTAGACGTTTGGTCATATCATGATGCTCTCAACGTCAAAACATTAGCCTTAGCACACAATAACAAATGTAATAATTGCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTAAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACTATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //