Array 1 214456-213231 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKRD01000001.1 Hydrogenoanaerobacterium saccharovorans strain DSM 24774 Ga0244692_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 214455 32 100.0 34 ................................ GTTTATACTTGCAGACTTAGCACCACTAAAGAAT 214389 32 100.0 34 ................................ TACAGTAATGTTTTTTTCCTTGACTTCTGAAATG 214323 32 100.0 33 ................................ TATCAGAACATGTATATGATAAAGAGCAAAATA 214258 32 100.0 34 ................................ TATGTGTGTATTGTCGTATTTTTTGTGTTGTAAA 214192 32 100.0 33 ................................ ACCCGCGGAGCTTAATATCTTTAATCTTGTATG 214127 32 100.0 36 ................................ CGTTGAGGACATGCTAAACAAAGTTAAAGGCGATAA 214059 32 100.0 34 ................................ TACATATCGTAACCGTTTCAGCTTGTTCCCTTAA 213993 32 100.0 33 ................................ TGATAATCTTCATAGGCTGCTTTCGCACCCTGT 213928 32 100.0 36 ................................ ACCCTCGTCATAAAGTAGCTGAATGAACTCAATGGT 213860 32 100.0 33 ................................ TACCAAGTTTAGTTACAGTATAGCTTATCCTAC 213795 32 100.0 36 ................................ AGTTGTACGGCAGCTTTCGTGCCGCATCAGTTCTCG 213727 32 100.0 33 ................................ ATCGCAGGGGTTGCAGTATAGCTATGTTTTGGC 213662 32 100.0 37 ................................ TTGACAGTGGCGTTCAAAGCCCCGAAGCGCAGAGCGC 213593 32 100.0 34 ................................ CTTGCATTGTTTACAGTATGGCTTTATCTCTCCT 213527 32 100.0 36 ................................ ATTGAATAGGATGGTTAAATCTATTGATTTTGACCG 213459 32 100.0 33 ................................ GTGTCCAATAAATTAAAATGTTTTTTGCAATAC 213394 32 100.0 34 ................................ AATATTGGCAAGCTTGATTTGCTTGTAGTGCTCG 213328 32 96.9 34 .....................C.......... GTATTGATATTTGTTGGCATATGCTCCGCTTACG 213262 32 90.6 0 .........................C.A...G | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 99.3 34 GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Left flank : TGCGTATCCGCCATTTTTTTGGAAGTGAGGTTTACGCCATGCTGGTACTAATTACATATGATGTCAACACACAGGATGCTGCAGGAAGAAAACGGCTTAGGCAGGTAGCAAAACAATGTGTTAATTACGGTCAACGCGTTCAGAACTCTGTTTTTGAATGTATTGTAGATGCCGCACAATGTAAAATTGTACAACATGAACTGGAAGCCATAATCAATAAAGAAAAAGACAGTTTGCGGTTTTACTATTTGGGTAATAACTATCACACAAAAGTAGAACACATAGGTGTCAAAACATCTTATGATGCAGAAGGAGTGTTAATTGTATAGGCAAGAGGGAGTGCGAACTATAAGCAAACAGTTTTCTCCCGGAACGTTCGCACCCTAAAATAAGAGAATTTTATGCTTAATCATCATTGTAGGTTGTTGTAATATGTAGTTTTGATAGTGAAATATATCAAAACAGCACAATAAATTTATTGTTTTCTGTTTATTTTTGCC # Right flank : CAAACGAACTGGCTCTGAAACAAAACTTATATCTTTCATCAGCACCCTATATTATCTTAATCCAGTTTAGTATATAATGTAAATAATGGACATCAATAAACAAATAGGGGGATTTTATGAAGACGGTATTGATAAGTGAATGCAGTGACTATAACATACCTCATACTGCGCTGCTTGACCTTTCGACTATCAAGGTAAAAGGCTGTACTGGCTGCTGGACTTGTTGGTGGAAAACACCCGGCAAATGTATTCAGCATGATTTGGATGATTTTTACCGAAGTTATCTTAACTCTGATAAAGCTATATTTATTGCAAAGCTTGAAAATGGATTTATCAGCGGCAACATGAAGTCGTTATTTGATAGAATGATACCACACTTTTTACCTTACTGCGCTTTTGCCAACGGCGGAACAATGCACATGCCCAGATATAAAAAATACCCCGATATTGAATTTTACTATGACTATCAATTTGAAAATCAAGATGTATACAACATATTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 562178-561354 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKRD01000001.1 Hydrogenoanaerobacterium saccharovorans strain DSM 24774 Ga0244692_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 562177 32 100.0 35 ................................ ATCGAACGGTGGCGTAGGTGGTTTAGGTCAAGTTG 562110 32 100.0 33 ................................ GCTGTAACGTTAACATAAGTCCTAGTCAACTAT 562045 32 100.0 34 ................................ ATTTCATTTGTAAATGTCAATAGCTATAATTTAA 561979 32 100.0 34 ................................ ACAAGCAATAGCTCTATGATTGCCATCTGGTATG 561913 32 100.0 34 ................................ TGCAAACCATATTGCTGTACGATGTGGCACCGTA 561847 32 100.0 35 ................................ TATTTTTTAATTACATATAACCAACACAAAAATAG 561780 32 100.0 33 ................................ CTGTGGATTCTTATCTAAAAAAGGCTGCTTTTG 561715 32 90.6 33 ..........T.A.G................. GATTGAAAATATACACGCAGGTCGTCGCCGTTT 561650 32 87.5 34 ............A.G.....C..........C TTCATAATATCACCTCAATAGGTATCATATCAAG 561584 32 90.6 34 ............A.G................C AGATGATGACATAAGCATCAACCCAAGTATTATC 561518 32 90.6 33 ............A.G................C AAATGGTAAATATTATCTATACCATACATACTA 561453 32 93.8 36 ............A.G................. ATTGCTTGGGATAGCCACGACATCGTGGAACCGTTG 561385 32 78.1 0 ..............G.........GCA..GTC | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 94.7 34 GTCGCACCCTACGCAGGTGCGTGGATTGAAAT # Left flank : TATACTTTCACTGTTTTCATTCGCGCGTCACTTATTTTTATTTATGTAGGTGCTTAAAATCTTTTACAATACATTTCAATGATTGAGTACTCGATGTCCGCCCCTCAGCCTCACTCAAAGTAGGTGGACAAGGTATGCGTTATACCGAATGTTGGGGTACAAAGTATATTTGTTTTTTTGCAGATAACAACCGTTGGTTTGATGCGGAAAGGATAGACAACGCAAAAATGCATCGCCTATCCTTTTGTAGAAATATGTGGAATTTTATTGTATAATAAAACTAGAACACATTAATGTAAAAACACAAAGGCGTACTGATTGTTTAAGCAAGCAAAAACAAGTGCGAACTAGAAGCAAACAGCTTTCTTCCGGAACGTTCGCACCCCAAAATAAGGAAGATTTATGCTTAATCAACATTATAGCTTTTGCTGCTTGCAGTTCCAAAGGCTAAATATAGTAAAACATTACAAAAATTCAATTGATTTTTGTTCGTTTTTGCT # Right flank : AAAAAACCTCGAACACGCAAATTACGTGTTCGAGGGTCAAAGATGGTTGAGATATTAAAATTATACAATTACAATTATTTCAACATCATTTTAATGGAGGCTCTACGCAATGACAGAATACAACATAGCAGAATTAGTAAAAGAAAACTATGAATTAAAAGCTAGAATGAATGAGTTAAATGAAGTTATAGTTAAGTTGAATTTACAACTATATAATTCATCAAATGAGACTTATATTCCTGCAATTAATCAACGAACACTTTTTTGTGACTTTTATAAAAGTGGTTAACAGAGTATCATAAAAATTTTGTACAACCAACATCCTATCAAGAATATGAGCGTTTGATGAATAAACATATTTATCCATATTTTAAAAAAGAAAATGTTTATTTAGATGAACTCAAAGCAGATGATATACAAAGATACTATTATCGAAAGTCACTTGAAGGTATTACAAGTAATTCTTTGTTAAGACATCATTCCAACTTATACACATGCCT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //