Array 1 171128-173109 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMJ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171128 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171189 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171250 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171311 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171372 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171433 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171494 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171555 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171616 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171677 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171738 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171799 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171860 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 171921 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 171982 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172043 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172104 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172165 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172226 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172287 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172349 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172410 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172471 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172532 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172593 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172655 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172716 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172777 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172838 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172899 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172960 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173021 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173082 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189617-191353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMJ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189617 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189678 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189739 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189800 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189861 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189922 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189983 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190044 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190105 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190166 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190227 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190288 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190349 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190410 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190471 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190532 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190593 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190654 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190715 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190776 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190837 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190898 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190959 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191020 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191081 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191142 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191203 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191264 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191325 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGATGATCTGGACAACTGCCCGCAATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGATGATCTGGACAACTGCCCGCAATGGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 191585-192468 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMJ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712438, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191585 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191646 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191707 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191768 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191829 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191890 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191951 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192012 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192073 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192134 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192195 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192256 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192317 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192378 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192439 29 93.1 0 A...........T................ | A [192465] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGGCAGCGAGACCACGAAAGAGGGAATACCGACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGTGCGTGATGAGGTTCGCGGAGCATGTTCTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCCCTTTCTGATTTTTTCCGTAATGTCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATGTTTGATTGTGCGGATTGACCAAAAGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //